RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 RICTORQ6R327 1708 aa21.58■■□□□ 1.05
SYNE3-202ENST00000553340 ZSCAN23Q3MJ62 389 aa21.58■■□□□ 1.04
SYNE3-202ENST00000553340 CEP85Q6P2H3 762 aa21.58■■□□□ 1.04
SYNE3-202ENST00000553340 MSNP26038 577 aaKnown RBP21.57■■□□□ 1.04
SYNE3-202ENST00000553340 OTUD7AQ8TE49 926 aaPredicted RBP21.57■■□□□ 1.04
SYNE3-202ENST00000553340 REC8O95072 547 aa21.57■■□□□ 1.04
SYNE3-202ENST00000553340 ZRANB1Q9UGI0 708 aa21.57■■□□□ 1.04
SYNE3-202ENST00000553340 PKP1Q13835 747 aa21.56■■□□□ 1.04
SYNE3-202ENST00000553340 RRS1Q15050 365 aaKnown RBP21.55■■□□□ 1.04
SYNE3-202ENST00000553340 WASLO00401 505 aaPredicted RBP21.55■■□□□ 1.04
SYNE3-202ENST00000553340 RGS12O14924 1447 aa21.54■■□□□ 1.04
SYNE3-202ENST00000553340 RTL1A6NKG5 1358 aa21.53■■□□□ 1.04
SYNE3-202ENST00000553340 HS1BP3Q53T59 392 aa21.53■■□□□ 1.04
SYNE3-202ENST00000553340 PTPRCP08575 1304 aa21.53■■□□□ 1.04
SYNE3-202ENST00000553340 APBB1O00213 710 aa21.53■■□□□ 1.04
SYNE3-202ENST00000553340 SMARCA5O60264 1052 aaPredicted RBP21.53■■□□□ 1.04
SYNE3-202ENST00000553340 KIAA1211Q6ZU35 1233 aa21.53■■□□□ 1.04
SYNE3-202ENST00000553340 PRPF40AO75400 957 aaKnown RBP21.52■■□□□ 1.04
SYNE3-202ENST00000553340 ZGPATQ8N5A5 531 aaKnown RBP21.52■■□□□ 1.04
SYNE3-202ENST00000553340 MSH6P52701 1360 aa21.52■■□□□ 1.04
SYNE3-202ENST00000553340 OFD1O75665 1012 aa21.52■■□□□ 1.04
SYNE3-202ENST00000553340 ERC2O15083 957 aa21.51■■□□□ 1.03
SYNE3-202ENST00000553340 CHL1O00533 1208 aa21.51■■□□□ 1.03
SYNE3-202ENST00000553340 KRT24Q2M2I5 525 aa21.5■■□□□ 1.03
SYNE3-202ENST00000553340 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.5■■□□□ 1.03
SYNE3-202ENST00000553340 RBSNQ9H1K0 784 aa21.5■■□□□ 1.03
SYNE3-202ENST00000553340 KIAA0232Q92628 1395 aa21.5■■□□□ 1.03
SYNE3-202ENST00000553340 MEIS3Q99687 375 aa21.5■■□□□ 1.03
SYNE3-202ENST00000553340 RIMBP3CA6NJZ7 1639 aa21.49■■□□□ 1.03
SYNE3-202ENST00000553340 RIMBP3BA6NNM3 1639 aa21.49■■□□□ 1.03
SYNE3-202ENST00000553340 RIMBP3Q9UFD9 1639 aa21.49■■□□□ 1.03
SYNE3-202ENST00000553340 HMMRO75330 724 aa21.49■■□□□ 1.03
SYNE3-202ENST00000553340 PRIM1P49642 420 aaKnown RBP21.49■■□□□ 1.03
SYNE3-202ENST00000553340 NUDT16Q96DE0 195 aaKnown RBP21.49■■□□□ 1.03
SYNE3-202ENST00000553340 ZDHHC9Q9Y397 364 aa21.49■■□□□ 1.03
SYNE3-202ENST00000553340 GPT2Q8TD30 523 aa21.48■■□□□ 1.03
SYNE3-202ENST00000553340 PDLIM2Q96JY6 352 aa21.48■■□□□ 1.03
SYNE3-202ENST00000553340 CCDC61Q9Y6R9 512 aa21.48■■□□□ 1.03
SYNE3-202ENST00000553340 CPS1P31327 1500 aa21.48■■□□□ 1.03
SYNE3-202ENST00000553340 SULT6B1Q6IMI4 303 aa21.47■■□□□ 1.03
SYNE3-202ENST00000553340 SETD1AO15047 1707 aaKnown RBP21.47■■□□□ 1.03
SYNE3-202ENST00000553340 AEBP1Q8IUX7 1158 aa21.46■■□□□ 1.03
SYNE3-202ENST00000553340 OSBPL3Q9H4L5 887 aa21.46■■□□□ 1.03
SYNE3-202ENST00000553340 NOL7Q9UMY1 257 aaKnown RBP21.46■■□□□ 1.03
SYNE3-202ENST00000553340 A2ML1A8K2U0 1454 aa21.46■■□□□ 1.03
SYNE3-202ENST00000553340 MON2Q7Z3U7 1717 aa21.46■■□□□ 1.03
SYNE3-202ENST00000553340 TERF1P54274 439 aa21.45■■□□□ 1.02
SYNE3-202ENST00000553340 MCM10Q7L590 875 aa21.45■■□□□ 1.02
SYNE3-202ENST00000553340 RBM27Q9P2N5 1060 aaKnown RBP21.45■■□□□ 1.02
SYNE3-202ENST00000553340 EIF4A2Q14240 407 aaKnown RBP21.44■■□□□ 1.02
SYNE3-202ENST00000553340 SLC4A2P04920 1241 aa21.44■■□□□ 1.02
SYNE3-202ENST00000553340 PDE1AP54750 535 aa21.44■■□□□ 1.02
SYNE3-202ENST00000553340 LRSAM1Q6UWE0 723 aa21.44■■□□□ 1.02
SYNE3-202ENST00000553340 MCM2P49736 904 aa21.43■■□□□ 1.02
SYNE3-202ENST00000553340 NEK4P51957 841 aa21.43■■□□□ 1.02
SYNE3-202ENST00000553340 OSCARQ8IYS5 282 aa21.43■■□□□ 1.02
SYNE3-202ENST00000553340 NCKAP5LQ9HCH0 1330 aa21.43■■□□□ 1.02
SYNE3-202ENST00000553340 NRKQ7Z2Y5 1582 aa21.43■■□□□ 1.02
SYNE3-202ENST00000553340 VSIG10Q8N0Z9 540 aa21.43■■□□□ 1.02
SYNE3-202ENST00000553340 MBD3O95983 291 aa21.42■■□□□ 1.02
SYNE3-202ENST00000553340 PDCL3Q9H2J4 239 aa21.42■■□□□ 1.02
SYNE3-202ENST00000553340 TMEM63CQ9P1W3 806 aa21.42■■□□□ 1.02
SYNE3-202ENST00000553340 ZNF500O60304 480 aaPredicted RBP21.42■■□□□ 1.02
SYNE3-202ENST00000553340 C3P01024 1663 aa21.42■■□□□ 1.02
SYNE3-202ENST00000553340 TXNDC2Q86VQ3 553 aa21.42■■□□□ 1.02
SYNE3-202ENST00000553340 TMX3Q96JJ7 454 aa21.42■■□□□ 1.02
SYNE3-202ENST00000553340 SYCE3A1L190 88 aa21.41■■□□□ 1.02
SYNE3-202ENST00000553340 CCT4P50991 539 aaKnown RBP21.41■■□□□ 1.02
SYNE3-202ENST00000553340 MCCP23508 829 aa21.4■■□□□ 1.02
SYNE3-202ENST00000553340 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.4■■□□□ 1.02
SYNE3-202ENST00000553340 AKAP12Q02952 1782 aa21.39■■□□□ 1.02
SYNE3-202ENST00000553340 SLC4A10Q6U841 1118 aa21.39■■□□□ 1.01
SYNE3-202ENST00000553340 ITSN1Q15811 1721 aa21.39■■□□□ 1.01
SYNE3-202ENST00000553340 METP08581 1390 aa21.38■■□□□ 1.01
SYNE3-202ENST00000553340 MCM5P33992 734 aa21.38■■□□□ 1.01
SYNE3-202ENST00000553340 FOXD4L5Q5VV16 416 aaPredicted RBP21.38■■□□□ 1.01
SYNE3-202ENST00000553340 FOXD4L4Q8WXT5 416 aaPredicted RBP21.38■■□□□ 1.01
SYNE3-202ENST00000553340 CHAMP1Q96JM3 812 aa21.38■■□□□ 1.01
SYNE3-202ENST00000553340 EIF2AK3Q9NZJ5 1116 aaKnown RBP21.38■■□□□ 1.01
SYNE3-202ENST00000553340 PPP6R1Q9UPN7 881 aa21.38■■□□□ 1.01
SYNE3-202ENST00000553340 ZKSCAN5Q9Y2L8 839 aa21.38■■□□□ 1.01
SYNE3-202ENST00000553340 ESYT1Q9BSJ8 1104 aa21.38■■□□□ 1.01
SYNE3-202ENST00000553340 NSFL1CQ9UNZ2 370 aaKnown RBP21.38■■□□□ 1.01
SYNE3-202ENST00000553340 BRD1O95696 1058 aa21.37■■□□□ 1.01
SYNE3-202ENST00000553340 CRB1P82279 1406 aa21.37■■□□□ 1.01
SYNE3-202ENST00000553340 GNAI2P04899 355 aa21.37■■□□□ 1.01
SYNE3-202ENST00000553340 CUL4AQ13619 759 aa21.37■■□□□ 1.01
SYNE3-202ENST00000553340 R3HCC1Q9Y3T6 440 aaKnown RBP21.37■■□□□ 1.01
SYNE3-202ENST00000553340 SIRT1Q96EB6 747 aa21.36■■□□□ 1.01
SYNE3-202ENST00000553340 CCDC39Q9UFE4 941 aa21.36■■□□□ 1.01
SYNE3-202ENST00000553340 F6X3S4 739 aa21.36■■□□□ 1.01
SYNE3-202ENST00000553340 ANAPC15P60006 121 aa21.36■■□□□ 1.01
SYNE3-202ENST00000553340 INTS4Q96HW7 963 aaKnown RBP21.36■■□□□ 1.01
SYNE3-202ENST00000553340 EXOC6BQ9Y2D4 811 aa21.36■■□□□ 1.01
SYNE3-202ENST00000553340 SPATA31D1Q6ZQQ2 1576 aa21.35■■□□□ 1.01
SYNE3-202ENST00000553340 G2E3Q7L622 706 aa21.35■■□□□ 1.01
SYNE3-202ENST00000553340 NRXN3Q9Y4C0 1643 aa21.35■■□□□ 1.01
SYNE3-202ENST00000553340 XPCQ01831 940 aaPredicted RBP21.35■■□□□ 1.01
SYNE3-202ENST00000553340 CSPP1Q1MSJ5 1256 aa21.35■■□□□ 1.01
SYNE3-202ENST00000553340 LRRCC1Q9C099 1032 aa21.35■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms