RNA–Protein interactions for RNA: ENST00000553569.1

TDP1-206, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 879 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-206ENST00000553569 PPP2R1AP30153 589 aa30.8■■■□□ 2.52
TDP1-206ENST00000553569 DEFB132Q7Z7B7 95 aa30.8■■■□□ 2.52
TDP1-206ENST00000553569 PKD1L3Q7Z443 1732 aa30.8■■■□□ 2.52
TDP1-206ENST00000553569 COL3A1P02461 1466 aaPredicted RBP30.8■■■□□ 2.52
TDP1-206ENST00000553569 BCL9O00512 1426 aa30.79■■■□□ 2.52
TDP1-206ENST00000553569 PARD3Q8TEW0 1356 aa30.79■■■□□ 2.52
TDP1-206ENST00000553569 DIAPH1O60610 1272 aaKnown RBP30.77■■■□□ 2.52
TDP1-206ENST00000553569 BAG6P46379 1132 aa30.77■■■□□ 2.52
TDP1-206ENST00000553569 AEBP1Q8IUX7 1158 aa30.76■■■□□ 2.51
TDP1-206ENST00000553569 ACSBG1Q96GR2 724 aa30.75■■■□□ 2.51
TDP1-206ENST00000553569 NHSQ6T4R5 1651 aa30.74■■■□□ 2.51
TDP1-206ENST00000553569 PCDH11XQ9BZA7 1347 aa30.74■■■□□ 2.51
TDP1-206ENST00000553569 PCDH11YQ9BZA8 1340 aa30.74■■■□□ 2.51
TDP1-206ENST00000553569 KAT6BQ8WYB5 2073 aa30.74■■■□□ 2.51
TDP1-206ENST00000553569 SULT6B1Q6IMI4 303 aa30.74■■■□□ 2.51
TDP1-206ENST00000553569 CFAP53Q96M91 514 aa30.74■■■□□ 2.51
TDP1-206ENST00000553569 DOT1LQ8TEK3 1739 aa30.73■■■□□ 2.51
TDP1-206ENST00000553569 APBA3O96018 575 aa30.73■■■□□ 2.51
TDP1-206ENST00000553569 PTF1AQ7RTS3 328 aa30.72■■■□□ 2.51
TDP1-206ENST00000553569 EN1Q05925 392 aaPredicted RBP30.71■■■□□ 2.51
TDP1-206ENST00000553569 SPG7Q9UQ90 795 aa30.71■■■□□ 2.51
TDP1-206ENST00000553569 BCL11BQ9C0K0 894 aaPredicted RBP30.7■■■□□ 2.51
TDP1-206ENST00000553569 KCNQ2O43526 872 aa30.69■■■□□ 2.5
TDP1-206ENST00000553569 KDRP35968 1356 aa30.68■■■□□ 2.5
TDP1-206ENST00000553569 U2SURPO15042 1029 aaKnown RBP30.68■■■□□ 2.5
TDP1-206ENST00000553569 HMOX1P09601 288 aa30.68■■■□□ 2.5
TDP1-206ENST00000553569 CYP27B1O15528 508 aa30.67■■■□□ 2.5
TDP1-206ENST00000553569 RALBP1Q15311 655 aa30.67■■■□□ 2.5
TDP1-206ENST00000553569 PLEKHG2Q9H7P9 1386 aa30.66■■■□□ 2.5
TDP1-206ENST00000553569 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP30.65■■■□□ 2.5
TDP1-206ENST00000553569 BTAF1O14981 1849 aa30.65■■■□□ 2.5
TDP1-206ENST00000553569 EZH2Q15910 746 aaKnown RBP30.64■■■□□ 2.5
TDP1-206ENST00000553569 SYTL4Q96C24 671 aaPredicted RBP30.63■■■□□ 2.49
TDP1-206ENST00000553569 TOGARAM1Q9Y4F4 1720 aa30.62■■■□□ 2.49
TDP1-206ENST00000553569 PLEKHO1Q53GL0 409 aaPredicted RBP30.62■■■□□ 2.49
TDP1-206ENST00000553569 CAMKK2Q96RR4 588 aa30.61■■■□□ 2.49
TDP1-206ENST00000553569 RGPD3A6NKT7 1758 aaPredicted RBP30.61■■■□□ 2.49
TDP1-206ENST00000553569 RGPD4Q7Z3J3 1758 aa30.61■■■□□ 2.49
TDP1-206ENST00000553569 PRIM1P49642 420 aaKnown RBP30.6■■■□□ 2.49
TDP1-206ENST00000553569 RREB1Q92766 1687 aa30.6■■■□□ 2.49
TDP1-206ENST00000553569 NUDCQ9Y266 331 aa30.6■■■□□ 2.49
TDP1-206ENST00000553569 PHKG2P15735 406 aa30.59■■■□□ 2.49
TDP1-206ENST00000553569 AMOTQ4VCS5 1084 aa30.59■■■□□ 2.49
TDP1-206ENST00000553569 ZNF530Q6P9A1 599 aaPredicted RBP30.59■■■□□ 2.49
TDP1-206ENST00000553569 IFNL2Q8IZJ0 200 aa30.59■■■□□ 2.49
TDP1-206ENST00000553569 MYBBP1AQ9BQG0 1328 aaKnown RBP30.58■■■□□ 2.49
TDP1-206ENST00000553569 NUP188Q5SRE5 1749 aa30.56■■■□□ 2.48
TDP1-206ENST00000553569 ITGB4P16144 1822 aa30.55■■■□□ 2.48
TDP1-206ENST00000553569 PLSCR1O15162 318 aa30.54■■■□□ 2.48
TDP1-206ENST00000553569 U2AF1L5P0DN76 240 aaPredicted RBP30.54■■■□□ 2.48
TDP1-206ENST00000553569 U2AF1Q01081 240 aaKnown RBP eCLIP30.54■■■□□ 2.48
TDP1-206ENST00000553569 NKX1-1Q15270 411 aaPredicted RBP30.54■■■□□ 2.48
TDP1-206ENST00000553569 PRKRIP1Q9H875 184 aaPredicted RBP30.54■■■□□ 2.48
TDP1-206ENST00000553569 C1orf141Q5JVX7 400 aa30.53■■■□□ 2.48
TDP1-206ENST00000553569 PRKAR2BP31323 418 aa30.49■■■□□ 2.47
TDP1-206ENST00000553569 MPRIPQ6WCQ1 1025 aa30.49■■■□□ 2.47
TDP1-206ENST00000553569 RSPH6AQ9H0K4 717 aa30.49■■■□□ 2.47
TDP1-206ENST00000553569 HSP90AB1P08238 724 aaKnown RBP30.48■■■□□ 2.47
TDP1-206ENST00000553569 KDM6AO15550 1401 aaPredicted RBP30.47■■■□□ 2.47
TDP1-206ENST00000553569 MTHFSDQ2M296 383 aaKnown RBP30.47■■■□□ 2.47
TDP1-206ENST00000553569 TXNRD1Q16881 649 aa30.46■■■□□ 2.47
TDP1-206ENST00000553569 DCAF5Q96JK2 942 aa30.46■■■□□ 2.47
TDP1-206ENST00000553569 AKAP4Q5JQC9 854 aa30.44■■■□□ 2.46
TDP1-206ENST00000553569 PROM2Q8N271 834 aa30.44■■■□□ 2.46
TDP1-206ENST00000553569 TMOD3Q9NYL9 352 aa30.44■■■□□ 2.46
TDP1-206ENST00000553569 SCN11AQ9UI33 1791 aa30.43■■■□□ 2.46
TDP1-206ENST00000553569 VIRMAQ69YN4 1812 aaKnown RBP30.43■■■□□ 2.46
TDP1-206ENST00000553569 LY75O60449 1722 aa30.43■■■□□ 2.46
TDP1-206ENST00000553569 PIGBQ92521 554 aa30.42■■■□□ 2.46
TDP1-206ENST00000553569 FCHSD2O94868 740 aa30.41■■■□□ 2.46
TDP1-206ENST00000553569 PHACTR3Q96KR7 559 aa30.41■■■□□ 2.46
TDP1-206ENST00000553569 GAS2L2Q8NHY3 880 aa30.4■■■□□ 2.46
TDP1-206ENST00000553569 PSDA5PKW4 1024 aaPredicted RBP30.39■■■□□ 2.46
TDP1-206ENST00000553569 ERVV-2B6SEH9 535 aa30.39■■■□□ 2.46
TDP1-206ENST00000553569 NBPF14Q5TI25 921 aa30.38■■■□□ 2.45
TDP1-206ENST00000553569 PALLDQ8WX93 1383 aa30.38■■■□□ 2.45
TDP1-206ENST00000553569 ANP32CO43423 234 aa30.37■■■□□ 2.45
TDP1-206ENST00000553569 CABP4P57796 275 aa30.37■■■□□ 2.45
TDP1-206ENST00000553569 MAP3K5Q99683 1374 aa30.37■■■□□ 2.45
TDP1-206ENST00000553569 R3HDM1Q15032 1099 aaKnown RBP30.36■■■□□ 2.45
TDP1-206ENST00000553569 ANO8Q9HCE9 1232 aaPredicted RBP30.36■■■□□ 2.45
TDP1-206ENST00000553569 KCNQ4P56696 695 aa30.35■■■□□ 2.45
TDP1-206ENST00000553569 LGR6Q9HBX8 967 aa30.35■■■□□ 2.45
TDP1-206ENST00000553569 ADAMTS7Q9UKP4 1686 aa30.34■■■□□ 2.45
TDP1-206ENST00000553569 PAPPAQ13219 1627 aa30.34■■■□□ 2.45
TDP1-206ENST00000553569 RNMTO43148 476 aaKnown RBP30.34■■■□□ 2.45
TDP1-206ENST00000553569 SMARCC1Q92922 1105 aaPredicted RBP30.34■■■□□ 2.45
TDP1-206ENST00000553569 LRRC4BQ9NT99 713 aa30.34■■■□□ 2.45
TDP1-206ENST00000553569 SLC27A3Q5K4L6 730 aa30.33■■■□□ 2.45
TDP1-206ENST00000553569 CCNL1Q9UK58 526 aaPredicted RBP30.33■■■□□ 2.45
TDP1-206ENST00000553569 ASAP1Q9ULH1 1129 aa30.33■■■□□ 2.45
TDP1-206ENST00000553569 NEFMP07197 916 aa30.32■■■□□ 2.44
TDP1-206ENST00000553569 MRC1P22897 1456 aa30.31■■■□□ 2.44
TDP1-206ENST00000553569 GNAT3A8MTJ3 354 aa30.31■■■□□ 2.44
TDP1-206ENST00000553569 WDR43Q15061 677 aaKnown RBP eCLIP30.31■■■□□ 2.44
TDP1-206ENST00000553569 NFATC2IPQ8NCF5 419 aa30.3■■■□□ 2.44
TDP1-206ENST00000553569 PLEKHF1Q96S99 279 aa30.29■■■□□ 2.44
TDP1-206ENST00000553569 ATG3Q9NT62 314 aa30.29■■■□□ 2.44
TDP1-206ENST00000553569 STK32BQ9NY57 414 aa30.29■■■□□ 2.44
TDP1-206ENST00000553569 MAPK8IP3Q9UPT6 1336 aa30.28■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 98.1 ms