RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 PLSCR1O15162 318 aa28.11■■■□□ 2.09
CCDC88C-210ENST00000555995 NUP188Q5SRE5 1749 aa28.11■■■□□ 2.09
CCDC88C-210ENST00000555995 PLEKHG2Q9H7P9 1386 aa28.11■■■□□ 2.09
CCDC88C-210ENST00000555995 PER1O15534 1290 aaPredicted RBP28.1■■■□□ 2.09
CCDC88C-210ENST00000555995 USHBP1Q8N6Y0 703 aa28.1■■■□□ 2.09
CCDC88C-210ENST00000555995 PKD1L3Q7Z443 1732 aa28.09■■■□□ 2.09
CCDC88C-210ENST00000555995 DDX54Q8TDD1 881 aaKnown RBP28.08■■■□□ 2.09
CCDC88C-210ENST00000555995 KAT6BQ8WYB5 2073 aa28.07■■■□□ 2.08
CCDC88C-210ENST00000555995 PCDH11XQ9BZA7 1347 aa28.07■■■□□ 2.08
CCDC88C-210ENST00000555995 PCDH11YQ9BZA8 1340 aa28.07■■■□□ 2.08
CCDC88C-210ENST00000555995 DOT1LQ8TEK3 1739 aa28.06■■■□□ 2.08
CCDC88C-210ENST00000555995 BTAF1O14981 1849 aa28.05■■■□□ 2.08
CCDC88C-210ENST00000555995 EIF4A2Q14240 407 aaKnown RBP28.05■■■□□ 2.08
CCDC88C-210ENST00000555995 EYA1Q99502 592 aa28.04■■■□□ 2.08
CCDC88C-210ENST00000555995 NBPF14Q5TI25 921 aa28.03■■■□□ 2.08
CCDC88C-210ENST00000555995 ACSBG1Q96GR2 724 aa28.02■■■□□ 2.08
CCDC88C-210ENST00000555995 IGSF1Q8N6C5 1336 aa28.01■■■□□ 2.07
CCDC88C-210ENST00000555995 CC2D1BQ5T0F9 858 aaKnown RBP28■■■□□ 2.07
CCDC88C-210ENST00000555995 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28■■■□□ 2.07
CCDC88C-210ENST00000555995 SPG7Q9UQ90 795 aa28■■■□□ 2.07
CCDC88C-210ENST00000555995 KCNQ2O43526 872 aa27.98■■■□□ 2.07
CCDC88C-210ENST00000555995 PTF1AQ7RTS3 328 aa27.97■■■□□ 2.07
CCDC88C-210ENST00000555995 LRP5O75197 1615 aa27.93■■■□□ 2.06
CCDC88C-210ENST00000555995 MTHFSP49914 203 aa27.93■■■□□ 2.06
CCDC88C-210ENST00000555995 PSDA5PKW4 1024 aaPredicted RBP27.92■■■□□ 2.06
CCDC88C-210ENST00000555995 ZEB1P37275 1124 aaPredicted RBP27.92■■■□□ 2.06
CCDC88C-210ENST00000555995 R3HDM1Q15032 1099 aaKnown RBP27.92■■■□□ 2.06
CCDC88C-210ENST00000555995 TXNRD1Q16881 649 aa27.92■■■□□ 2.06
CCDC88C-210ENST00000555995 SYTL4Q96C24 671 aaPredicted RBP27.92■■■□□ 2.06
CCDC88C-210ENST00000555995 CYP27B1O15528 508 aa27.9■■■□□ 2.06
CCDC88C-210ENST00000555995 PRIM1P49642 420 aaKnown RBP27.9■■■□□ 2.06
CCDC88C-210ENST00000555995 KDRP35968 1356 aa27.89■■■□□ 2.06
CCDC88C-210ENST00000555995 LY75O60449 1722 aa27.88■■■□□ 2.05
CCDC88C-210ENST00000555995 IL13P35225 146 aa27.88■■■□□ 2.05
CCDC88C-210ENST00000555995 IFNL2Q8IZJ0 200 aa27.88■■■□□ 2.05
CCDC88C-210ENST00000555995 ITGB4P16144 1822 aa27.88■■■□□ 2.05
CCDC88C-210ENST00000555995 TOGARAM1Q9Y4F4 1720 aa27.87■■■□□ 2.05
CCDC88C-210ENST00000555995 NKX1-1Q15270 411 aaPredicted RBP27.87■■■□□ 2.05
CCDC88C-210ENST00000555995 AMOTQ4VCS5 1084 aa27.87■■■□□ 2.05
CCDC88C-210ENST00000555995 PLEKHO1Q53GL0 409 aaPredicted RBP27.87■■■□□ 2.05
CCDC88C-210ENST00000555995 SLC27A3Q5K4L6 730 aa27.87■■■□□ 2.05
CCDC88C-210ENST00000555995 HMGB2P26583 209 aaKnown RBP27.86■■■□□ 2.05
CCDC88C-210ENST00000555995 PROM2Q8N271 834 aa27.86■■■□□ 2.05
CCDC88C-210ENST00000555995 DIAPH1O60610 1272 aaKnown RBP27.85■■■□□ 2.05
CCDC88C-210ENST00000555995 PAPPAQ13219 1627 aa27.85■■■□□ 2.05
CCDC88C-210ENST00000555995 HSP90AB1P08238 724 aaKnown RBP27.84■■■□□ 2.05
CCDC88C-210ENST00000555995 STK32BQ9NY57 414 aa27.84■■■□□ 2.05
CCDC88C-210ENST00000555995 PHKG2P15735 406 aa27.83■■■□□ 2.05
CCDC88C-210ENST00000555995 SULT6B1Q6IMI4 303 aa27.83■■■□□ 2.05
CCDC88C-210ENST00000555995 CFAP53Q96M91 514 aa27.83■■■□□ 2.05
CCDC88C-210ENST00000555995 CNGB1Q14028 1251 aaPredicted RBP27.82■■■□□ 2.04
CCDC88C-210ENST00000555995 COL3A1P02461 1466 aaPredicted RBP27.82■■■□□ 2.04
CCDC88C-210ENST00000555995 AEBP1Q8IUX7 1158 aa27.79■■■□□ 2.04
CCDC88C-210ENST00000555995 SMARCC1Q92922 1105 aaPredicted RBP27.79■■■□□ 2.04
CCDC88C-210ENST00000555995 ANO8Q9HCE9 1232 aaPredicted RBP27.79■■■□□ 2.04
CCDC88C-210ENST00000555995 SLC15A2Q16348 729 aa27.78■■■□□ 2.04
CCDC88C-210ENST00000555995 C1orf141Q5JVX7 400 aa27.78■■■□□ 2.04
CCDC88C-210ENST00000555995 ZNF530Q6P9A1 599 aaPredicted RBP27.78■■■□□ 2.04
CCDC88C-210ENST00000555995 CASZ1Q86V15 1759 aa27.78■■■□□ 2.04
CCDC88C-210ENST00000555995 MPRIPQ6WCQ1 1025 aa27.77■■■□□ 2.04
CCDC88C-210ENST00000555995 QSER1Q2KHR3 1735 aa27.77■■■□□ 2.04
CCDC88C-210ENST00000555995 DCAF5Q96JK2 942 aa27.76■■■□□ 2.03
CCDC88C-210ENST00000555995 TMOD3Q9NYL9 352 aa27.76■■■□□ 2.03
CCDC88C-210ENST00000555995 PALLDQ8WX93 1383 aa27.74■■■□□ 2.03
CCDC88C-210ENST00000555995 CCNL1Q9UK58 526 aaPredicted RBP27.74■■■□□ 2.03
CCDC88C-210ENST00000555995 ERVV-2B6SEH9 535 aa27.73■■■□□ 2.03
CCDC88C-210ENST00000555995 PPP2R1AP30153 589 aa27.73■■■□□ 2.03
CCDC88C-210ENST00000555995 C5P01031 1676 aa27.72■■■□□ 2.03
CCDC88C-210ENST00000555995 LRRC4BQ9NT99 713 aa27.72■■■□□ 2.03
CCDC88C-210ENST00000555995 NUDCQ9Y266 331 aa27.72■■■□□ 2.03
CCDC88C-210ENST00000555995 U2SURPO15042 1029 aaKnown RBP27.7■■■□□ 2.02
CCDC88C-210ENST00000555995 HMOX1P09601 288 aa27.7■■■□□ 2.02
CCDC88C-210ENST00000555995 PIGBQ92521 554 aa27.7■■■□□ 2.02
CCDC88C-210ENST00000555995 SCN11AQ9UI33 1791 aa27.7■■■□□ 2.02
CCDC88C-210ENST00000555995 TAF1LQ8IZX4 1826 aa27.69■■■□□ 2.02
CCDC88C-210ENST00000555995 SPON1Q9HCB6 807 aa27.69■■■□□ 2.02
CCDC88C-210ENST00000555995 KDM6AO15550 1401 aaPredicted RBP27.68■■■□□ 2.02
CCDC88C-210ENST00000555995 AKAP4Q5JQC9 854 aa27.68■■■□□ 2.02
CCDC88C-210ENST00000555995 AKT1S1Q96B36 256 aa27.66■■■□□ 2.02
CCDC88C-210ENST00000555995 VIRMAQ69YN4 1812 aaKnown RBP27.66■■■□□ 2.02
CCDC88C-210ENST00000555995 ZNF831Q5JPB2 1677 aa27.65■■■□□ 2.02
CCDC88C-210ENST00000555995 TUBGCP6Q96RT7 1819 aa27.64■■■□□ 2.02
CCDC88C-210ENST00000555995 RALBP1Q15311 655 aa27.64■■■□□ 2.02
CCDC88C-210ENST00000555995 ZNF827Q17R98 1081 aa27.64■■■□□ 2.02
CCDC88C-210ENST00000555995 CABP4P57796 275 aa27.63■■■□□ 2.01
CCDC88C-210ENST00000555995 DDX10Q13206 875 aaKnown RBP27.63■■■□□ 2.01
CCDC88C-210ENST00000555995 GAS2L2Q8NHY3 880 aa27.62■■■□□ 2.01
CCDC88C-210ENST00000555995 TFCP2L1Q9NZI6 479 aa27.62■■■□□ 2.01
CCDC88C-210ENST00000555995 MTFR1LQ9H019 292 aa27.61■■■□□ 2.01
CCDC88C-210ENST00000555995 ADAMTS7Q9UKP4 1686 aa27.61■■■□□ 2.01
CCDC88C-210ENST00000555995 C4BP0C0L5 1744 aa27.61■■■□□ 2.01
CCDC88C-210ENST00000555995 MRC1P22897 1456 aa27.6■■■□□ 2.01
CCDC88C-210ENST00000555995 SLC16A10Q8TF71 515 aa27.6■■■□□ 2.01
CCDC88C-210ENST00000555995 SRCAPQ6ZRS2 3230 aa27.6■■■□□ 2.01
CCDC88C-210ENST00000555995 LOC102724428A0A0B4J2F2 783 aa27.59■■■□□ 2.01
CCDC88C-210ENST00000555995 KCNQ4P56696 695 aa27.59■■■□□ 2.01
CCDC88C-210ENST00000555995 SIK1P57059 783 aa27.59■■■□□ 2.01
CCDC88C-210ENST00000555995 MTHFSDQ2M296 383 aaKnown RBP27.58■■■□□ 2.01
CCDC88C-210ENST00000555995 PPP1R1BQ9UD71 204 aaPredicted RBP27.58■■■□□ 2.01
CCDC88C-210ENST00000555995 ASAP1Q9ULH1 1129 aa27.58■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms