RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 PER1O15534 1290 aaPredicted RBP28.08■■■□□ 2.09
VTI1B-205ENST00000555543 KCNQ2O43526 872 aa28.08■■■□□ 2.09
VTI1B-205ENST00000555543 DDX54Q8TDD1 881 aaKnown RBP28.07■■■□□ 2.08
VTI1B-205ENST00000555543 ACSBG1Q96GR2 724 aa28.07■■■□□ 2.08
VTI1B-205ENST00000555543 ZCRB1Q8TBF4 217 aaKnown RBP28.05■■■□□ 2.08
VTI1B-205ENST00000555543 RAPGEF4Q8WZA2 1011 aa28.05■■■□□ 2.08
VTI1B-205ENST00000555543 PSDA5PKW4 1024 aaPredicted RBP28.04■■■□□ 2.08
VTI1B-205ENST00000555543 PLSCR1O15162 318 aa28.03■■■□□ 2.08
VTI1B-205ENST00000555543 EIF4A2Q14240 407 aaKnown RBP28.03■■■□□ 2.08
VTI1B-205ENST00000555543 EYA1Q99502 592 aa28.03■■■□□ 2.08
VTI1B-205ENST00000555543 TATP17735 454 aaPredicted RBP28.02■■■□□ 2.08
VTI1B-205ENST00000555543 DOT1LQ8TEK3 1739 aa28.01■■■□□ 2.07
VTI1B-205ENST00000555543 BTAF1O14981 1849 aa28■■■□□ 2.07
VTI1B-205ENST00000555543 PKD1L3Q7Z443 1732 aa27.99■■■□□ 2.07
VTI1B-205ENST00000555543 R3HDM1Q15032 1099 aaKnown RBP27.99■■■□□ 2.07
VTI1B-205ENST00000555543 CC2D1BQ5T0F9 858 aaKnown RBP27.98■■■□□ 2.07
VTI1B-205ENST00000555543 PROM2Q8N271 834 aa27.97■■■□□ 2.07
VTI1B-205ENST00000555543 IGSF1Q8N6C5 1336 aa27.94■■■□□ 2.06
VTI1B-205ENST00000555543 PCDH11XQ9BZA7 1347 aa27.94■■■□□ 2.06
VTI1B-205ENST00000555543 PCDH11YQ9BZA8 1340 aa27.94■■■□□ 2.06
VTI1B-205ENST00000555543 KAT6BQ8WYB5 2073 aa27.94■■■□□ 2.06
VTI1B-205ENST00000555543 NPC1L1Q9UHC9 1359 aa27.94■■■□□ 2.06
VTI1B-205ENST00000555543 CYP27B1O15528 508 aa27.92■■■□□ 2.06
VTI1B-205ENST00000555543 TXNRD1Q16881 649 aa27.92■■■□□ 2.06
VTI1B-205ENST00000555543 PRIM1P49642 420 aaKnown RBP27.91■■■□□ 2.06
VTI1B-205ENST00000555543 CNGB1Q14028 1251 aaPredicted RBP27.91■■■□□ 2.06
VTI1B-205ENST00000555543 ANO8Q9HCE9 1232 aaPredicted RBP27.91■■■□□ 2.06
VTI1B-205ENST00000555543 NBPF14Q5TI25 921 aa27.89■■■□□ 2.06
VTI1B-205ENST00000555543 SYTL4Q96C24 671 aaPredicted RBP27.89■■■□□ 2.06
VTI1B-205ENST00000555543 TOGARAM1Q9Y4F4 1720 aa27.89■■■□□ 2.05
VTI1B-205ENST00000555543 MTHFSP49914 203 aa27.88■■■□□ 2.05
VTI1B-205ENST00000555543 LRP5O75197 1615 aa27.87■■■□□ 2.05
VTI1B-205ENST00000555543 IL13P35225 146 aa27.86■■■□□ 2.05
VTI1B-205ENST00000555543 SPG7Q9UQ90 795 aa27.86■■■□□ 2.05
VTI1B-205ENST00000555543 PAPPAQ13219 1627 aa27.85■■■□□ 2.05
VTI1B-205ENST00000555543 AEBP1Q8IUX7 1158 aa27.85■■■□□ 2.05
VTI1B-205ENST00000555543 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.84■■■□□ 2.053e-6■□□□□ 11.2
VTI1B-205ENST00000555543 PLEKHG2Q9H7P9 1386 aa27.83■■■□□ 2.05
VTI1B-205ENST00000555543 LRRC4BQ9NT99 713 aa27.81■■■□□ 2.04
VTI1B-205ENST00000555543 LY75O60449 1722 aa27.81■■■□□ 2.04
VTI1B-205ENST00000555543 NKX1-1Q15270 411 aaPredicted RBP27.8■■■□□ 2.04
VTI1B-205ENST00000555543 KDRP35968 1356 aa27.8■■■□□ 2.04
VTI1B-205ENST00000555543 COL3A1P02461 1466 aaPredicted RBP27.8■■■□□ 2.04
VTI1B-205ENST00000555543 ITGB4P16144 1822 aa27.79■■■□□ 2.04
VTI1B-205ENST00000555543 PHKG2P15735 406 aa27.79■■■□□ 2.04
VTI1B-205ENST00000555543 SULT6B1Q6IMI4 303 aa27.79■■■□□ 2.04
VTI1B-205ENST00000555543 CASZ1Q86V15 1759 aa27.78■■■□□ 2.04
VTI1B-205ENST00000555543 KCNQ4P56696 695 aa27.76■■■□□ 2.03
VTI1B-205ENST00000555543 IFNL2Q8IZJ0 200 aa27.76■■■□□ 2.03
VTI1B-205ENST00000555543 STK32BQ9NY57 414 aa27.76■■■□□ 2.03
VTI1B-205ENST00000555543 SLC15A2Q16348 729 aa27.75■■■□□ 2.03
VTI1B-205ENST00000555543 MPRIPQ6WCQ1 1025 aa27.75■■■□□ 2.03
VTI1B-205ENST00000555543 PDGFDQ9GZP0 370 aaPredicted RBP27.75■■■□□ 2.03
VTI1B-205ENST00000555543 DIAPH1O60610 1272 aaKnown RBP27.73■■■□□ 2.03
VTI1B-205ENST00000555543 ZNF827Q17R98 1081 aa27.73■■■□□ 2.03
VTI1B-205ENST00000555543 PLEKHO1Q53GL0 409 aaPredicted RBP27.73■■■□□ 2.03
VTI1B-205ENST00000555543 SLC27A3Q5K4L6 730 aa27.73■■■□□ 2.03
VTI1B-205ENST00000555543 ZNF530Q6P9A1 599 aaPredicted RBP27.71■■■□□ 2.03
VTI1B-205ENST00000555543 PIGBQ92521 554 aa27.71■■■□□ 2.03
VTI1B-205ENST00000555543 HMOX1P09601 288 aa27.7■■■□□ 2.02
VTI1B-205ENST00000555543 AMOTQ4VCS5 1084 aa27.7■■■□□ 2.02
VTI1B-205ENST00000555543 PALLDQ8WX93 1383 aa27.7■■■□□ 2.02
VTI1B-205ENST00000555543 KDM6AO15550 1401 aaPredicted RBP27.69■■■□□ 2.02
VTI1B-205ENST00000555543 CCNL1Q9UK58 526 aaPredicted RBP27.69■■■□□ 2.02
VTI1B-205ENST00000555543 AKT1S1Q96B36 256 aa27.68■■■□□ 2.02
VTI1B-205ENST00000555543 PPP2R1AP30153 589 aa27.67■■■□□ 2.02
VTI1B-205ENST00000555543 TMOD3Q9NYL9 352 aa27.66■■■□□ 2.02
VTI1B-205ENST00000555543 TUBGCP6Q96RT7 1819 aa27.66■■■□□ 2.02
VTI1B-205ENST00000555543 DCAF5Q96JK2 942 aa27.64■■■□□ 2.02
VTI1B-205ENST00000555543 C5P01031 1676 aa27.64■■■□□ 2.02
VTI1B-205ENST00000555543 HSP90AB1P08238 724 aaKnown RBP27.63■■■□□ 2.01
VTI1B-205ENST00000555543 QSER1Q2KHR3 1735 aa27.62■■■□□ 2.01
VTI1B-205ENST00000555543 U2SURPO15042 1029 aaKnown RBP27.62■■■□□ 2.01
VTI1B-205ENST00000555543 ZBTB7AO95365 584 aa27.62■■■□□ 2.01
VTI1B-205ENST00000555543 C1orf141Q5JVX7 400 aa27.62■■■□□ 2.01
VTI1B-205ENST00000555543 SMARCC1Q92922 1105 aaPredicted RBP27.62■■■□□ 2.01
VTI1B-205ENST00000555543 SPON1Q9HCB6 807 aa27.62■■■□□ 2.01
VTI1B-205ENST00000555543 ASAP1Q9ULH1 1129 aa27.61■■■□□ 2.01
VTI1B-205ENST00000555543 TAF1LQ8IZX4 1826 aa27.61■■■□□ 2.01
VTI1B-205ENST00000555543 ERVV-2B6SEH9 535 aa27.6■■■□□ 2.01
VTI1B-205ENST00000555543 CFAP53Q96M91 514 aa27.6■■■□□ 2.01
VTI1B-205ENST00000555543 PNPLA7Q6ZV29 1317 aa27.59■■■□□ 2.01
VTI1B-205ENST00000555543 DDX10Q13206 875 aaKnown RBP27.58■■■□□ 2.01
VTI1B-205ENST00000555543 ATG3Q9NT62 314 aa27.58■■■□□ 2.01
VTI1B-205ENST00000555543 SCN11AQ9UI33 1791 aa27.58■■■□□ 2
VTI1B-205ENST00000555543 MTHFSDQ2M296 383 aaKnown RBP27.57■■■□□ 2
VTI1B-205ENST00000555543 TFCP2L1Q9NZI6 479 aa27.57■■■□□ 2
VTI1B-205ENST00000555543 AKAP4Q5JQC9 854 aa27.56■■■□□ 2
VTI1B-205ENST00000555543 ATF5Q9Y2D1 282 aaPredicted RBP27.56■■■□□ 2
VTI1B-205ENST00000555543 C4BP0C0L5 1744 aa27.55■■■□□ 2
VTI1B-205ENST00000555543 LOC102724428A0A0B4J2F2 783 aa27.55■■■□□ 2
VTI1B-205ENST00000555543 SIK1P57059 783 aa27.55■■■□□ 2
VTI1B-205ENST00000555543 PTGER2P43116 358 aa27.54■■■□□ 2
VTI1B-205ENST00000555543 CABP4P57796 275 aa27.54■■■□□ 2
VTI1B-205ENST00000555543 ZEB1P37275 1124 aaPredicted RBP27.53■■■□□ 2
VTI1B-205ENST00000555543 MTFR1LQ9H019 292 aa27.53■■■□□ 2
VTI1B-205ENST00000555543 ADAMTS7Q9UKP4 1686 aa27.52■■■□□ 2
VTI1B-205ENST00000555543 LGR6Q9HBX8 967 aa27.52■■■□□ 2
VTI1B-205ENST00000555543 VIRMAQ69YN4 1812 aaKnown RBP27.52■■■□□ 2
VTI1B-205ENST00000555543 MRC1P22897 1456 aa27.51■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms