RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 NSD2O96028 1365 aa15.36■□□□□ 0.05
SHMT2-216ENST00000554975 TAF1LQ8IZX4 1826 aa15.36■□□□□ 0.05
SHMT2-216ENST00000554975 L3MBTL2Q969R5 705 aa15.36■□□□□ 0.05
SHMT2-216ENST00000554975 ZNF692Q9BU19 519 aaPredicted RBP15.36■□□□□ 0.05
SHMT2-216ENST00000554975 KTN1Q86UP2 1357 aaKnown RBP15.36■□□□□ 0.05
SHMT2-216ENST00000554975 C5P01031 1676 aa15.35■□□□□ 0.05
SHMT2-216ENST00000554975 FAM208AQ9UK61 1670 aaKnown RBP15.35■□□□□ 0.05
SHMT2-216ENST00000554975 MSL1Q68DK7 614 aa15.35■□□□□ 0.05
SHMT2-216ENST00000554975 ANKRD24Q8TF21 1146 aa15.35■□□□□ 0.05
SHMT2-216ENST00000554975 GPBP1L1Q9HC44 474 aaPredicted RBP15.35■□□□□ 0.05
SHMT2-216ENST00000554975 EVC2Q86UK5 1308 aa15.35■□□□□ 0.05
SHMT2-216ENST00000554975 COL23A1Q86Y22 540 aaPredicted RBP15.34■□□□□ 0.05
SHMT2-216ENST00000554975 DDX54Q8TDD1 881 aaKnown RBP15.34■□□□□ 0.05
SHMT2-216ENST00000554975 USP31Q70CQ4 1352 aa15.34■□□□□ 0.05
SHMT2-216ENST00000554975 NME9Q86XW9 330 aa15.33■□□□□ 0.04
SHMT2-216ENST00000554975 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.33■□□□□ 0.04
SHMT2-216ENST00000554975 YTHDC1Q96MU7 727 aaKnown RBP15.33■□□□□ 0.04
SHMT2-216ENST00000554975 PRIM1P49642 420 aaKnown RBP15.32■□□□□ 0.04
SHMT2-216ENST00000554975 CD163L1Q9NR16 1453 aa15.32■□□□□ 0.04
SHMT2-216ENST00000554975 TOGARAM1Q9Y4F4 1720 aa15.31■□□□□ 0.04
SHMT2-216ENST00000554975 MSH5O43196 834 aa15.31■□□□□ 0.04
SHMT2-216ENST00000554975 SYTL4Q96C24 671 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-216ENST00000554975 ANKRD36BQ8N2N9 1353 aa15.31■□□□□ 0.04
SHMT2-216ENST00000554975 WWC3Q9ULE0 1092 aa15.3■□□□□ 0.04
SHMT2-216ENST00000554975 SBNO2Q9Y2G9 1366 aa15.3■□□□□ 0.04
SHMT2-216ENST00000554975 KIF3CO14782 793 aa15.29■□□□□ 0.04
SHMT2-216ENST00000554975 CCNL1Q9UK58 526 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-216ENST00000554975 GTF3C3Q9Y5Q9 886 aa15.29■□□□□ 0.04
SHMT2-216ENST00000554975 UBR3Q6ZT12 1888 aa15.29■□□□□ 0.04
SHMT2-216ENST00000554975 CCER2I3L3R5 266 aa15.28■□□□□ 0.04
SHMT2-216ENST00000554975 MEGF6O75095 1541 aa15.27■□□□□ 0.04
SHMT2-216ENST00000554975 LTV1Q96GA3 475 aaPredicted RBP15.27■□□□□ 0.04
SHMT2-216ENST00000554975 ANP32CO43423 234 aa15.26■□□□□ 0.03
SHMT2-216ENST00000554975 CD2APQ9Y5K6 639 aa15.26■□□□□ 0.03
SHMT2-216ENST00000554975 ITGB4P16144 1822 aa15.26■□□□□ 0.03
SHMT2-216ENST00000554975 ROCK2O75116 1388 aaKnown RBP15.25■□□□□ 0.03
SHMT2-216ENST00000554975 EIF4G2P78344 907 aaKnown RBP eCLIP15.25■□□□□ 0.03
SHMT2-216ENST00000554975 AMIGO3Q86WK7 504 aa15.25■□□□□ 0.03
SHMT2-216ENST00000554975 C4BP0C0L5 1744 aa15.25■□□□□ 0.03
SHMT2-216ENST00000554975 WDR90Q96KV7 1748 aa15.25■□□□□ 0.03
SHMT2-216ENST00000554975 KIAA1551Q9HCM1 1747 aa15.24■□□□□ 0.03
SHMT2-216ENST00000554975 DNAJC5GQ8N7S2 189 aa15.24■□□□□ 0.03
SHMT2-216ENST00000554975 CICQ96RK0 1608 aaPredicted RBP15.24■□□□□ 0.03
SHMT2-216ENST00000554975 IGSF1Q8N6C5 1336 aa15.23■□□□□ 0.03
SHMT2-216ENST00000554975 SMIM5Q71RC9 77 aa15.23■□□□□ 0.03
SHMT2-216ENST00000554975 IP6K1Q92551 441 aa15.23■□□□□ 0.03
SHMT2-216ENST00000554975 N4BP2Q86UW6 1770 aaPredicted RBP15.23■□□□□ 0.03
SHMT2-216ENST00000554975 USP47Q96K76 1375 aa15.23■□□□□ 0.03
SHMT2-216ENST00000554975 DDX10Q13206 875 aaKnown RBP15.22■□□□□ 0.03
SHMT2-216ENST00000554975 EDC4Q6P2E9 1401 aaKnown RBP15.21■□□□□ 0.03
SHMT2-216ENST00000554975 FBLN1P23142 703 aa15.21■□□□□ 0.03
SHMT2-216ENST00000554975 ZCRB1Q8TBF4 217 aaKnown RBP15.21■□□□□ 0.03
SHMT2-216ENST00000554975 KIF13BQ9NQT8 1826 aa15.21■□□□□ 0.03
SHMT2-216ENST00000554975 MAP2P11137 1827 aaKnown RBP15.2■□□□□ 0.02
SHMT2-216ENST00000554975 APLP1P51693 650 aa15.2■□□□□ 0.02
SHMT2-216ENST00000554975 SLC12A5Q9H2X9 1139 aa15.2■□□□□ 0.02
SHMT2-216ENST00000554975 PCNTO95613 3336 aa15.19■□□□□ 0.02
SHMT2-216ENST00000554975 A0A1W2PP64 1363 aa15.19■□□□□ 0.02
SHMT2-216ENST00000554975 MAP3K19Q56UN5 1328 aa15.18■□□□□ 0.02
SHMT2-216ENST00000554975 TMC1Q8TDI8 760 aa15.18■□□□□ 0.02
SHMT2-216ENST00000554975 BRCA1P38398 1863 aaKnown RBP15.18■□□□□ 0.02
SHMT2-216ENST00000554975 PALLDQ8WX93 1383 aa15.17■□□□□ 0.02
SHMT2-216ENST00000554975 HOXC9P31274 260 aa15.17■□□□□ 0.02
SHMT2-216ENST00000554975 HTRA3P83110 453 aa15.17■□□□□ 0.02
SHMT2-216ENST00000554975 COL13A1Q5TAT6 717 aaPredicted RBP15.17■□□□□ 0.02
SHMT2-216ENST00000554975 USHBP1Q8N6Y0 703 aa15.17■□□□□ 0.02
SHMT2-216ENST00000554975 CARD11Q9BXL7 1154 aa15.17■□□□□ 0.02
SHMT2-216ENST00000554975 PHF14O94880 888 aa15.16■□□□□ 0.02
SHMT2-216ENST00000554975 CAPN15O75808 1086 aa15.15■□□□□ 0.02
SHMT2-216ENST00000554975 HSPA5P11021 654 aaKnown RBP15.15■□□□□ 0.02
SHMT2-216ENST00000554975 NBPF6Q5VWK0 638 aa15.15■□□□□ 0.02
SHMT2-216ENST00000554975 HDGFL2Q7Z4V5 671 aaPredicted RBP15.15■□□□□ 0.02
SHMT2-216ENST00000554975 FLAD1Q8NFF5 587 aa15.15■□□□□ 0.02
SHMT2-216ENST00000554975 NBPF4Q96M43 638 aa15.15■□□□□ 0.02
SHMT2-216ENST00000554975 NMRK2Q9NPI5 230 aa15.14■□□□□ 0.01
SHMT2-216ENST00000554975 PXDNLA1KZ92 1463 aa15.14■□□□□ 0.01
SHMT2-216ENST00000554975 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.13■□□□□ 0.01
SHMT2-216ENST00000554975 TOMM70O94826 608 aa15.13■□□□□ 0.01
SHMT2-216ENST00000554975 PKD1L3Q7Z443 1732 aa15.13■□□□□ 0.01
SHMT2-216ENST00000554975 MPRIPQ6WCQ1 1025 aa15.12■□□□□ 0.01
SHMT2-216ENST00000554975 AK7Q96M32 723 aa15.12■□□□□ 0.01
SHMT2-216ENST00000554975 ARFGEF1Q9Y6D6 1849 aa15.11■□□□□ 0.01
SHMT2-216ENST00000554975 AMPHP49418 695 aa15.11■□□□□ 0.01
SHMT2-216ENST00000554975 CYP27B1O15528 508 aa15.09■□□□□ 0.01
SHMT2-216ENST00000554975 RRS1Q15050 365 aaKnown RBP15.09■□□□□ 0.01
SHMT2-216ENST00000554975 LINC00116Q8NCU8 138 aa15.09■□□□□ 0.01
SHMT2-216ENST00000554975 KLRG1Q96E93 195 aa15.09■□□□□ 0.01
SHMT2-216ENST00000554975 TERF2IPQ9NYB0 399 aa15.09■□□□□ 0.01
SHMT2-216ENST00000554975 SBF1O95248 1867 aa15.09■□□□□ 0.01
SHMT2-216ENST00000554975 JMYQ8N9B5 988 aa15.08■□□□□ 0
SHMT2-216ENST00000554975 WASHC2AQ641Q2 1341 aa15.08■□□□□ 0
SHMT2-216ENST00000554975 RTL1A6NKG5 1358 aa15.08■□□□□ 0
SHMT2-216ENST00000554975 RAPGEF4Q8WZA2 1011 aa15.07■□□□□ 0
SHMT2-216ENST00000554975 PIGBQ92521 554 aa15.07■□□□□ 0
SHMT2-216ENST00000554975 COG3Q96JB2 828 aa15.07■□□□□ 0
SHMT2-216ENST00000554975 CGNL1Q0VF96 1302 aa15.07■□□□□ 0
SHMT2-216ENST00000554975 PCDH11XQ9BZA7 1347 aa15.07■□□□□ 0
SHMT2-216ENST00000554975 PCDH11YQ9BZA8 1340 aa15.07■□□□□ 0
SHMT2-216ENST00000554975 A0A0G2JLW4 131 aa15.06■□□□□ 0
SHMT2-216ENST00000554975 TATP17735 454 aaPredicted RBP15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms