RNA–Protein interactions for RNA: ENST00000553527.1

TDP1-205, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 910 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-205ENST00000553527 AMER1Q5JTC6 1135 aaPredicted RBP32.2■■■□□ 2.75
TDP1-205ENST00000553527 CC2D1BQ5T0F9 858 aaKnown RBP32.18■■■□□ 2.74
TDP1-205ENST00000553527 PARD3Q8TEW0 1356 aa32.18■■■□□ 2.74
TDP1-205ENST00000553527 PER1O15534 1290 aaPredicted RBP32.17■■■□□ 2.74
TDP1-205ENST00000553527 R3HDM1Q15032 1099 aaKnown RBP32.16■■■□□ 2.74
TDP1-205ENST00000553527 EYA1Q99502 592 aa32.16■■■□□ 2.74
TDP1-205ENST00000553527 SHANK3Q9BYB0 1731 aa32.15■■■□□ 2.74
TDP1-205ENST00000553527 PLSCR1O15162 318 aa32.15■■■□□ 2.74
TDP1-205ENST00000553527 EIF4A2Q14240 407 aaKnown RBP32.15■■■□□ 2.74
TDP1-205ENST00000553527 RREB1Q92766 1687 aa32.15■■■□□ 2.74
TDP1-205ENST00000553527 NHSQ6T4R5 1651 aa32.13■■■□□ 2.73
TDP1-205ENST00000553527 NUP188Q5SRE5 1749 aa32.12■■■□□ 2.73
TDP1-205ENST00000553527 SYTL4Q96C24 671 aaPredicted RBP32.12■■■□□ 2.73
TDP1-205ENST00000553527 NBPF14Q5TI25 921 aa32.1■■■□□ 2.73
TDP1-205ENST00000553527 BTAF1O14981 1849 aa32.09■■■□□ 2.73
TDP1-205ENST00000553527 PRIM1P49642 420 aaKnown RBP32.07■■■□□ 2.72
TDP1-205ENST00000553527 PROM2Q8N271 834 aa32.07■■■□□ 2.72
TDP1-205ENST00000553527 RGPD3A6NKT7 1758 aaPredicted RBP32.07■■■□□ 2.72
TDP1-205ENST00000553527 RGPD4Q7Z3J3 1758 aa32.07■■■□□ 2.72
TDP1-205ENST00000553527 DOT1LQ8TEK3 1739 aa32.06■■■□□ 2.72
TDP1-205ENST00000553527 TXNRD1Q16881 649 aa32.05■■■□□ 2.72
TDP1-205ENST00000553527 SRCAPQ6ZRS2 3230 aa32.04■■■□□ 2.72
TDP1-205ENST00000553527 PCDH11XQ9BZA7 1347 aa32.03■■■□□ 2.72
TDP1-205ENST00000553527 PCDH11YQ9BZA8 1340 aa32.03■■■□□ 2.72
TDP1-205ENST00000553527 MTHFSP49914 203 aa32.03■■■□□ 2.72
TDP1-205ENST00000553527 SPG7Q9UQ90 795 aa32.02■■■□□ 2.72
TDP1-205ENST00000553527 NCAPD2Q15021 1401 aa32.01■■■□□ 2.72
TDP1-205ENST00000553527 CYP27B1O15528 508 aa32.01■■■□□ 2.71
TDP1-205ENST00000553527 IGSF1Q8N6C5 1336 aa31.99■■■□□ 2.71
TDP1-205ENST00000553527 PKD1L3Q7Z443 1732 aa31.98■■■□□ 2.71
TDP1-205ENST00000553527 ANO8Q9HCE9 1232 aaPredicted RBP31.95■■■□□ 2.71
TDP1-205ENST00000553527 IL13P35225 146 aa31.94■■■□□ 2.7
TDP1-205ENST00000553527 AEBP1Q8IUX7 1158 aa31.94■■■□□ 2.7
TDP1-205ENST00000553527 NPC1L1Q9UHC9 1359 aa31.94■■■□□ 2.7
TDP1-205ENST00000553527 SULT6B1Q6IMI4 303 aa31.93■■■□□ 2.7
TDP1-205ENST00000553527 MPRIPQ6WCQ1 1025 aa31.92■■■□□ 2.7
TDP1-205ENST00000553527 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP31.92■■■□□ 2.77e-6■■□□□ 12.8
TDP1-205ENST00000553527 STK32BQ9NY57 414 aa31.91■■■□□ 2.7
TDP1-205ENST00000553527 KCNQ4P56696 695 aa31.9■■■□□ 2.7
TDP1-205ENST00000553527 IFNL2Q8IZJ0 200 aa31.9■■■□□ 2.7
TDP1-205ENST00000553527 ITGB4P16144 1822 aa31.9■■■□□ 2.7
TDP1-205ENST00000553527 PLEKHO1Q53GL0 409 aaPredicted RBP31.88■■■□□ 2.69
TDP1-205ENST00000553527 LRRC4BQ9NT99 713 aa31.88■■■□□ 2.69
TDP1-205ENST00000553527 TOGARAM1Q9Y4F4 1720 aa31.87■■■□□ 2.69
TDP1-205ENST00000553527 DIAPH1O60610 1272 aaKnown RBP31.87■■■□□ 2.69
TDP1-205ENST00000553527 PHKG2P15735 406 aa31.87■■■□□ 2.69
TDP1-205ENST00000553527 NKX1-1Q15270 411 aaPredicted RBP31.86■■■□□ 2.69
TDP1-205ENST00000553527 HMOX1P09601 288 aa31.85■■■□□ 2.69
TDP1-205ENST00000553527 SLC15A2Q16348 729 aa31.85■■■□□ 2.69
TDP1-205ENST00000553527 PDGFDQ9GZP0 370 aaPredicted RBP31.83■■■□□ 2.69
TDP1-205ENST00000553527 SLC27A3Q5K4L6 730 aa31.82■■■□□ 2.68
TDP1-205ENST00000553527 ZNF530Q6P9A1 599 aaPredicted RBP31.82■■■□□ 2.68
TDP1-205ENST00000553527 LY75O60449 1722 aa31.82■■■□□ 2.68
TDP1-205ENST00000553527 AMOTQ4VCS5 1084 aa31.81■■■□□ 2.68
TDP1-205ENST00000553527 CCNL1Q9UK58 526 aaPredicted RBP31.81■■■□□ 2.68
TDP1-205ENST00000553527 LRP5O75197 1615 aa31.8■■■□□ 2.68
TDP1-205ENST00000553527 PIGBQ92521 554 aa31.8■■■□□ 2.68
TDP1-205ENST00000553527 U2SURPO15042 1029 aaKnown RBP31.79■■■□□ 2.68
TDP1-205ENST00000553527 ZNF316A6NFI3 1004 aaPredicted RBP31.78■■■□□ 2.68
TDP1-205ENST00000553527 TMOD3Q9NYL9 352 aa31.78■■■□□ 2.68
TDP1-205ENST00000553527 KDRP35968 1356 aa31.78■■■□□ 2.68
TDP1-205ENST00000553527 ZNF827Q17R98 1081 aa31.77■■■□□ 2.68
TDP1-205ENST00000553527 C1orf141Q5JVX7 400 aa31.77■■■□□ 2.68
TDP1-205ENST00000553527 PPP2R1AP30153 589 aa31.76■■■□□ 2.67
TDP1-205ENST00000553527 PAPPAQ13219 1627 aa31.75■■■□□ 2.67
TDP1-205ENST00000553527 HSP90AB1P08238 724 aaKnown RBP31.75■■■□□ 2.67
TDP1-205ENST00000553527 CFAP53Q96M91 514 aa31.75■■■□□ 2.67
TDP1-205ENST00000553527 PLEKHG2Q9H7P9 1386 aa31.75■■■□□ 2.67
TDP1-205ENST00000553527 PALLDQ8WX93 1383 aa31.74■■■□□ 2.67
TDP1-205ENST00000553527 ZBTB7AO95365 584 aa31.74■■■□□ 2.67
TDP1-205ENST00000553527 DDX10Q13206 875 aaKnown RBP31.74■■■□□ 2.67
TDP1-205ENST00000553527 SPON1Q9HCB6 807 aa31.74■■■□□ 2.67
TDP1-205ENST00000553527 SMARCC1Q92922 1105 aaPredicted RBP31.73■■■□□ 2.67
TDP1-205ENST00000553527 DCAF5Q96JK2 942 aa31.73■■■□□ 2.67
TDP1-205ENST00000553527 CASZ1Q86V15 1759 aa31.73■■■□□ 2.67
TDP1-205ENST00000553527 COL3A1P02461 1466 aaPredicted RBP31.72■■■□□ 2.67
TDP1-205ENST00000553527 AKT1S1Q96B36 256 aa31.71■■■□□ 2.67
TDP1-205ENST00000553527 ASAP1Q9ULH1 1129 aa31.71■■■□□ 2.67
TDP1-205ENST00000553527 ATF5Q9Y2D1 282 aaPredicted RBP31.71■■■□□ 2.67
TDP1-205ENST00000553527 TFCP2L1Q9NZI6 479 aa31.7■■■□□ 2.67
TDP1-205ENST00000553527 ERVV-2B6SEH9 535 aa31.68■■■□□ 2.66
TDP1-205ENST00000553527 CABP4P57796 275 aa31.68■■■□□ 2.66
TDP1-205ENST00000553527 PPP1R1BQ9UD71 204 aaPredicted RBP31.67■■■□□ 2.66
TDP1-205ENST00000553527 KDM6AO15550 1401 aaPredicted RBP31.66■■■□□ 2.66
TDP1-205ENST00000553527 C5P01031 1676 aa31.65■■■□□ 2.66
TDP1-205ENST00000553527 MTHFSDQ2M296 383 aaKnown RBP31.65■■■□□ 2.66
TDP1-205ENST00000553527 ATG3Q9NT62 314 aa31.65■■■□□ 2.66
TDP1-205ENST00000553527 TAF1LQ8IZX4 1826 aa31.65■■■□□ 2.66
TDP1-205ENST00000553527 TUBGCP6Q96RT7 1819 aa31.64■■■□□ 2.66
TDP1-205ENST00000553527 AKAP4Q5JQC9 854 aa31.64■■■□□ 2.66
TDP1-205ENST00000553527 NUDCQ9Y266 331 aa31.64■■■□□ 2.66
TDP1-205ENST00000553527 VIRMAQ69YN4 1812 aaKnown RBP31.63■■■□□ 2.65
TDP1-205ENST00000553527 LOC102724428A0A0B4J2F2 783 aa31.62■■■□□ 2.65
TDP1-205ENST00000553527 SIK1P57059 783 aa31.62■■■□□ 2.65
TDP1-205ENST00000553527 NFATC2IPQ8NCF5 419 aa31.62■■■□□ 2.65
TDP1-205ENST00000553527 SCN11AQ9UI33 1791 aa31.61■■■□□ 2.65
TDP1-205ENST00000553527 PNPLA7Q6ZV29 1317 aa31.61■■■□□ 2.65
TDP1-205ENST00000553527 MSH5O43196 834 aa31.61■■■□□ 2.65
TDP1-205ENST00000553527 LGR6Q9HBX8 967 aa31.61■■■□□ 2.65
TDP1-205ENST00000553527 U2AF1L5P0DN76 240 aaPredicted RBP31.6■■■□□ 2.65
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms