RNA–Protein interactions for RNA: ENST00000554685.2

SHOX2-206, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-206ENST00000554685 RGPD2P0DJD1 1756 aa18.85■□□□□ 0.61
SHOX2-206ENST00000554685 RRP7AQ9Y3A4 280 aaKnown RBP18.84■□□□□ 0.61
SHOX2-206ENST00000554685 NRAPQ86VF7 1730 aa18.83■□□□□ 0.61
SHOX2-206ENST00000554685 CALD1Q05682 793 aaKnown RBP18.83■□□□□ 0.6
SHOX2-206ENST00000554685 UNC5CLQ8IV45 518 aa18.83■□□□□ 0.6
SHOX2-206ENST00000554685 FNBP4Q8N3X1 1017 aaPredicted RBP18.83■□□□□ 0.6
SHOX2-206ENST00000554685 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.83■□□□□ 0.6
SHOX2-206ENST00000554685 ZNF521Q96K83 1311 aa18.82■□□□□ 0.6
SHOX2-206ENST00000554685 MTHFSDQ2M296 383 aaKnown RBP18.82■□□□□ 0.6
SHOX2-206ENST00000554685 WDR63Q8IWG1 891 aa18.82■□□□□ 0.6
SHOX2-206ENST00000554685 WWC1Q8IX03 1113 aa18.82■□□□□ 0.6
SHOX2-206ENST00000554685 SPG7Q9UQ90 795 aa18.82■□□□□ 0.6
SHOX2-206ENST00000554685 THRAP3Q9Y2W1 955 aaKnown RBP18.82■□□□□ 0.6
SHOX2-206ENST00000554685 SENP3-EIF4A1A0A087X0R7 540 aa18.81■□□□□ 0.6
SHOX2-206ENST00000554685 HTATSF1O43719 755 aaKnown RBP18.81■□□□□ 0.6
SHOX2-206ENST00000554685 IL2RBP14784 551 aa18.81■□□□□ 0.6
SHOX2-206ENST00000554685 GOLGA2Q08379 1002 aa18.81■□□□□ 0.6
SHOX2-206ENST00000554685 RTF1Q92541 710 aaKnown RBP18.8■□□□□ 0.6
SHOX2-206ENST00000554685 CDCA7Q9BWT1 371 aaPredicted RBP18.8■□□□□ 0.6
SHOX2-206ENST00000554685 OVOS2A0A0G2JMS6 1433 aa18.8■□□□□ 0.6
SHOX2-206ENST00000554685 USP21Q9UK80 565 aa18.79■□□□□ 0.6
SHOX2-206ENST00000554685 TRIM35Q9UPQ4 493 aa18.79■□□□□ 0.6
SHOX2-206ENST00000554685 PARP4Q9UKK3 1724 aaKnown RBP18.79■□□□□ 0.6
SHOX2-206ENST00000554685 MAP3K5Q99683 1374 aa18.79■□□□□ 0.6
SHOX2-206ENST00000554685 MEGF6O75095 1541 aa18.79■□□□□ 0.6
SHOX2-206ENST00000554685 IL16Q14005 1332 aa18.78■□□□□ 0.6
SHOX2-206ENST00000554685 GNAT3A8MTJ3 354 aa18.78■□□□□ 0.6
SHOX2-206ENST00000554685 VPS72Q15906 364 aa18.78■□□□□ 0.6
SHOX2-206ENST00000554685 AKAP4Q5JQC9 854 aa18.78■□□□□ 0.6
SHOX2-206ENST00000554685 C1orf141Q5JVX7 400 aa18.78■□□□□ 0.6
SHOX2-206ENST00000554685 ZNF530Q6P9A1 599 aaPredicted RBP18.78■□□□□ 0.6
SHOX2-206ENST00000554685 BCL9LQ86UU0 1499 aa18.77■□□□□ 0.6
SHOX2-206ENST00000554685 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.77■□□□□ 0.6
SHOX2-206ENST00000554685 SPATA31A1Q5TZJ5 1347 aa18.77■□□□□ 0.6
SHOX2-206ENST00000554685 SPATA31A5Q5VU36 1347 aa18.77■□□□□ 0.6
SHOX2-206ENST00000554685 SPATA31A7Q8IWB4 1347 aa18.77■□□□□ 0.6
SHOX2-206ENST00000554685 E9PSI1 815 aa18.77■□□□□ 0.6
SHOX2-206ENST00000554685 CCDC9Q9Y3X0 531 aaKnown RBP18.77■□□□□ 0.6
SHOX2-206ENST00000554685 USP35Q9P2H5 1018 aa18.76■□□□□ 0.59
SHOX2-206ENST00000554685 AFF2P51816 1311 aa18.75■□□□□ 0.59
SHOX2-206ENST00000554685 ZCRB1Q8TBF4 217 aaKnown RBP18.75■□□□□ 0.59
SHOX2-206ENST00000554685 PCDH11XQ9BZA7 1347 aa18.74■□□□□ 0.59
SHOX2-206ENST00000554685 PCDH11YQ9BZA8 1340 aa18.74■□□□□ 0.59
SHOX2-206ENST00000554685 DISP2A7MBM2 1401 aa18.74■□□□□ 0.59
SHOX2-206ENST00000554685 PKD1L3Q7Z443 1732 aa18.74■□□□□ 0.59
SHOX2-206ENST00000554685 HSP90AB1P08238 724 aaKnown RBP18.74■□□□□ 0.59
SHOX2-206ENST00000554685 BARGINQ6ZT62 677 aa18.74■□□□□ 0.59
SHOX2-206ENST00000554685 IFNL2Q8IZJ0 200 aa18.74■□□□□ 0.59
SHOX2-206ENST00000554685 MYH16Q9H6N6 1097 aa18.74■□□□□ 0.59
SHOX2-206ENST00000554685 SLFN5Q08AF3 891 aa18.73■□□□□ 0.59
SHOX2-206ENST00000554685 TRPC5Q9UL62 973 aaPredicted RBP18.72■□□□□ 0.59
SHOX2-206ENST00000554685 DLG5Q8TDM6 1919 aa18.72■□□□□ 0.59
SHOX2-206ENST00000554685 GNAI1P63096 354 aa18.71■□□□□ 0.59
SHOX2-206ENST00000554685 NPM3O75607 178 aaKnown RBP18.7■□□□□ 0.58
SHOX2-206ENST00000554685 PHKG2P15735 406 aa18.7■□□□□ 0.58
SHOX2-206ENST00000554685 CDCA7LQ96GN5 454 aa18.7■□□□□ 0.58
SHOX2-206ENST00000554685 IFT57Q9NWB7 429 aa18.7■□□□□ 0.58
SHOX2-206ENST00000554685 WNK3Q9BYP7 1800 aa18.7■□□□□ 0.58
SHOX2-206ENST00000554685 ATRNO75882 1429 aa18.69■□□□□ 0.58
SHOX2-206ENST00000554685 EXOC5O00471 708 aa18.69■□□□□ 0.58
SHOX2-206ENST00000554685 MCM10Q7L590 875 aa18.69■□□□□ 0.58
SHOX2-206ENST00000554685 TRMT2AQ8IZ69 625 aaKnown RBP18.69■□□□□ 0.58
SHOX2-206ENST00000554685 CEMIPQ8WUJ3 1361 aa18.68■□□□□ 0.58
SHOX2-206ENST00000554685 TNS2Q63HR2 1409 aa18.68■□□□□ 0.58
SHOX2-206ENST00000554685 DCTN1Q14203 1278 aa18.68■□□□□ 0.58
SHOX2-206ENST00000554685 DUSP27Q5VZP5 1158 aa18.68■□□□□ 0.58
SHOX2-206ENST00000554685 DCAF5Q96JK2 942 aa18.68■□□□□ 0.58
SHOX2-206ENST00000554685 CFAP44Q96MT7 982 aa18.68■□□□□ 0.58
SHOX2-206ENST00000554685 RNMTO43148 476 aaKnown RBP18.67■□□□□ 0.58
SHOX2-206ENST00000554685 ZNF772Q68DY9 489 aaPredicted RBP18.67■□□□□ 0.58
SHOX2-206ENST00000554685 GJD4Q96KN9 370 aaPredicted RBP18.67■□□□□ 0.58
SHOX2-206ENST00000554685 THUMPD2Q9BTF0 503 aaKnown RBP18.67■□□□□ 0.58
SHOX2-206ENST00000554685 BABAM1Q9NWV8 329 aa18.67■□□□□ 0.58
SHOX2-206ENST00000554685 LRRC37A3O60309 1634 aa18.67■□□□□ 0.58
SHOX2-206ENST00000554685 CYP27B1O15528 508 aa18.66■□□□□ 0.58
SHOX2-206ENST00000554685 TEFQ10587 303 aa18.66■□□□□ 0.58
SHOX2-206ENST00000554685 DDB1Q16531 1140 aa18.66■□□□□ 0.58
SHOX2-206ENST00000554685 IL17REQ8NFR9 667 aa18.66■□□□□ 0.58
SHOX2-206ENST00000554685 ZNF853P0CG23 659 aa18.65■□□□□ 0.58
SHOX2-206ENST00000554685 NKX1-1Q15270 411 aaPredicted RBP18.65■□□□□ 0.58
SHOX2-206ENST00000554685 MPRIPQ6WCQ1 1025 aa18.65■□□□□ 0.58
SHOX2-206ENST00000554685 SPINK5Q9NQ38 1064 aaPredicted RBP18.65■□□□□ 0.58
SHOX2-206ENST00000554685 LAS1LQ9Y4W2 734 aaKnown RBP18.65■□□□□ 0.58
SHOX2-206ENST00000554685 DDX54Q8TDD1 881 aaKnown RBP18.64■□□□□ 0.57
SHOX2-206ENST00000554685 QTRT2Q9H974 415 aaKnown RBP18.64■□□□□ 0.57
SHOX2-206ENST00000554685 FANCIQ9NVI1 1328 aa18.64■□□□□ 0.57
SHOX2-206ENST00000554685 ADAMTS7Q9UKP4 1686 aa18.63■□□□□ 0.57
SHOX2-206ENST00000554685 CHL1O00533 1208 aa18.63■□□□□ 0.57
SHOX2-206ENST00000554685 TAF7Q15545 349 aaPredicted RBP18.63■□□□□ 0.57
SHOX2-206ENST00000554685 FAM98CQ17RN3 349 aaKnown RBP18.63■□□□□ 0.57
SHOX2-206ENST00000554685 CT47B1P0C2W7 299 aaPredicted RBP18.62■□□□□ 0.57
SHOX2-206ENST00000554685 LGR6Q9HBX8 967 aa18.62■□□□□ 0.57
SHOX2-206ENST00000554685 KDM6AO15550 1401 aaPredicted RBP18.62■□□□□ 0.57
SHOX2-206ENST00000554685 GLI3P10071 1580 aa18.61■□□□□ 0.57
SHOX2-206ENST00000554685 A0A0G2JS52 829 aa18.61■□□□□ 0.57
SHOX2-206ENST00000554685 ERVV-2B6SEH9 535 aa18.61■□□□□ 0.57
SHOX2-206ENST00000554685 MYT1Q01538 1121 aa18.61■□□□□ 0.57
SHOX2-206ENST00000554685 TSPYL4Q9UJ04 414 aa18.61■□□□□ 0.57
SHOX2-206ENST00000554685 SHANK3Q9BYB0 1731 aa18.6■□□□□ 0.57
SHOX2-206ENST00000554685 MRC1P22897 1456 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms