RNA–Protein interactions for RNA: ENST00000553846.1

PRKCH-208, Transcript of protein kinase C eta, humanhuman

TSL 4

Gene PRKCH, Length 557 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCH-208ENST00000553846 PELP1Q8IZL8 1130 aaKnown RBP13.13□□□□□ -0.31
PRKCH-208ENST00000553846 KLHL34Q8N239 644 aa13.13□□□□□ -0.31
PRKCH-208ENST00000553846 TFCP2L1Q9NZI6 479 aa13.13□□□□□ -0.31
PRKCH-208ENST00000553846 COL23A1Q86Y22 540 aaPredicted RBP13.12□□□□□ -0.31
PRKCH-208ENST00000553846 EDC4Q6P2E9 1401 aaKnown RBP13.12□□□□□ -0.31
PRKCH-208ENST00000553846 PRIM1P49642 420 aaKnown RBP13.11□□□□□ -0.31
PRKCH-208ENST00000553846 L3MBTL2Q969R5 705 aa13.1□□□□□ -0.31
PRKCH-208ENST00000553846 CD2APQ9Y5K6 639 aa13.1□□□□□ -0.31
PRKCH-208ENST00000553846 KIAA1551Q9HCM1 1747 aa13.1□□□□□ -0.31
PRKCH-208ENST00000553846 UBR3Q6ZT12 1888 aa13.1□□□□□ -0.31
PRKCH-208ENST00000553846 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.09□□□□□ -0.31
PRKCH-208ENST00000553846 IP6K1Q92551 441 aa13.09□□□□□ -0.31
PRKCH-208ENST00000553846 A0A1W2PP64 1363 aa13.08□□□□□ -0.31
PRKCH-208ENST00000553846 KIF3CO14782 793 aa13.08□□□□□ -0.32
PRKCH-208ENST00000553846 AMIGO3Q86WK7 504 aa13.08□□□□□ -0.32
PRKCH-208ENST00000553846 DDX54Q8TDD1 881 aaKnown RBP13.08□□□□□ -0.32
PRKCH-208ENST00000553846 GPBP1L1Q9HC44 474 aaPredicted RBP13.08□□□□□ -0.32
PRKCH-208ENST00000553846 CCNL1Q9UK58 526 aaPredicted RBP13.08□□□□□ -0.32
PRKCH-208ENST00000553846 C4BP0C0L5 1744 aa13.08□□□□□ -0.32
PRKCH-208ENST00000553846 ROCK2O75116 1388 aaKnown RBP13.07□□□□□ -0.32
PRKCH-208ENST00000553846 MAP2P11137 1827 aaKnown RBP13.07□□□□□ -0.32
PRKCH-208ENST00000553846 MSL1Q68DK7 614 aa13.07□□□□□ -0.32
PRKCH-208ENST00000553846 KIF13BQ9NQT8 1826 aa13.06□□□□□ -0.32
PRKCH-208ENST00000553846 DNAJC5GQ8N7S2 189 aa13.05□□□□□ -0.32
PRKCH-208ENST00000553846 MAP3K19Q56UN5 1328 aa13.05□□□□□ -0.32
PRKCH-208ENST00000553846 SYTL4Q96C24 671 aaPredicted RBP13.04□□□□□ -0.32
PRKCH-208ENST00000553846 USP47Q96K76 1375 aa13.04□□□□□ -0.32
PRKCH-208ENST00000553846 ITGB4P16144 1822 aa13.04□□□□□ -0.32
PRKCH-208ENST00000553846 PKD1L3Q7Z443 1732 aa13.03□□□□□ -0.32
PRKCH-208ENST00000553846 HOXC9P31274 260 aa13.03□□□□□ -0.32
PRKCH-208ENST00000553846 ZCRB1Q8TBF4 217 aaKnown RBP13.03□□□□□ -0.32
PRKCH-208ENST00000553846 SLC12A5Q9H2X9 1139 aa13.03□□□□□ -0.32
PRKCH-208ENST00000553846 ZNF526Q8TF50 670 aaPredicted RBP13.02□□□□□ -0.33
PRKCH-208ENST00000553846 IGSF1Q8N6C5 1336 aa13.02□□□□□ -0.33
PRKCH-208ENST00000553846 RTL1A6NKG5 1358 aa13.02□□□□□ -0.33
PRKCH-208ENST00000553846 PALLDQ8WX93 1383 aa13.02□□□□□ -0.33
PRKCH-208ENST00000553846 WDR90Q96KV7 1748 aa13.02□□□□□ -0.33
PRKCH-208ENST00000553846 NCAPD2Q15021 1401 aa13.01□□□□□ -0.33
PRKCH-208ENST00000553846 BRCA1P38398 1863 aaKnown RBP13.01□□□□□ -0.33
PRKCH-208ENST00000553846 PXDNLA1KZ92 1463 aa13□□□□□ -0.33
PRKCH-208ENST00000553846 CGNL1Q0VF96 1302 aa13□□□□□ -0.33
PRKCH-208ENST00000553846 LTV1Q96GA3 475 aaPredicted RBP13□□□□□ -0.33
PRKCH-208ENST00000553846 FBLN1P23142 703 aa12.99□□□□□ -0.33
PRKCH-208ENST00000553846 NBPF6Q5VWK0 638 aa12.99□□□□□ -0.33
PRKCH-208ENST00000553846 HDGFL2Q7Z4V5 671 aaPredicted RBP12.99□□□□□ -0.33
PRKCH-208ENST00000553846 FLAD1Q8NFF5 587 aa12.99□□□□□ -0.33
PRKCH-208ENST00000553846 NBPF4Q96M43 638 aa12.99□□□□□ -0.33
PRKCH-208ENST00000553846 PUS7Q96PZ0 661 aaKnown RBP12.99□□□□□ -0.33
PRKCH-208ENST00000553846 MSH5O43196 834 aa12.98□□□□□ -0.33
PRKCH-208ENST00000553846 APLP1P51693 650 aa12.98□□□□□ -0.33
PRKCH-208ENST00000553846 SMIM5Q71RC9 77 aa12.97□□□□□ -0.33
PRKCH-208ENST00000553846 N4BP2Q86UW6 1770 aaPredicted RBP12.97□□□□□ -0.33
PRKCH-208ENST00000553846 CYP27B1O15528 508 aa12.96□□□□□ -0.33
PRKCH-208ENST00000553846 SIN3AQ96ST3 1273 aa12.96□□□□□ -0.33
PRKCH-208ENST00000553846 TERF2IPQ9NYB0 399 aa12.96□□□□□ -0.33
PRKCH-208ENST00000553846 C10orf71Q711Q0 1435 aa12.96□□□□□ -0.34
PRKCH-208ENST00000553846 NSD3Q9BZ95 1437 aa12.96□□□□□ -0.34
PRKCH-208ENST00000553846 PCDH11XQ9BZA7 1347 aa12.95□□□□□ -0.34
PRKCH-208ENST00000553846 PCDH11YQ9BZA8 1340 aa12.95□□□□□ -0.34
PRKCH-208ENST00000553846 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.95□□□□□ -0.34
PRKCH-208ENST00000553846 USHBP1Q8N6Y0 703 aa12.95□□□□□ -0.34
PRKCH-208ENST00000553846 TMC1Q8TDI8 760 aa12.95□□□□□ -0.34
PRKCH-208ENST00000553846 ANKRD26Q9UPS8 1709 aa12.95□□□□□ -0.34
PRKCH-208ENST00000553846 TOMM70O94826 608 aa12.94□□□□□ -0.34
PRKCH-208ENST00000553846 SSFA2P28290 1259 aa12.94□□□□□ -0.34
PRKCH-208ENST00000553846 JMYQ8N9B5 988 aa12.94□□□□□ -0.34
PRKCH-208ENST00000553846 LINC00116Q8NCU8 138 aa12.94□□□□□ -0.34
PRKCH-208ENST00000553846 TESK2Q96S53 571 aa12.94□□□□□ -0.34
PRKCH-208ENST00000553846 WWC3Q9ULE0 1092 aa12.94□□□□□ -0.34
PRKCH-208ENST00000553846 ARFGEF1Q9Y6D6 1849 aa12.94□□□□□ -0.34
PRKCH-208ENST00000553846 INSRP06213 1382 aa12.94□□□□□ -0.34
PRKCH-208ENST00000553846 ZNF831Q5JPB2 1677 aa12.93□□□□□ -0.34
PRKCH-208ENST00000553846 COL5A3P25940 1745 aaPredicted RBP12.92□□□□□ -0.34
PRKCH-208ENST00000553846 AMPHP49418 695 aa12.92□□□□□ -0.34
PRKCH-208ENST00000553846 RRS1Q15050 365 aaKnown RBP12.92□□□□□ -0.34
PRKCH-208ENST00000553846 NKX1-1Q15270 411 aaPredicted RBP12.92□□□□□ -0.34
PRKCH-208ENST00000553846 COL13A1Q5TAT6 717 aaPredicted RBP12.92□□□□□ -0.34
PRKCH-208ENST00000553846 PIGBQ92521 554 aa12.92□□□□□ -0.34
PRKCH-208ENST00000553846 COG3Q96JB2 828 aa12.92□□□□□ -0.34
PRKCH-208ENST00000553846 AK7Q96M32 723 aa12.92□□□□□ -0.34
PRKCH-208ENST00000553846 NMRK2Q9NPI5 230 aa12.92□□□□□ -0.34
PRKCH-208ENST00000553846 KDRP35968 1356 aa12.92□□□□□ -0.34
PRKCH-208ENST00000553846 C4AP0C0L4 1744 aa12.91□□□□□ -0.34
PRKCH-208ENST00000553846 KIF20BQ96Q89 1820 aa12.91□□□□□ -0.34
PRKCH-208ENST00000553846 ITPK1Q13572 414 aa12.91□□□□□ -0.34
PRKCH-208ENST00000553846 MPRIPQ6WCQ1 1025 aa12.91□□□□□ -0.34
PRKCH-208ENST00000553846 KIF24Q5T7B8 1368 aa12.91□□□□□ -0.34
PRKCH-208ENST00000553846 SMG6Q86US8 1419 aaKnown RBP12.9□□□□□ -0.34
PRKCH-208ENST00000553846 PHF14O94880 888 aa12.9□□□□□ -0.34
PRKCH-208ENST00000553846 HMGB2P26583 209 aaKnown RBP12.9□□□□□ -0.34
PRKCH-208ENST00000553846 RAPGEF4Q8WZA2 1011 aa12.9□□□□□ -0.34
PRKCH-208ENST00000553846 SMARCC1Q92922 1105 aaPredicted RBP12.9□□□□□ -0.34
PRKCH-208ENST00000553846 CARD11Q9BXL7 1154 aa12.9□□□□□ -0.34
PRKCH-208ENST00000553846 LOC102724428A0A0B4J2F2 783 aa12.89□□□□□ -0.35
PRKCH-208ENST00000553846 FYB1O15117 783 aa12.89□□□□□ -0.35
PRKCH-208ENST00000553846 TATP17735 454 aaPredicted RBP12.89□□□□□ -0.35
PRKCH-208ENST00000553846 SIK1P57059 783 aa12.89□□□□□ -0.35
PRKCH-208ENST00000553846 HSP90AB2PQ58FF8 381 aa12.89□□□□□ -0.35
PRKCH-208ENST00000553846 RBM46Q8TBY0 533 aaKnown RBP12.89□□□□□ -0.35
PRKCH-208ENST00000553846 KLRG1Q96E93 195 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms