RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 KIF24Q5T7B8 1368 aa16.37■□□□□ 0.21
VIPAS39-206ENST00000553888 KCNH5Q8NCM2 988 aa16.37■□□□□ 0.21
VIPAS39-206ENST00000553888 AXIN2Q9Y2T1 843 aa16.37■□□□□ 0.21
VIPAS39-206ENST00000553888 MSH6P52701 1360 aa16.37■□□□□ 0.21
VIPAS39-206ENST00000553888 MED1Q15648 1581 aaPredicted RBP16.37■□□□□ 0.21
VIPAS39-206ENST00000553888 RTL1A6NKG5 1358 aa16.37■□□□□ 0.21
VIPAS39-206ENST00000553888 IGHDP01880 384 aa16.36■□□□□ 0.21
VIPAS39-206ENST00000553888 CADPS2Q86UW7 1296 aa16.36■□□□□ 0.21
VIPAS39-206ENST00000553888 ARHGEF25Q86VW2 580 aa16.36■□□□□ 0.21
VIPAS39-206ENST00000553888 TWISTNBQ3B726 338 aaPredicted RBP16.35■□□□□ 0.21
VIPAS39-206ENST00000553888 FTSJ3Q8IY81 847 aaKnown RBP16.35■□□□□ 0.21
VIPAS39-206ENST00000553888 DCCP43146 1447 aa16.35■□□□□ 0.21
VIPAS39-206ENST00000553888 DZIP1LQ8IYY4 767 aaKnown RBP16.35■□□□□ 0.21
VIPAS39-206ENST00000553888 USP19O94966 1318 aa16.35■□□□□ 0.21
VIPAS39-206ENST00000553888 CRB1P82279 1406 aa16.35■□□□□ 0.21
VIPAS39-206ENST00000553888 PHRF1Q9P1Y6 1649 aaKnown RBP16.34■□□□□ 0.21
VIPAS39-206ENST00000553888 ATF7IPQ6VMQ6 1270 aa16.34■□□□□ 0.21
VIPAS39-206ENST00000553888 PCDHB15Q9Y5E8 787 aa16.33■□□□□ 0.21
VIPAS39-206ENST00000553888 CHL1O00533 1208 aa16.33■□□□□ 0.2
VIPAS39-206ENST00000553888 RTF1Q92541 710 aaKnown RBP16.33■□□□□ 0.2
VIPAS39-206ENST00000553888 NCOA3Q9Y6Q9 1424 aa16.33■□□□□ 0.2
VIPAS39-206ENST00000553888 MVPQ14764 893 aaKnown RBP16.32■□□□□ 0.2
VIPAS39-206ENST00000553888 BRINP3Q76B58 766 aa16.32■□□□□ 0.2
VIPAS39-206ENST00000553888 CENPQQ7L2Z9 268 aaPredicted RBP16.32■□□□□ 0.2
VIPAS39-206ENST00000553888 TMEM57Q8N5G2 664 aa16.32■□□□□ 0.2
VIPAS39-206ENST00000553888 MRPL50Q8N5N7 158 aaKnown RBP16.32■□□□□ 0.2
VIPAS39-206ENST00000553888 ALDH1L2Q3SY69 923 aa16.32■□□□□ 0.2
VIPAS39-206ENST00000553888 ITPRIPQ8IWB1 547 aa16.32■□□□□ 0.2
VIPAS39-206ENST00000553888 GAS2L2Q8NHY3 880 aa16.32■□□□□ 0.2
VIPAS39-206ENST00000553888 ANKRD24Q8TF21 1146 aa16.32■□□□□ 0.2
VIPAS39-206ENST00000553888 PXDNQ92626 1479 aa16.31■□□□□ 0.2
VIPAS39-206ENST00000553888 ARXQ96QS3 562 aa16.31■□□□□ 0.2
VIPAS39-206ENST00000553888 IL17REQ8NFR9 667 aa16.3■□□□□ 0.2
VIPAS39-206ENST00000553888 NPHP3Q7Z494 1330 aa16.3■□□□□ 0.2
VIPAS39-206ENST00000553888 GNAT3A8MTJ3 354 aa16.29■□□□□ 0.2
VIPAS39-206ENST00000553888 CHRNA2Q15822 529 aa16.29■□□□□ 0.2
VIPAS39-206ENST00000553888 KIF16BQ96L93 1317 aa16.29■□□□□ 0.2
VIPAS39-206ENST00000553888 TSPYL4Q9UJ04 414 aa16.29■□□□□ 0.2
VIPAS39-206ENST00000553888 LRRC37A3O60309 1634 aa16.28■□□□□ 0.2
VIPAS39-206ENST00000553888 MAP3K5Q99683 1374 aa16.28■□□□□ 0.2
VIPAS39-206ENST00000553888 TNS3Q68CZ2 1445 aa16.28■□□□□ 0.2
VIPAS39-206ENST00000553888 VIRMAQ69YN4 1812 aaKnown RBP16.28■□□□□ 0.2
VIPAS39-206ENST00000553888 RGS3P49796 1198 aa16.27■□□□□ 0.2
VIPAS39-206ENST00000553888 SLAIN2Q9P270 581 aa16.27■□□□□ 0.2
VIPAS39-206ENST00000553888 CRYBG1Q9Y4K1 1723 aa16.27■□□□□ 0.19
VIPAS39-206ENST00000553888 SPATA31A3Q5VYP0 1347 aa16.27■□□□□ 0.19
VIPAS39-206ENST00000553888 LGR6Q9HBX8 967 aa16.26■□□□□ 0.19
VIPAS39-206ENST00000553888 IPO8O15397 1037 aaKnown RBP16.25■□□□□ 0.19
VIPAS39-206ENST00000553888 COL18A1P39060 1754 aa16.25■□□□□ 0.19
VIPAS39-206ENST00000553888 ZNF428Q96B54 188 aa16.25■□□□□ 0.19
VIPAS39-206ENST00000553888 ERBB3P21860 1342 aa16.25■□□□□ 0.19
VIPAS39-206ENST00000553888 UBE2Q2Q8WVN8 375 aa16.24■□□□□ 0.19
VIPAS39-206ENST00000553888 NECTIN2Q92692 538 aa16.24■□□□□ 0.19
VIPAS39-206ENST00000553888 BRPF1P55201 1214 aaPredicted RBP16.24■□□□□ 0.19
VIPAS39-206ENST00000553888 ANO8Q9HCE9 1232 aaPredicted RBP16.24■□□□□ 0.19
VIPAS39-206ENST00000553888 ZNF530Q6P9A1 599 aaPredicted RBP16.23■□□□□ 0.19
VIPAS39-206ENST00000553888 MPRIPQ6WCQ1 1025 aa16.23■□□□□ 0.19
VIPAS39-206ENST00000553888 MS4A1P11836 297 aa16.23■□□□□ 0.19
VIPAS39-206ENST00000553888 KIAA0232Q92628 1395 aa16.23■□□□□ 0.19
VIPAS39-206ENST00000553888 DDX19BQ9UMR2 479 aa16.23■□□□□ 0.19
VIPAS39-206ENST00000553888 CAMTA1Q9Y6Y1 1673 aa16.23■□□□□ 0.19
VIPAS39-206ENST00000553888 C1orf115Q9H7X2 142 aa16.22■□□□□ 0.19
VIPAS39-206ENST00000553888 NLRP2Q9NX02 1062 aa16.22■□□□□ 0.19
VIPAS39-206ENST00000553888 HTATSF1O43719 755 aaKnown RBP16.22■□□□□ 0.19
VIPAS39-206ENST00000553888 LMO7Q8WWI1 1683 aa16.22■□□□□ 0.19
VIPAS39-206ENST00000553888 PDE4AP27815 886 aa16.21■□□□□ 0.18
VIPAS39-206ENST00000553888 G2E3Q7L622 706 aa16.21■□□□□ 0.18
VIPAS39-206ENST00000553888 ZBTB40Q9NUA8 1239 aa16.21■□□□□ 0.18
VIPAS39-206ENST00000553888 NCAPD2Q15021 1401 aa16.21■□□□□ 0.18
VIPAS39-206ENST00000553888 KCNQ3O43525 872 aa16.2■□□□□ 0.18
VIPAS39-206ENST00000553888 ABCC4O15439 1325 aa16.19■□□□□ 0.18
VIPAS39-206ENST00000553888 SLC4A2P04920 1241 aa16.19■□□□□ 0.18
VIPAS39-206ENST00000553888 CSB-PGBD3P0DP91 1061 aa16.19■□□□□ 0.18
VIPAS39-206ENST00000553888 TAF7Q15545 349 aaPredicted RBP16.19■□□□□ 0.18
VIPAS39-206ENST00000553888 FAM208AQ9UK61 1670 aaKnown RBP16.19■□□□□ 0.18
VIPAS39-206ENST00000553888 TULP1O00294 542 aaPredicted RBP16.19■□□□□ 0.18
VIPAS39-206ENST00000553888 PLEKHO1Q53GL0 409 aaPredicted RBP16.19■□□□□ 0.18
VIPAS39-206ENST00000553888 RGS12O14924 1447 aa16.19■□□□□ 0.18
VIPAS39-206ENST00000553888 ARHGAP45Q92619 1136 aa16.18■□□□□ 0.18
VIPAS39-206ENST00000553888 CEMIPQ8WUJ3 1361 aa16.18■□□□□ 0.18
VIPAS39-206ENST00000553888 SOS2Q07890 1332 aaPredicted RBP16.18■□□□□ 0.18
VIPAS39-206ENST00000553888 ZBTB7BO15156 539 aaPredicted RBP16.18■□□□□ 0.18
VIPAS39-206ENST00000553888 AKAP4Q5JQC9 854 aa16.17■□□□□ 0.18
VIPAS39-206ENST00000553888 MEGF6O75095 1541 aa16.17■□□□□ 0.18
VIPAS39-206ENST00000553888 BACH2Q9BYV9 841 aa16.17■□□□□ 0.18
VIPAS39-206ENST00000553888 PDZRN3Q9UPQ7 1066 aa16.17■□□□□ 0.18
VIPAS39-206ENST00000553888 RWDD1Q9H446 243 aaPredicted RBP16.16■□□□□ 0.18
VIPAS39-206ENST00000553888 KDM3BQ7LBC6 1761 aa16.16■□□□□ 0.18
VIPAS39-206ENST00000553888 F6X3S4 739 aa16.16■□□□□ 0.18
VIPAS39-206ENST00000553888 AAMPQ13685 434 aa16.16■□□□□ 0.18
VIPAS39-206ENST00000553888 C1orf141Q5JVX7 400 aa16.16■□□□□ 0.18
VIPAS39-206ENST00000553888 ABCA3Q99758 1704 aa16.16■□□□□ 0.18
VIPAS39-206ENST00000553888 RNMTO43148 476 aaKnown RBP16.15■□□□□ 0.18
VIPAS39-206ENST00000553888 API5Q9BZZ5 524 aaKnown RBP16.15■□□□□ 0.18
VIPAS39-206ENST00000553888 HAP1P54257 671 aaPredicted RBP16.15■□□□□ 0.18
VIPAS39-206ENST00000553888 AMOTQ4VCS5 1084 aa16.15■□□□□ 0.18
VIPAS39-206ENST00000553888 NPM2Q86SE8 214 aaKnown RBP16.14■□□□□ 0.17
VIPAS39-206ENST00000553888 PRDM11Q9NQV5 511 aa16.14■□□□□ 0.17
VIPAS39-206ENST00000553888 NHSL1Q5SYE7 1610 aa16.14■□□□□ 0.17
VIPAS39-206ENST00000553888 TEFQ10587 303 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms