RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 DCTN1Q14203 1278 aa14.23□□□□□ -0.13
TDP1-211ENST00000555178 THUMPD2Q9BTF0 503 aaKnown RBP14.23□□□□□ -0.13
TDP1-211ENST00000555178 DISP2A7MBM2 1401 aa14.22□□□□□ -0.13
TDP1-211ENST00000555178 TRIM35Q9UPQ4 493 aa14.22□□□□□ -0.13
TDP1-211ENST00000555178 VPS72Q15906 364 aa14.22□□□□□ -0.13
TDP1-211ENST00000555178 ATRNO75882 1429 aa14.21□□□□□ -0.13
TDP1-211ENST00000555178 FAM98CQ17RN3 349 aaKnown RBP14.21□□□□□ -0.13
TDP1-211ENST00000555178 MAPK8IP3Q9UPT6 1336 aa14.2□□□□□ -0.14
TDP1-211ENST00000555178 OVOS2A0A0G2JMS6 1433 aa14.2□□□□□ -0.14
TDP1-211ENST00000555178 RIPK4P57078 832 aa14.2□□□□□ -0.14
TDP1-211ENST00000555178 NFE2L2Q16236 605 aa14.2□□□□□ -0.14
TDP1-211ENST00000555178 RAPGEF4Q8WZA2 1011 aa14.2□□□□□ -0.14
TDP1-211ENST00000555178 SPINK5Q9NQ38 1064 aaPredicted RBP14.2□□□□□ -0.14
TDP1-211ENST00000555178 LRRC37A3O60309 1634 aa14.2□□□□□ -0.14
TDP1-211ENST00000555178 KAT6BQ8WYB5 2073 aa14.2□□□□□ -0.14
TDP1-211ENST00000555178 BRWD3Q6RI45 1802 aa14.2□□□□□ -0.14
TDP1-211ENST00000555178 CYP27B1O15528 508 aa14.19□□□□□ -0.14
TDP1-211ENST00000555178 CENPBP07199 599 aaPredicted RBP14.19□□□□□ -0.14
TDP1-211ENST00000555178 IL2RBP14784 551 aa14.19□□□□□ -0.14
TDP1-211ENST00000555178 QTRT2Q9H974 415 aaKnown RBP14.19□□□□□ -0.14
TDP1-211ENST00000555178 EP400Q96L91 3159 aa14.19□□□□□ -0.14
TDP1-211ENST00000555178 TATP17735 454 aaPredicted RBP14.19□□□□□ -0.14
TDP1-211ENST00000555178 MCM10Q7L590 875 aa14.19□□□□□ -0.14
TDP1-211ENST00000555178 CDCA7LQ96GN5 454 aa14.19□□□□□ -0.14
TDP1-211ENST00000555178 ZNF530Q6P9A1 599 aaPredicted RBP14.18□□□□□ -0.14
TDP1-211ENST00000555178 GJD4Q96KN9 370 aaPredicted RBP14.18□□□□□ -0.14
TDP1-211ENST00000555178 PHF23Q9BUL5 403 aaPredicted RBP14.18□□□□□ -0.14
TDP1-211ENST00000555178 LGR6Q9HBX8 967 aa14.18□□□□□ -0.14
TDP1-211ENST00000555178 ZNF521Q96K83 1311 aa14.18□□□□□ -0.14
TDP1-211ENST00000555178 THSD7AQ9UPZ6 1657 aa14.17□□□□□ -0.14
TDP1-211ENST00000555178 POTEAQ6S8J7 498 aa14.17□□□□□ -0.14
TDP1-211ENST00000555178 WWC1Q8IX03 1113 aa14.17□□□□□ -0.14
TDP1-211ENST00000555178 SCN11AQ9UI33 1791 aa14.17□□□□□ -0.14
TDP1-211ENST00000555178 TOGARAM1Q9Y4F4 1720 aa14.17□□□□□ -0.14
TDP1-211ENST00000555178 FAM182BQ5T319 152 aa14.16□□□□□ -0.14
TDP1-211ENST00000555178 MPRIPQ6WCQ1 1025 aa14.16□□□□□ -0.14
TDP1-211ENST00000555178 IL17REQ8NFR9 667 aa14.16□□□□□ -0.14
TDP1-211ENST00000555178 DDX54Q8TDD1 881 aaKnown RBP14.16□□□□□ -0.14
TDP1-211ENST00000555178 PLEKHO1Q53GL0 409 aaPredicted RBP14.15□□□□□ -0.14
TDP1-211ENST00000555178 ZCRB1Q8TBF4 217 aaKnown RBP14.15□□□□□ -0.14
TDP1-211ENST00000555178 PNNQ9H307 717 aaKnown RBP14.15□□□□□ -0.14
TDP1-211ENST00000555178 TRPC5Q9UL62 973 aaPredicted RBP14.15□□□□□ -0.14
TDP1-211ENST00000555178 KDM6AO15550 1401 aaPredicted RBP14.15□□□□□ -0.14
TDP1-211ENST00000555178 PHKG2P15735 406 aa14.14□□□□□ -0.15
TDP1-211ENST00000555178 BARGINQ6ZT62 677 aa14.14□□□□□ -0.15
TDP1-211ENST00000555178 ADAMTS7Q9UKP4 1686 aa14.14□□□□□ -0.15
TDP1-211ENST00000555178 SIPA1L3O60292 1781 aaPredicted RBP14.14□□□□□ -0.15
TDP1-211ENST00000555178 ITGB4P16144 1822 aa14.14□□□□□ -0.15
TDP1-211ENST00000555178 MAP3K5Q99683 1374 aa14.13□□□□□ -0.15
TDP1-211ENST00000555178 MARCH10Q8NA82 808 aaPredicted RBP14.13□□□□□ -0.15
TDP1-211ENST00000555178 GAS2L2Q8NHY3 880 aa14.13□□□□□ -0.15
TDP1-211ENST00000555178 THRAP3Q9Y2W1 955 aaKnown RBP14.13□□□□□ -0.15
TDP1-211ENST00000555178 GNAT3A8MTJ3 354 aa14.13□□□□□ -0.15
TDP1-211ENST00000555178 NEFMP07197 916 aa14.13□□□□□ -0.15
TDP1-211ENST00000555178 AMOTQ4VCS5 1084 aa14.13□□□□□ -0.15
TDP1-211ENST00000555178 MIS18AQ9NYP9 233 aa14.13□□□□□ -0.15
TDP1-211ENST00000555178 SPG7Q9UQ90 795 aa14.12□□□□□ -0.15
TDP1-211ENST00000555178 TNS2Q63HR2 1409 aa14.12□□□□□ -0.15
TDP1-211ENST00000555178 A0A0G2JS52 829 aa14.11□□□□□ -0.15
TDP1-211ENST00000555178 MYT1Q01538 1121 aa14.11□□□□□ -0.15
TDP1-211ENST00000555178 AKAP4Q5JQC9 854 aa14.11□□□□□ -0.15
TDP1-211ENST00000555178 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.11□□□□□ -0.154e-6■■■□□ 19.2
TDP1-211ENST00000555178 DOT1LQ8TEK3 1739 aa14.11□□□□□ -0.15
TDP1-211ENST00000555178 EXOC5O00471 708 aa14.11□□□□□ -0.15
TDP1-211ENST00000555178 DDB1Q16531 1140 aa14.11□□□□□ -0.15
TDP1-211ENST00000555178 CCDC27Q2M243 656 aa14.11□□□□□ -0.15
TDP1-211ENST00000555178 RNMTO43148 476 aaKnown RBP14.1□□□□□ -0.15
TDP1-211ENST00000555178 ONECUT3O60422 494 aaPredicted RBP14.1□□□□□ -0.15
TDP1-211ENST00000555178 ZNF772Q68DY9 489 aaPredicted RBP14.1□□□□□ -0.15
TDP1-211ENST00000555178 SEPT12Q8IYM1 358 aa14.1□□□□□ -0.15
TDP1-211ENST00000555178 GOLGA2Q08379 1002 aa14.1□□□□□ -0.15
TDP1-211ENST00000555178 C1orf141Q5JVX7 400 aa14.1□□□□□ -0.15
TDP1-211ENST00000555178 PTF1AQ7RTS3 328 aa14.1□□□□□ -0.15
TDP1-211ENST00000555178 IFNL2Q8IZJ0 200 aa14.1□□□□□ -0.15
TDP1-211ENST00000555178 TSR2Q969E8 191 aaKnown RBP14.1□□□□□ -0.15
TDP1-211ENST00000555178 PCDH11XQ9BZA7 1347 aa14.09□□□□□ -0.15
TDP1-211ENST00000555178 PCDH11YQ9BZA8 1340 aa14.09□□□□□ -0.15
TDP1-211ENST00000555178 CEMIPQ8WUJ3 1361 aa14.09□□□□□ -0.15
TDP1-211ENST00000555178 LAS1LQ9Y4W2 734 aaKnown RBP14.09□□□□□ -0.15
TDP1-211ENST00000555178 SBF2Q86WG5 1849 aa14.08□□□□□ -0.15
TDP1-211ENST00000555178 KCNQ3O43525 872 aa14.08□□□□□ -0.16
TDP1-211ENST00000555178 RBM6P78332 1123 aaKnown RBP14.07□□□□□ -0.16
TDP1-211ENST00000555178 SLFN5Q08AF3 891 aa14.07□□□□□ -0.16
TDP1-211ENST00000555178 PDE3BQ13370 1112 aa14.07□□□□□ -0.16
TDP1-211ENST00000555178 NKX1-1Q15270 411 aaPredicted RBP14.07□□□□□ -0.16
TDP1-211ENST00000555178 KRT24Q2M2I5 525 aa14.07□□□□□ -0.16
TDP1-211ENST00000555178 DUSP27Q5VZP5 1158 aa14.07□□□□□ -0.16
TDP1-211ENST00000555178 NGEFQ8N5V2 710 aa14.07□□□□□ -0.16
TDP1-211ENST00000555178 RTF1Q92541 710 aaKnown RBP14.07□□□□□ -0.16
TDP1-211ENST00000555178 ACSBG1Q96GR2 724 aa14.07□□□□□ -0.16
TDP1-211ENST00000555178 KDM3BQ7LBC6 1761 aa14.06□□□□□ -0.16
TDP1-211ENST00000555178 RGS12O14924 1447 aa14.06□□□□□ -0.16
TDP1-211ENST00000555178 ZNF853P0CG23 659 aa14.06□□□□□ -0.16
TDP1-211ENST00000555178 TRMT2AQ8IZ69 625 aaKnown RBP14.06□□□□□ -0.16
TDP1-211ENST00000555178 NFATC2IPQ8NCF5 419 aa14.06□□□□□ -0.16
TDP1-211ENST00000555178 KCNQ2O43526 872 aa14.06□□□□□ -0.16
TDP1-211ENST00000555178 WDR63Q8IWG1 891 aa14.06□□□□□ -0.16
TDP1-211ENST00000555178 CDCA7Q9BWT1 371 aaPredicted RBP14.06□□□□□ -0.16
TDP1-211ENST00000555178 RXRBP28702 533 aa14.05□□□□□ -0.16
TDP1-211ENST00000555178 NCBP3Q53F19 620 aaKnown RBP14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms