RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 SF3B2Q13435 895 aaKnown RBP18.32■□□□□ 0.52
SHMT2-228ENST00000557302 CFAP53Q96M91 514 aa18.31■□□□□ 0.52
SHMT2-228ENST00000557302 TRIM37O94972 964 aa18.3■□□□□ 0.52
SHMT2-228ENST00000557302 RALBP1Q15311 655 aa18.3■□□□□ 0.52
SHMT2-228ENST00000557302 DDX54Q8TDD1 881 aaKnown RBP18.3■□□□□ 0.52
SHMT2-228ENST00000557302 BCL9O00512 1426 aa18.3■□□□□ 0.52
SHMT2-228ENST00000557302 COL3A1P02461 1466 aaPredicted RBP18.28■□□□□ 0.52
SHMT2-228ENST00000557302 PCDH11XQ9BZA7 1347 aa18.27■□□□□ 0.52
SHMT2-228ENST00000557302 PCDH11YQ9BZA8 1340 aa18.27■□□□□ 0.52
SHMT2-228ENST00000557302 SULT6B1Q6IMI4 303 aa18.27■□□□□ 0.52
SHMT2-228ENST00000557302 AEBP1Q8IUX7 1158 aa18.27■□□□□ 0.52
SHMT2-228ENST00000557302 PLEKHG2Q9H7P9 1386 aa18.27■□□□□ 0.51
SHMT2-228ENST00000557302 SPG7Q9UQ90 795 aa18.26■□□□□ 0.51
SHMT2-228ENST00000557302 BAG6P46379 1132 aa18.25■□□□□ 0.51
SHMT2-228ENST00000557302 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.25■□□□□ 0.51
SHMT2-228ENST00000557302 RGPD1P0DJD0 1748 aa18.25■□□□□ 0.51
SHMT2-228ENST00000557302 KDRP35968 1356 aa18.25■□□□□ 0.51
SHMT2-228ENST00000557302 U2SURPO15042 1029 aaKnown RBP18.24■□□□□ 0.51
SHMT2-228ENST00000557302 NUDCQ9Y266 331 aa18.24■□□□□ 0.51
SHMT2-228ENST00000557302 HMOX1P09601 288 aa18.23■□□□□ 0.51
SHMT2-228ENST00000557302 DEFB132Q7Z7B7 95 aa18.23■□□□□ 0.51
SHMT2-228ENST00000557302 BCL11BQ9C0K0 894 aaPredicted RBP18.23■□□□□ 0.51
SHMT2-228ENST00000557302 PKD1L3Q7Z443 1732 aa18.23■□□□□ 0.51
SHMT2-228ENST00000557302 SHANK3Q9BYB0 1731 aa18.23■□□□□ 0.51
SHMT2-228ENST00000557302 CYP27B1O15528 508 aa18.22■□□□□ 0.51
SHMT2-228ENST00000557302 APBA3O96018 575 aa18.22■□□□□ 0.51
SHMT2-228ENST00000557302 PLEKHO1Q53GL0 409 aaPredicted RBP18.22■□□□□ 0.51
SHMT2-228ENST00000557302 ACSBG1Q96GR2 724 aa18.22■□□□□ 0.51
SHMT2-228ENST00000557302 MYBBP1AQ9BQG0 1328 aaKnown RBP18.22■□□□□ 0.51
SHMT2-228ENST00000557302 TNS1Q9HBL0 1735 aaKnown RBP18.21■□□□□ 0.51
SHMT2-228ENST00000557302 AMOTQ4VCS5 1084 aa18.21■□□□□ 0.51
SHMT2-228ENST00000557302 PRKRIP1Q9H875 184 aaPredicted RBP18.21■□□□□ 0.51
SHMT2-228ENST00000557302 KCNQ2O43526 872 aa18.2■□□□□ 0.5
SHMT2-228ENST00000557302 SBF2Q86WG5 1849 aa18.2■□□□□ 0.5
SHMT2-228ENST00000557302 EN1Q05925 392 aaPredicted RBP18.19■□□□□ 0.5
SHMT2-228ENST00000557302 PTF1AQ7RTS3 328 aa18.19■□□□□ 0.5
SHMT2-228ENST00000557302 IFNL2Q8IZJ0 200 aa18.19■□□□□ 0.5
SHMT2-228ENST00000557302 U2AF1L5P0DN76 240 aaPredicted RBP18.18■□□□□ 0.5
SHMT2-228ENST00000557302 PHKG2P15735 406 aa18.18■□□□□ 0.5
SHMT2-228ENST00000557302 U2AF1Q01081 240 aaKnown RBP eCLIP18.18■□□□□ 0.5
SHMT2-228ENST00000557302 ZNF530Q6P9A1 599 aaPredicted RBP18.18■□□□□ 0.5
SHMT2-228ENST00000557302 SYTL4Q96C24 671 aaPredicted RBP18.18■□□□□ 0.5
SHMT2-228ENST00000557302 NHSQ6T4R5 1651 aa18.18■□□□□ 0.5
SHMT2-228ENST00000557302 NKX1-1Q15270 411 aaPredicted RBP18.17■□□□□ 0.5
SHMT2-228ENST00000557302 PRIM1P49642 420 aaKnown RBP18.16■□□□□ 0.5
SHMT2-228ENST00000557302 CAMKK2Q96RR4 588 aa18.16■□□□□ 0.5
SHMT2-228ENST00000557302 C1orf141Q5JVX7 400 aa18.15■□□□□ 0.5
SHMT2-228ENST00000557302 KAT6BQ8WYB5 2073 aa18.14■□□□□ 0.5
SHMT2-228ENST00000557302 PLSCR1O15162 318 aa18.14■□□□□ 0.49
SHMT2-228ENST00000557302 HSP90AB1P08238 724 aaKnown RBP18.14■□□□□ 0.49
SHMT2-228ENST00000557302 EZH2Q15910 746 aaKnown RBP18.14■□□□□ 0.49
SHMT2-228ENST00000557302 POTEDQ86YR6 584 aa18.14■□□□□ 0.49
SHMT2-228ENST00000557302 RSPH6AQ9H0K4 717 aa18.14■□□□□ 0.49
SHMT2-228ENST00000557302 DOT1LQ8TEK3 1739 aa18.14■□□□□ 0.49
SHMT2-228ENST00000557302 FCHSD2O94868 740 aa18.13■□□□□ 0.49
SHMT2-228ENST00000557302 PRKAR2BP31323 418 aa18.13■□□□□ 0.49
SHMT2-228ENST00000557302 ANP32CO43423 234 aa18.12■□□□□ 0.49
SHMT2-228ENST00000557302 DCAF5Q96JK2 942 aa18.12■□□□□ 0.49
SHMT2-228ENST00000557302 MTHFSDQ2M296 383 aaKnown RBP18.11■□□□□ 0.49
SHMT2-228ENST00000557302 AKAP4Q5JQC9 854 aa18.11■□□□□ 0.49
SHMT2-228ENST00000557302 MPRIPQ6WCQ1 1025 aa18.1■□□□□ 0.49
SHMT2-228ENST00000557302 GAS2L2Q8NHY3 880 aa18.1■□□□□ 0.49
SHMT2-228ENST00000557302 BTAF1O14981 1849 aa18.09■□□□□ 0.49
SHMT2-228ENST00000557302 TMOD3Q9NYL9 352 aa18.09■□□□□ 0.49
SHMT2-228ENST00000557302 RGPD3A6NKT7 1758 aaPredicted RBP18.09■□□□□ 0.49
SHMT2-228ENST00000557302 RGPD4Q7Z3J3 1758 aa18.09■□□□□ 0.49
SHMT2-228ENST00000557302 TOGARAM1Q9Y4F4 1720 aa18.09■□□□□ 0.49
SHMT2-228ENST00000557302 KDM6AO15550 1401 aaPredicted RBP18.08■□□□□ 0.49
SHMT2-228ENST00000557302 ERVV-2B6SEH9 535 aa18.08■□□□□ 0.48
SHMT2-228ENST00000557302 TXNRD1Q16881 649 aa18.08■□□□□ 0.48
SHMT2-228ENST00000557302 PHACTR3Q96KR7 559 aa18.08■□□□□ 0.48
SHMT2-228ENST00000557302 NEFMP07197 916 aa18.07■□□□□ 0.48
SHMT2-228ENST00000557302 WDR43Q15061 677 aaKnown RBP eCLIP18.06■□□□□ 0.48
SHMT2-228ENST00000557302 PROM2Q8N271 834 aa18.06■□□□□ 0.48
SHMT2-228ENST00000557302 PIGBQ92521 554 aa18.06■□□□□ 0.48
SHMT2-228ENST00000557302 PNNQ9H307 717 aaKnown RBP18.06■□□□□ 0.48
SHMT2-228ENST00000557302 RREB1Q92766 1687 aa18.06■□□□□ 0.48
SHMT2-228ENST00000557302 CABP4P57796 275 aa18.05■□□□□ 0.48
SHMT2-228ENST00000557302 MAP3K5Q99683 1374 aa18.04■□□□□ 0.48
SHMT2-228ENST00000557302 GNAT3A8MTJ3 354 aa18.04■□□□□ 0.48
SHMT2-228ENST00000557302 SMARCC1Q92922 1105 aaPredicted RBP18.04■□□□□ 0.48
SHMT2-228ENST00000557302 MAPK8IP3Q9UPT6 1336 aa18.03■□□□□ 0.48
SHMT2-228ENST00000557302 ITGB4P16144 1822 aa18.03■□□□□ 0.48
SHMT2-228ENST00000557302 RNMTO43148 476 aaKnown RBP18.03■□□□□ 0.48
SHMT2-228ENST00000557302 NBPF14Q5TI25 921 aa18.03■□□□□ 0.48
SHMT2-228ENST00000557302 PALLDQ8WX93 1383 aa18.03■□□□□ 0.48
SHMT2-228ENST00000557302 SLC27A3Q5K4L6 730 aa18.02■□□□□ 0.48
SHMT2-228ENST00000557302 NUP188Q5SRE5 1749 aa18.02■□□□□ 0.48
SHMT2-228ENST00000557302 PLEKHF1Q96S99 279 aa18.02■□□□□ 0.48
SHMT2-228ENST00000557302 LGR6Q9HBX8 967 aa18.02■□□□□ 0.48
SHMT2-228ENST00000557302 NFATC2IPQ8NCF5 419 aa18.01■□□□□ 0.47
SHMT2-228ENST00000557302 SLC52A2Q9HAB3 445 aa18.01■□□□□ 0.47
SHMT2-228ENST00000557302 LRRC4BQ9NT99 713 aa18■□□□□ 0.47
SHMT2-228ENST00000557302 CCNL1Q9UK58 526 aaPredicted RBP18■□□□□ 0.47
SHMT2-228ENST00000557302 ASAP1Q9ULH1 1129 aa18■□□□□ 0.47
SHMT2-228ENST00000557302 ADAMTS8Q9UP79 889 aa18■□□□□ 0.47
SHMT2-228ENST00000557302 SCN11AQ9UI33 1791 aa17.99■□□□□ 0.47
SHMT2-228ENST00000557302 CCDC184Q52MB2 194 aa17.99■□□□□ 0.47
SHMT2-228ENST00000557302 RTF1Q92541 710 aaKnown RBP17.99■□□□□ 0.47
SHMT2-228ENST00000557302 MRS2Q9HD23 443 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms