RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 CLSPNQ9HAW4 1339 aa7.31□□□□□ -1.24
VTI1B-202ENST00000553619 ZNF518AQ6AHZ1 1483 aa7.31□□□□□ -1.24
VTI1B-202ENST00000553619 CCNYL3P0C7X3 344 aa7.31□□□□□ -1.24
VTI1B-202ENST00000553619 MS4A1P11836 297 aa7.31□□□□□ -1.24
VTI1B-202ENST00000553619 NAIPQ13075 1403 aa7.31□□□□□ -1.24
VTI1B-202ENST00000553619 MAST1Q9Y2H9 1570 aa7.31□□□□□ -1.24
VTI1B-202ENST00000553619 KIF13AQ9H1H9 1805 aa7.31□□□□□ -1.24
VTI1B-202ENST00000553619 CROCC2H7BZ55 1655 aa7.31□□□□□ -1.24
VTI1B-202ENST00000553619 TRAPPC8Q9Y2L5 1435 aa7.3□□□□□ -1.24
VTI1B-202ENST00000553619 ARHGEF12Q9NZN5 1544 aa7.3□□□□□ -1.24
VTI1B-202ENST00000553619 ANKRD50Q9ULJ7 1429 aa7.29□□□□□ -1.24
VTI1B-202ENST00000553619 ALDH1A1P00352 501 aa7.29□□□□□ -1.24
VTI1B-202ENST00000553619 SNRPBP14678 240 aaKnown RBP7.29□□□□□ -1.24
VTI1B-202ENST00000553619 PARP9Q8IXQ6 854 aa7.29□□□□□ -1.24
VTI1B-202ENST00000553619 PRR7Q8TB68 274 aa7.29□□□□□ -1.24
VTI1B-202ENST00000553619 BEGAINQ9BUH8 593 aa7.29□□□□□ -1.24
VTI1B-202ENST00000553619 KIF15Q9NS87 1388 aa7.29□□□□□ -1.24
VTI1B-202ENST00000553619 GCC2Q8IWJ2 1684 aa7.28□□□□□ -1.24
VTI1B-202ENST00000553619 DUOX2Q9NRD8 1548 aa7.28□□□□□ -1.24
VTI1B-202ENST00000553619 SIAH2O43255 324 aa7.28□□□□□ -1.24
VTI1B-202ENST00000553619 RAPGEF3O95398 923 aa7.28□□□□□ -1.24
VTI1B-202ENST00000553619 SH3BP2P78314 561 aa7.28□□□□□ -1.24
VTI1B-202ENST00000553619 PTPRNQ16849 979 aa7.28□□□□□ -1.24
VTI1B-202ENST00000553619 EHBP1Q8NDI1 1231 aa7.28□□□□□ -1.24
VTI1B-202ENST00000553619 MLH3Q9UHC1 1453 aa7.28□□□□□ -1.24
VTI1B-202ENST00000553619 POGZQ7Z3K3 1410 aa7.27□□□□□ -1.24
VTI1B-202ENST00000553619 MTMR2Q13614 643 aa7.27□□□□□ -1.25
VTI1B-202ENST00000553619 LINC01559Q495D7 138 aa7.27□□□□□ -1.25
VTI1B-202ENST00000553619 TBC1D2Q9BYX2 928 aa7.27□□□□□ -1.25
VTI1B-202ENST00000553619 UNC93B1Q9H1C4 597 aa7.27□□□□□ -1.25
VTI1B-202ENST00000553619 DHX29Q7Z478 1369 aaKnown RBP7.27□□□□□ -1.25
VTI1B-202ENST00000553619 MAGI2Q86UL8 1455 aa7.27□□□□□ -1.25
VTI1B-202ENST00000553619 ATP7AQ04656 1500 aa7.27□□□□□ -1.25
VTI1B-202ENST00000553619 PLXNC1O60486 1568 aa7.26□□□□□ -1.25
VTI1B-202ENST00000553619 KANK1Q14678 1352 aa7.26□□□□□ -1.25
VTI1B-202ENST00000553619 WFS1O76024 890 aa7.26□□□□□ -1.25
VTI1B-202ENST00000553619 DIXDC1Q155Q3 683 aa7.26□□□□□ -1.25
VTI1B-202ENST00000553619 TRIM47Q96LD4 638 aa7.26□□□□□ -1.25
VTI1B-202ENST00000553619 AK7Q96M32 723 aa7.26□□□□□ -1.25
VTI1B-202ENST00000553619 MPHOSPH9Q99550 1183 aa7.26□□□□□ -1.25
VTI1B-202ENST00000553619 ERBINQ96RT1 1412 aa7.26□□□□□ -1.25
VTI1B-202ENST00000553619 PPRC1Q5VV67 1664 aaKnown RBP7.25□□□□□ -1.25
VTI1B-202ENST00000553619 NUP155O75694 1391 aa7.25□□□□□ -1.25
VTI1B-202ENST00000553619 DHX57Q6P158 1386 aaKnown RBP7.25□□□□□ -1.25
VTI1B-202ENST00000553619 TRIM66O15016 1216 aa7.25□□□□□ -1.25
VTI1B-202ENST00000553619 KIF3BO15066 747 aa7.25□□□□□ -1.25
VTI1B-202ENST00000553619 SLC24A1O60721 1099 aa7.25□□□□□ -1.25
VTI1B-202ENST00000553619 NFX1Q12986 1120 aaKnown RBP7.25□□□□□ -1.25
VTI1B-202ENST00000553619 RSBN1LQ6PCB5 846 aaPredicted RBP7.25□□□□□ -1.25
VTI1B-202ENST00000553619 BAP1Q92560 729 aa7.25□□□□□ -1.25
VTI1B-202ENST00000553619 BCANQ96GW7 911 aa7.25□□□□□ -1.25
VTI1B-202ENST00000553619 EVA1BQ9NVM1 165 aa7.25□□□□□ -1.25
VTI1B-202ENST00000553619 KDM5CP41229 1560 aa7.25□□□□□ -1.25
VTI1B-202ENST00000553619 KCNH2Q12809 1159 aa7.24□□□□□ -1.25
VTI1B-202ENST00000553619 LCE2CQ5TA81 110 aa7.24□□□□□ -1.25
VTI1B-202ENST00000553619 SENP2Q9HC62 589 aa7.24□□□□□ -1.25
VTI1B-202ENST00000553619 TIMELESSQ9UNS1 1208 aa7.24□□□□□ -1.25
VTI1B-202ENST00000553619 PCDHB15Q9Y5E8 787 aa7.24□□□□□ -1.25
VTI1B-202ENST00000553619 TLL2Q9Y6L7 1015 aa7.24□□□□□ -1.25
VTI1B-202ENST00000553619 HECW2Q9P2P5 1572 aa7.24□□□□□ -1.25
VTI1B-202ENST00000553619 RICTORQ6R327 1708 aa7.24□□□□□ -1.25
VTI1B-202ENST00000553619 A2MP01023 1474 aa7.24□□□□□ -1.25
VTI1B-202ENST00000553619 KIDINS220Q9ULH0 1771 aa7.23□□□□□ -1.25
VTI1B-202ENST00000553619 SPDYE5A6NIY4 337 aa7.23□□□□□ -1.25
VTI1B-202ENST00000553619 CFAP99D6REC4 459 aa7.23□□□□□ -1.25
VTI1B-202ENST00000553619 BMP1P13497 986 aa7.23□□□□□ -1.25
VTI1B-202ENST00000553619 DESI1Q6ICB0 168 aa7.23□□□□□ -1.25
VTI1B-202ENST00000553619 ZNF511Q8NB15 262 aa7.23□□□□□ -1.25
VTI1B-202ENST00000553619 WASF2Q9Y6W5 498 aa7.23□□□□□ -1.25
VTI1B-202ENST00000553619 INO80Q9ULG1 1556 aaPredicted RBP7.23□□□□□ -1.25
VTI1B-202ENST00000553619 ATP10AO60312 1499 aa7.23□□□□□ -1.25
VTI1B-202ENST00000553619 ZFYVE16Q7Z3T8 1539 aa7.22□□□□□ -1.25
VTI1B-202ENST00000553619 SPTLC1O15269 473 aa7.22□□□□□ -1.25
VTI1B-202ENST00000553619 GJA5P36382 358 aa7.22□□□□□ -1.25
VTI1B-202ENST00000553619 ZMYM4Q5VZL5 1548 aa7.22□□□□□ -1.25
VTI1B-202ENST00000553619 EIF2AK4Q9P2K8 1649 aaKnown RBP7.21□□□□□ -1.26
VTI1B-202ENST00000553619 GGT6Q6P531 493 aa7.21□□□□□ -1.26
VTI1B-202ENST00000553619 TRIM46Q7Z4K8 759 aa7.21□□□□□ -1.26
VTI1B-202ENST00000553619 CABLES1Q8TDN4 633 aa7.21□□□□□ -1.26
VTI1B-202ENST00000553619 KIFC2Q96AC6 838 aa7.21□□□□□ -1.26
VTI1B-202ENST00000553619 ESF1Q9H501 851 aaKnown RBP7.21□□□□□ -1.26
VTI1B-202ENST00000553619 CAPN5O15484 640 aaPredicted RBP7.2□□□□□ -1.26
VTI1B-202ENST00000553619 LYPD8Q6UX82 237 aa7.2□□□□□ -1.26
VTI1B-202ENST00000553619 ZBTB3Q9H5J0 574 aa7.2□□□□□ -1.26
VTI1B-202ENST00000553619 MAP10Q9P2G4 905 aa7.2□□□□□ -1.26
VTI1B-202ENST00000553619 WASHC2CQ9Y4E1 1318 aa7.2□□□□□ -1.26
VTI1B-202ENST00000553619 KDM6BO15054 1643 aa7.19□□□□□ -1.26
VTI1B-202ENST00000553619 KDM5DQ9BY66 1539 aa7.19□□□□□ -1.26
VTI1B-202ENST00000553619 TERTO14746 1132 aaKnown RBP7.19□□□□□ -1.26
VTI1B-202ENST00000553619 CTHP32929 405 aa7.19□□□□□ -1.26
VTI1B-202ENST00000553619 NEUROD1Q13562 356 aa7.19□□□□□ -1.26
VTI1B-202ENST00000553619 CSPP1Q1MSJ5 1256 aa7.19□□□□□ -1.26
VTI1B-202ENST00000553619 RIC3Q7Z5B4 369 aa7.19□□□□□ -1.26
VTI1B-202ENST00000553619 ARID4BQ4LE39 1312 aaPredicted RBP7.19□□□□□ -1.26
VTI1B-202ENST00000553619 COL17A1Q9UMD9 1497 aaPredicted RBP7.18□□□□□ -1.26
VTI1B-202ENST00000553619 UNC13BO14795 1591 aa7.18□□□□□ -1.26
VTI1B-202ENST00000553619 DIP2CQ9Y2E4 1556 aa7.18□□□□□ -1.26
VTI1B-202ENST00000553619 F12P00748 615 aaPredicted RBP7.18□□□□□ -1.26
VTI1B-202ENST00000553619 VARSP26640 1264 aaKnown RBP7.18□□□□□ -1.26
VTI1B-202ENST00000553619 YEATS2Q9ULM3 1422 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms