RNA–Protein interactions for RNA: ENST00000553605.1

PRPF39-204, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-204ENST00000553605 USP31Q70CQ4 1352 aa19.92■□□□□ 0.78
PRPF39-204ENST00000553605 NSD2O96028 1365 aa19.9■□□□□ 0.78
PRPF39-204ENST00000553605 NME9Q86XW9 330 aa19.88■□□□□ 0.77
PRPF39-204ENST00000553605 FLAD1Q8NFF5 587 aa19.88■□□□□ 0.77
PRPF39-204ENST00000553605 WWC3Q9ULE0 1092 aa19.88■□□□□ 0.77
PRPF39-204ENST00000553605 LTN1O94822 1766 aa19.88■□□□□ 0.77
PRPF39-204ENST00000553605 USP47Q96K76 1375 aa19.87■□□□□ 0.77
PRPF39-204ENST00000553605 IGSF1Q8N6C5 1336 aa19.87■□□□□ 0.77
PRPF39-204ENST00000553605 TOMM70O94826 608 aa19.86■□□□□ 0.77
PRPF39-204ENST00000553605 LTV1Q96GA3 475 aaPredicted RBP19.86■□□□□ 0.77
PRPF39-204ENST00000553605 DOT1LQ8TEK3 1739 aa19.85■□□□□ 0.77
PRPF39-204ENST00000553605 COL13A1Q5TAT6 717 aaPredicted RBP19.85■□□□□ 0.77
PRPF39-204ENST00000553605 CAPN15O75808 1086 aa19.84■□□□□ 0.77
PRPF39-204ENST00000553605 HMGB2P26583 209 aaKnown RBP19.84■□□□□ 0.77
PRPF39-204ENST00000553605 ZCRB1Q8TBF4 217 aaKnown RBP19.84■□□□□ 0.77
PRPF39-204ENST00000553605 IP6K1Q92551 441 aa19.84■□□□□ 0.77
PRPF39-204ENST00000553605 MON2Q7Z3U7 1717 aa19.82■□□□□ 0.76
PRPF39-204ENST00000553605 USP54Q70EL1 1684 aa19.82■□□□□ 0.76
PRPF39-204ENST00000553605 SBNO2Q9Y2G9 1366 aa19.81■□□□□ 0.76
PRPF39-204ENST00000553605 C5P01031 1676 aa19.78■□□□□ 0.76
PRPF39-204ENST00000553605 TNS4Q8IZW8 715 aa19.77■□□□□ 0.76
PRPF39-204ENST00000553605 KLRG1Q96E93 195 aa19.77■□□□□ 0.76
PRPF39-204ENST00000553605 FAM208AQ9UK61 1670 aaKnown RBP19.77■□□□□ 0.76
PRPF39-204ENST00000553605 CD163L1Q9NR16 1453 aa19.76■□□□□ 0.75
PRPF39-204ENST00000553605 PRELPP51888 382 aa19.76■□□□□ 0.75
PRPF39-204ENST00000553605 HDGFL2Q7Z4V5 671 aaPredicted RBP19.76■□□□□ 0.75
PRPF39-204ENST00000553605 JMYQ8N9B5 988 aa19.76■□□□□ 0.75
PRPF39-204ENST00000553605 TMC1Q8TDI8 760 aa19.76■□□□□ 0.75
PRPF39-204ENST00000553605 AMIGO3Q86WK7 504 aa19.75■□□□□ 0.75
PRPF39-204ENST00000553605 AK7Q96M32 723 aa19.75■□□□□ 0.75
PRPF39-204ENST00000553605 NMRK2Q9NPI5 230 aa19.75■□□□□ 0.75
PRPF39-204ENST00000553605 PALLDQ8WX93 1383 aa19.74■□□□□ 0.75
PRPF39-204ENST00000553605 PHF14O94880 888 aa19.74■□□□□ 0.75
PRPF39-204ENST00000553605 HTRA3P83110 453 aa19.74■□□□□ 0.75
PRPF39-204ENST00000553605 MEGF6O75095 1541 aa19.74■□□□□ 0.75
PRPF39-204ENST00000553605 SMIM5Q71RC9 77 aa19.73■□□□□ 0.75
PRPF39-204ENST00000553605 RBM46Q8TBY0 533 aaKnown RBP19.73■□□□□ 0.75
PRPF39-204ENST00000553605 EDC4Q6P2E9 1401 aaKnown RBP19.73■□□□□ 0.75
PRPF39-204ENST00000553605 WDR90Q96KV7 1748 aa19.73■□□□□ 0.75
PRPF39-204ENST00000553605 CICQ96RK0 1608 aaPredicted RBP19.73■□□□□ 0.75
PRPF39-204ENST00000553605 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.72■□□□□ 0.75
PRPF39-204ENST00000553605 HOXC9P31274 260 aa19.72■□□□□ 0.75
PRPF39-204ENST00000553605 L3MBTL2Q969R5 705 aa19.72■□□□□ 0.75
PRPF39-204ENST00000553605 SLC12A5Q9H2X9 1139 aa19.72■□□□□ 0.75
PRPF39-204ENST00000553605 TAF1LQ8IZX4 1826 aa19.72■□□□□ 0.75
PRPF39-204ENST00000553605 ROCK2O75116 1388 aaKnown RBP19.71■□□□□ 0.75
PRPF39-204ENST00000553605 AMPHP49418 695 aa19.71■□□□□ 0.75
PRPF39-204ENST00000553605 MPRIPQ6WCQ1 1025 aa19.71■□□□□ 0.75
PRPF39-204ENST00000553605 CGNL1Q0VF96 1302 aa19.71■□□□□ 0.75
PRPF39-204ENST00000553605 MAP3K19Q56UN5 1328 aa19.71■□□□□ 0.75
PRPF39-204ENST00000553605 C16orf71Q8IYS4 520 aaPredicted RBP19.7■□□□□ 0.74
PRPF39-204ENST00000553605 TERF2IPQ9NYB0 399 aa19.7■□□□□ 0.74
PRPF39-204ENST00000553605 C4BP0C0L5 1744 aa19.7■□□□□ 0.74
PRPF39-204ENST00000553605 ARHGAP27Q6ZUM4 889 aa19.69■□□□□ 0.74
PRPF39-204ENST00000553605 BCS1LQ9Y276 419 aa19.69■□□□□ 0.74
PRPF39-204ENST00000553605 NSD3Q9BZ95 1437 aa19.68■□□□□ 0.74
PRPF39-204ENST00000553605 SSFA2P28290 1259 aa19.68■□□□□ 0.74
PRPF39-204ENST00000553605 FSTL1Q12841 308 aa19.68■□□□□ 0.74
PRPF39-204ENST00000553605 NBPF6Q5VWK0 638 aa19.68■□□□□ 0.74
PRPF39-204ENST00000553605 RAPGEF4Q8WZA2 1011 aa19.68■□□□□ 0.74
PRPF39-204ENST00000553605 SMARCC1Q92922 1105 aaPredicted RBP19.68■□□□□ 0.74
PRPF39-204ENST00000553605 NBPF4Q96M43 638 aa19.68■□□□□ 0.74
PRPF39-204ENST00000553605 RGPD2P0DJD1 1756 aa19.67■□□□□ 0.74
PRPF39-204ENST00000553605 FBLN1P23142 703 aa19.67■□□□□ 0.74
PRPF39-204ENST00000553605 PCNTO95613 3336 aa19.66■□□□□ 0.74
PRPF39-204ENST00000553605 TOGARAM1Q9Y4F4 1720 aa19.66■□□□□ 0.74
PRPF39-204ENST00000553605 TATP17735 454 aaPredicted RBP19.66■□□□□ 0.74
PRPF39-204ENST00000553605 TGFB2P61812 414 aa19.66■□□□□ 0.74
PRPF39-204ENST00000553605 USHBP1Q8N6Y0 703 aa19.66■□□□□ 0.74
PRPF39-204ENST00000553605 COG3Q96JB2 828 aa19.66■□□□□ 0.74
PRPF39-204ENST00000553605 A0A1W2PP64 1363 aa19.66■□□□□ 0.74
PRPF39-204ENST00000553605 UBR3Q6ZT12 1888 aa19.65■□□□□ 0.74
PRPF39-204ENST00000553605 A0A0G2JLW4 131 aa19.65■□□□□ 0.74
PRPF39-204ENST00000553605 PCDH11XQ9BZA7 1347 aa19.65■□□□□ 0.74
PRPF39-204ENST00000553605 PCDH11YQ9BZA8 1340 aa19.65■□□□□ 0.74
PRPF39-204ENST00000553605 PXDNLA1KZ92 1463 aa19.65■□□□□ 0.74
PRPF39-204ENST00000553605 MMP10P09238 476 aa19.64■□□□□ 0.73
PRPF39-204ENST00000553605 C9orf131Q5VYM1 1079 aa19.62■□□□□ 0.73
PRPF39-204ENST00000553605 LINC00116Q8NCU8 138 aa19.62■□□□□ 0.73
PRPF39-204ENST00000553605 FCHSD2O94868 740 aa19.61■□□□□ 0.73
PRPF39-204ENST00000553605 PIGBQ92521 554 aa19.61■□□□□ 0.73
PRPF39-204ENST00000553605 LOC102724428A0A0B4J2F2 783 aa19.6■□□□□ 0.73
PRPF39-204ENST00000553605 GNPATO15228 680 aa19.6■□□□□ 0.73
PRPF39-204ENST00000553605 CYP27B1O15528 508 aa19.6■□□□□ 0.73
PRPF39-204ENST00000553605 SIK1P57059 783 aa19.6■□□□□ 0.73
PRPF39-204ENST00000553605 N4BP2Q86UW6 1770 aaPredicted RBP19.6■□□□□ 0.73
PRPF39-204ENST00000553605 PLEKHG2Q9H7P9 1386 aa19.59■□□□□ 0.73
PRPF39-204ENST00000553605 KDM2BQ8NHM5 1336 aa19.59■□□□□ 0.73
PRPF39-204ENST00000553605 DPEP1P16444 411 aa19.59■□□□□ 0.73
PRPF39-204ENST00000553605 RTL1A6NKG5 1358 aa19.58■□□□□ 0.73
PRPF39-204ENST00000553605 KIF13BQ9NQT8 1826 aa19.58■□□□□ 0.73
PRPF39-204ENST00000553605 RRS1Q15050 365 aaKnown RBP19.58■□□□□ 0.72
PRPF39-204ENST00000553605 RRAGCQ9HB90 399 aa19.58■□□□□ 0.72
PRPF39-204ENST00000553605 KIAA1551Q9HCM1 1747 aa19.58■□□□□ 0.72
PRPF39-204ENST00000553605 NLGN1Q8N2Q7 840 aa19.57■□□□□ 0.72
PRPF39-204ENST00000553605 SMG6Q86US8 1419 aaKnown RBP19.57■□□□□ 0.72
PRPF39-204ENST00000553605 ITGB4P16144 1822 aa19.56■□□□□ 0.72
PRPF39-204ENST00000553605 HSPA1AP0DMV8 641 aaKnown RBP19.56■□□□□ 0.72
PRPF39-204ENST00000553605 HSPA1BP0DMV9 641 aaKnown RBP19.56■□□□□ 0.72
PRPF39-204ENST00000553605 PUS7Q96PZ0 661 aaKnown RBP19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms