RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.81■□□□□ 0.92
SHMT2-204ENST00000553324 SPG7Q9UQ90 795 aa20.81■□□□□ 0.92
SHMT2-204ENST00000553324 MEGF6O75095 1541 aa20.8■□□□□ 0.92
SHMT2-204ENST00000553324 PTF1AQ7RTS3 328 aa20.8■□□□□ 0.92
SHMT2-204ENST00000553324 TNS1Q9HBL0 1735 aaKnown RBP20.8■□□□□ 0.92
SHMT2-204ENST00000553324 PCDH11XQ9BZA7 1347 aa20.79■□□□□ 0.92
SHMT2-204ENST00000553324 PCDH11YQ9BZA8 1340 aa20.79■□□□□ 0.92
SHMT2-204ENST00000553324 ZEB1P37275 1124 aaPredicted RBP20.78■□□□□ 0.92
SHMT2-204ENST00000553324 MTHFSP49914 203 aa20.78■□□□□ 0.92
SHMT2-204ENST00000553324 NCAPD2Q15021 1401 aa20.78■□□□□ 0.92
SHMT2-204ENST00000553324 PLEKHG2Q9H7P9 1386 aa20.77■□□□□ 0.92
SHMT2-204ENST00000553324 IGSF1Q8N6C5 1336 aa20.77■□□□□ 0.91
SHMT2-204ENST00000553324 SYTL4Q96C24 671 aaPredicted RBP20.76■□□□□ 0.91
SHMT2-204ENST00000553324 PRIM1P49642 420 aaKnown RBP20.75■□□□□ 0.91
SHMT2-204ENST00000553324 IL13P35225 146 aa20.74■□□□□ 0.91
SHMT2-204ENST00000553324 R3HDM1Q15032 1099 aaKnown RBP20.74■□□□□ 0.91
SHMT2-204ENST00000553324 TXNRD1Q16881 649 aa20.74■□□□□ 0.91
SHMT2-204ENST00000553324 PROM2Q8N271 834 aa20.74■□□□□ 0.91
SHMT2-204ENST00000553324 RGPD2P0DJD1 1756 aa20.74■□□□□ 0.91
SHMT2-204ENST00000553324 SBF2Q86WG5 1849 aa20.74■□□□□ 0.91
SHMT2-204ENST00000553324 CYP27B1O15528 508 aa20.73■□□□□ 0.91
SHMT2-204ENST00000553324 PSDA5PKW4 1024 aaPredicted RBP20.72■□□□□ 0.91
SHMT2-204ENST00000553324 CNGB1Q14028 1251 aaPredicted RBP20.72■□□□□ 0.91
SHMT2-204ENST00000553324 NKX1-1Q15270 411 aaPredicted RBP20.72■□□□□ 0.91
SHMT2-204ENST00000553324 AMOTQ4VCS5 1084 aa20.72■□□□□ 0.91
SHMT2-204ENST00000553324 PLEKHO1Q53GL0 409 aaPredicted RBP20.72■□□□□ 0.91
SHMT2-204ENST00000553324 IFNL2Q8IZJ0 200 aa20.72■□□□□ 0.91
SHMT2-204ENST00000553324 SRCAPQ6ZRS2 3230 aa20.72■□□□□ 0.91
SHMT2-204ENST00000553324 HMGB2P26583 209 aaKnown RBP20.71■□□□□ 0.91
SHMT2-204ENST00000553324 DIAPH1O60610 1272 aaKnown RBP20.7■□□□□ 0.9
SHMT2-204ENST00000553324 SLC27A3Q5K4L6 730 aa20.7■□□□□ 0.9
SHMT2-204ENST00000553324 SULT6B1Q6IMI4 303 aa20.7■□□□□ 0.9
SHMT2-204ENST00000553324 NHSQ6T4R5 1651 aa20.68■□□□□ 0.9
SHMT2-204ENST00000553324 HSP90AB1P08238 724 aaKnown RBP20.68■□□□□ 0.9
SHMT2-204ENST00000553324 RGPD3A6NKT7 1758 aaPredicted RBP20.67■□□□□ 0.9
SHMT2-204ENST00000553324 RGPD4Q7Z3J3 1758 aa20.67■□□□□ 0.9
SHMT2-204ENST00000553324 PHKG2P15735 406 aa20.67■□□□□ 0.9
SHMT2-204ENST00000553324 CFAP53Q96M91 514 aa20.67■□□□□ 0.9
SHMT2-204ENST00000553324 STK32BQ9NY57 414 aa20.66■□□□□ 0.9
SHMT2-204ENST00000553324 KDRP35968 1356 aa20.65■□□□□ 0.9
SHMT2-204ENST00000553324 MPRIPQ6WCQ1 1025 aa20.65■□□□□ 0.9
SHMT2-204ENST00000553324 KAT6BQ8WYB5 2073 aa20.65■□□□□ 0.9
SHMT2-204ENST00000553324 AEBP1Q8IUX7 1158 aa20.64■□□□□ 0.89
SHMT2-204ENST00000553324 SMARCC1Q92922 1105 aaPredicted RBP20.64■□□□□ 0.89
SHMT2-204ENST00000553324 RREB1Q92766 1687 aa20.64■□□□□ 0.89
SHMT2-204ENST00000553324 SLC15A2Q16348 729 aa20.63■□□□□ 0.89
SHMT2-204ENST00000553324 C1orf141Q5JVX7 400 aa20.63■□□□□ 0.89
SHMT2-204ENST00000553324 DCAF5Q96JK2 942 aa20.63■□□□□ 0.89
SHMT2-204ENST00000553324 ZNF530Q6P9A1 599 aaPredicted RBP20.62■□□□□ 0.89
SHMT2-204ENST00000553324 NUDCQ9Y266 331 aa20.62■□□□□ 0.89
SHMT2-204ENST00000553324 ERVV-2B6SEH9 535 aa20.61■□□□□ 0.89
SHMT2-204ENST00000553324 PPP2R1AP30153 589 aa20.61■□□□□ 0.89
SHMT2-204ENST00000553324 ANO8Q9HCE9 1232 aaPredicted RBP20.61■□□□□ 0.89
SHMT2-204ENST00000553324 TMOD3Q9NYL9 352 aa20.61■□□□□ 0.89
SHMT2-204ENST00000553324 SHANK3Q9BYB0 1731 aa20.61■□□□□ 0.89
SHMT2-204ENST00000553324 PIGBQ92521 554 aa20.6■□□□□ 0.89
SHMT2-204ENST00000553324 LRRC4BQ9NT99 713 aa20.6■□□□□ 0.89
SHMT2-204ENST00000553324 PKD1L3Q7Z443 1732 aa20.6■□□□□ 0.89
SHMT2-204ENST00000553324 NUP188Q5SRE5 1749 aa20.59■□□□□ 0.89
SHMT2-204ENST00000553324 U2SURPO15042 1029 aaKnown RBP20.59■□□□□ 0.89
SHMT2-204ENST00000553324 HMOX1P09601 288 aa20.59■□□□□ 0.89
SHMT2-204ENST00000553324 CCNL1Q9UK58 526 aaPredicted RBP20.59■□□□□ 0.89
SHMT2-204ENST00000553324 BTAF1O14981 1849 aa20.58■□□□□ 0.89
SHMT2-204ENST00000553324 DDX10Q13206 875 aaKnown RBP20.58■□□□□ 0.89
SHMT2-204ENST00000553324 AKAP4Q5JQC9 854 aa20.57■□□□□ 0.88
SHMT2-204ENST00000553324 SPON1Q9HCB6 807 aa20.56■□□□□ 0.88
SHMT2-204ENST00000553324 CABP4P57796 275 aa20.55■□□□□ 0.88
SHMT2-204ENST00000553324 RALBP1Q15311 655 aa20.55■□□□□ 0.88
SHMT2-204ENST00000553324 PALLDQ8WX93 1383 aa20.55■□□□□ 0.88
SHMT2-204ENST00000553324 DOT1LQ8TEK3 1739 aa20.55■□□□□ 0.88
SHMT2-204ENST00000553324 AKT1S1Q96B36 256 aa20.54■□□□□ 0.88
SHMT2-204ENST00000553324 TFCP2L1Q9NZI6 479 aa20.53■□□□□ 0.88
SHMT2-204ENST00000553324 COL3A1P02461 1466 aaPredicted RBP20.52■□□□□ 0.88
SHMT2-204ENST00000553324 KCNQ4P56696 695 aa20.52■□□□□ 0.88
SHMT2-204ENST00000553324 MTHFSDQ2M296 383 aaKnown RBP20.51■□□□□ 0.87
SHMT2-204ENST00000553324 GAS2L2Q8NHY3 880 aa20.51■□□□□ 0.87
SHMT2-204ENST00000553324 ATG3Q9NT62 314 aa20.51■□□□□ 0.87
SHMT2-204ENST00000553324 ASAP1Q9ULH1 1129 aa20.51■□□□□ 0.87
SHMT2-204ENST00000553324 LOC102724428A0A0B4J2F2 783 aa20.5■□□□□ 0.87
SHMT2-204ENST00000553324 FCHSD2O94868 740 aa20.5■□□□□ 0.87
SHMT2-204ENST00000553324 U2AF1L5P0DN76 240 aaPredicted RBP20.5■□□□□ 0.87
SHMT2-204ENST00000553324 SIK1P57059 783 aa20.5■□□□□ 0.87
SHMT2-204ENST00000553324 U2AF1Q01081 240 aaKnown RBP eCLIP20.5■□□□□ 0.87
SHMT2-204ENST00000553324 ZNF827Q17R98 1081 aa20.5■□□□□ 0.87
SHMT2-204ENST00000553324 SLC16A10Q8TF71 515 aa20.5■□□□□ 0.87
SHMT2-204ENST00000553324 NFATC2IPQ8NCF5 419 aa20.49■□□□□ 0.87
SHMT2-204ENST00000553324 MTFR1LQ9H019 292 aa20.49■□□□□ 0.87
SHMT2-204ENST00000553324 FLAD1Q8NFF5 587 aa20.48■□□□□ 0.87
SHMT2-204ENST00000553324 KDM6AO15550 1401 aaPredicted RBP20.47■□□□□ 0.87
SHMT2-204ENST00000553324 LRP5O75197 1615 aa20.47■□□□□ 0.87
SHMT2-204ENST00000553324 ZBTB7AO95365 584 aa20.47■□□□□ 0.87
SHMT2-204ENST00000553324 PDGFDQ9GZP0 370 aaPredicted RBP20.47■□□□□ 0.87
SHMT2-204ENST00000553324 RSPH6AQ9H0K4 717 aa20.47■□□□□ 0.87
SHMT2-204ENST00000553324 PPP1R1BQ9UD71 204 aaPredicted RBP20.47■□□□□ 0.87
SHMT2-204ENST00000553324 RNMTO43148 476 aaKnown RBP20.46■□□□□ 0.87
SHMT2-204ENST00000553324 PRKAR2BP31323 418 aa20.46■□□□□ 0.87
SHMT2-204ENST00000553324 ATP6V1AP38606 617 aa20.46■□□□□ 0.87
SHMT2-204ENST00000553324 SLC52A2Q9HAB3 445 aa20.46■□□□□ 0.87
SHMT2-204ENST00000553324 LY75O60449 1722 aa20.45■□□□□ 0.86
SHMT2-204ENST00000553324 GNAT3A8MTJ3 354 aa20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms