RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-208	ENST00000553289	PCF11	O94913	1555 aa	Known RBP	13.62	□□□□□ -0.23
SYNE2-208	ENST00000553289	HMGB2	P26583	209 aa	Known RBP	13.62	□□□□□ -0.23
SYNE2-208	ENST00000553289	CEBPZ	Q03701	1054 aa	Known RBP	13.62	□□□□□ -0.23
SYNE2-208	ENST00000553289	JAKMIP1	Q96N16	626 aa	Known RBP	13.62	□□□□□ -0.23
SYNE2-208	ENST00000553289	NUP62CL	Q9H1M0	184 aa		13.62	□□□□□ -0.23
SYNE2-208	ENST00000553289	PLEKHH1	Q9ULM0	1364 aa		13.62	□□□□□ -0.23
SYNE2-208	ENST00000553289	NUDT16	Q96DE0	195 aa	Known RBP	13.62	□□□□□ -0.23
SYNE2-208	ENST00000553289	MTMR7	Q9Y216	660 aa		13.62	□□□□□ -0.23
SYNE2-208	ENST00000553289	STK3	Q13188	491 aa		13.62	□□□□□ -0.23
SYNE2-208	ENST00000553289	SYCP1	Q15431	976 aa		13.62	□□□□□ -0.23
SYNE2-208	ENST00000553289	GLRX3	O76003	335 aa	Known RBP	13.61	□□□□□ -0.23
SYNE2-208	ENST00000553289	CCDC184	Q52MB2	194 aa		13.61	□□□□□ -0.23
SYNE2-208	ENST00000553289	CCDC112	Q8NEF3	446 aa		13.61	□□□□□ -0.23
SYNE2-208	ENST00000553289	STRN4	Q9NRL3	753 aa		13.61	□□□□□ -0.23
SYNE2-208	ENST00000553289	FAM177B	A6PVY3	158 aa		13.61	□□□□□ -0.23
SYNE2-208	ENST00000553289	SOGA3	Q5TF21	947 aa		13.61	□□□□□ -0.23
SYNE2-208	ENST00000553289	NSD2	O96028	1365 aa		13.61	□□□□□ -0.23
SYNE2-208	ENST00000553289	PATL2	C9JE40	543 aa	Known RBP	13.61	□□□□□ -0.23
SYNE2-208	ENST00000553289	SMTNL1	A8MU46	457 aa		13.6	□□□□□ -0.23
SYNE2-208	ENST00000553289	ERLIN2	O94905	339 aa		13.6	□□□□□ -0.23
SYNE2-208	ENST00000553289	SAMD1	Q6SPF0	538 aa	Predicted RBP	13.6	□□□□□ -0.23
SYNE2-208	ENST00000553289	BRPF3	Q9ULD4	1205 aa		13.6	□□□□□ -0.23
SYNE2-208	ENST00000553289	KIF14	Q15058	1648 aa		13.6	□□□□□ -0.23
SYNE2-208	ENST00000553289	RRS1	Q15050	365 aa	Known RBP	13.6	□□□□□ -0.23
SYNE2-208	ENST00000553289	ZFYVE27	Q5T4F4	411 aa		13.6	□□□□□ -0.23
SYNE2-208	ENST00000553289	AEBP2	Q6ZN18	517 aa	Predicted RBP	13.6	□□□□□ -0.23
SYNE2-208	ENST00000553289	SPC24	Q8NBT2	197 aa		13.6	□□□□□ -0.23
SYNE2-208	ENST00000553289	RARS	P54136	660 aa	Known RBP	13.6	□□□□□ -0.23
SYNE2-208	ENST00000553289	TTLL5	Q6EMB2	1281 aa		13.6	□□□□□ -0.23
SYNE2-208	ENST00000553289	CWC27	Q6UX04	472 aa	Known RBP	13.6	□□□□□ -0.23
SYNE2-208	ENST00000553289	MYL6B	P14649	208 aa		13.59	□□□□□ -0.23
SYNE2-208	ENST00000553289	BRPF1	P55201	1214 aa	Predicted RBP	13.59	□□□□□ -0.23
SYNE2-208	ENST00000553289	KDM4A	O75164	1064 aa		13.59	□□□□□ -0.23
SYNE2-208	ENST00000553289	ERLIN1	O75477	346 aa		13.59	□□□□□ -0.23
SYNE2-208	ENST00000553289	UBAC1	Q9BSL1	405 aa		13.59	□□□□□ -0.23
SYNE2-208	ENST00000553289	ABCC5	O15440	1437 aa		13.59	□□□□□ -0.23
SYNE2-208	ENST00000553289	MX1	P20591	662 aa		13.59	□□□□□ -0.23
SYNE2-208	ENST00000553289	IL27	Q8NEV9	243 aa		13.59	□□□□□ -0.23
SYNE2-208	ENST00000553289	IMMT	Q16891	758 aa	Known RBP	13.59	□□□□□ -0.23
SYNE2-208	ENST00000553289	DUSP27	Q5VZP5	1158 aa		13.59	□□□□□ -0.23
SYNE2-208	ENST00000553289	DHX29	Q7Z478	1369 aa	Known RBP	13.58	□□□□□ -0.23
SYNE2-208	ENST00000553289	CEP131	Q9UPN4	1083 aa		13.58	□□□□□ -0.23
SYNE2-208	ENST00000553289	MAP4K4	O95819	1239 aa	Predicted RBP	13.58	□□□□□ -0.24
SYNE2-208	ENST00000553289	FKBP4	Q02790	459 aa	Known RBP eCLIP	13.58	□□□□□ -0.24
SYNE2-208	ENST00000553289	AKAP2	Q9Y2D5	859 aa		13.58	□□□□□ -0.24
SYNE2-208	ENST00000553289	ARHGEF11	O15085	1522 aa		13.58	□□□□□ -0.24
SYNE2-208	ENST00000553289	LEKR1	Q6ZMV7	388 aa		13.58	□□□□□ -0.24
SYNE2-208	ENST00000553289	SH2B1	Q9NRF2	756 aa	Predicted RBP	13.58	□□□□□ -0.24
SYNE2-208	ENST00000553289	IQCE	Q6IPM2	695 aa		13.57	□□□□□ -0.24
SYNE2-208	ENST00000553289	IL1RAPL2	Q9NP60	686 aa		13.57	□□□□□ -0.24
SYNE2-208	ENST00000553289	AMOT	Q4VCS5	1084 aa		13.57	□□□□□ -0.24
SYNE2-208	ENST00000553289	LARP1	Q6PKG0	1096 aa	Known RBP	13.57	□□□□□ -0.24
SYNE2-208	ENST00000553289	CCDC191	Q8NCU4	936 aa		13.57	□□□□□ -0.24
SYNE2-208	ENST00000553289	BMP2K	Q9NSY1	1161 aa	Predicted RBP	13.57	□□□□□ -0.24
SYNE2-208	ENST00000553289		U3KPZ7	1027 aa	Predicted RBP	13.57	□□□□□ -0.24
SYNE2-208	ENST00000553289	FAM135A	Q9P2D6	1515 aa		13.57	□□□□□ -0.24
SYNE2-208	ENST00000553289		H0YHG0	523 aa		13.57	□□□□□ -0.24
SYNE2-208	ENST00000553289	TDO2	P48775	406 aa		13.57	□□□□□ -0.24
SYNE2-208	ENST00000553289	MAP3K11	Q16584	847 aa		13.57	□□□□□ -0.24
SYNE2-208	ENST00000553289	UPF3B	Q9BZI7	483 aa	Known RBP	13.57	□□□□□ -0.24
SYNE2-208	ENST00000553289	DEF6	Q9H4E7	631 aa		13.57	□□□□□ -0.24
SYNE2-208	ENST00000553289	PRDM11	Q9NQV5	511 aa		13.57	□□□□□ -0.24
SYNE2-208	ENST00000553289	LRPPRC	P42704	1394 aa	Known RBP	13.57	□□□□□ -0.24
SYNE2-208	ENST00000553289	DDX54	Q8TDD1	881 aa	Known RBP	13.57	□□□□□ -0.24
SYNE2-208	ENST00000553289	EIF3J	O75822	258 aa	Known RBP	13.56	□□□□□ -0.24
SYNE2-208	ENST00000553289	NUP133	Q8WUM0	1156 aa		13.56	□□□□□ -0.24
SYNE2-208	ENST00000553289	NCOA1	Q15788	1441 aa		13.56	□□□□□ -0.24
SYNE2-208	ENST00000553289	KIF2A	O00139	706 aa	Predicted RBP	13.56	□□□□□ -0.24
SYNE2-208	ENST00000553289	WWC2	Q6AWC2	1192 aa		13.56	□□□□□ -0.24
SYNE2-208	ENST00000553289	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	13.56	□□□□□ -0.24
SYNE2-208	ENST00000553289	RAPGEF3	O95398	923 aa		13.56	□□□□□ -0.24
SYNE2-208	ENST00000553289	ESPN	B1AK53	854 aa		13.56	□□□□□ -0.24
SYNE2-208	ENST00000553289	CAST	P20810	708 aa	Known RBP	13.56	□□□□□ -0.24
SYNE2-208	ENST00000553289	CNKSR2	Q8WXI2	1034 aa		13.56	□□□□□ -0.24
SYNE2-208	ENST00000553289	PEG3	Q9GZU2	1588 aa		13.56	□□□□□ -0.24
SYNE2-208	ENST00000553289	HMGB1	P09429	215 aa	Known RBP	13.55	□□□□□ -0.24
SYNE2-208	ENST00000553289	SSH1	Q8WYL5	1049 aa		13.55	□□□□□ -0.24
SYNE2-208	ENST00000553289	SCAND2P	Q9GZW5	306 aa	Predicted RBP	13.55	□□□□□ -0.24
SYNE2-208	ENST00000553289	GOLGA6L10	A6NI86	522 aa		13.55	□□□□□ -0.24
SYNE2-208	ENST00000553289	STARD3NL	O95772	234 aa		13.55	□□□□□ -0.24
SYNE2-208	ENST00000553289	TAF7	Q15545	349 aa	Predicted RBP	13.55	□□□□□ -0.24
SYNE2-208	ENST00000553289	SLC26A8	Q96RN1	970 aa		13.55	□□□□□ -0.24
SYNE2-208	ENST00000553289	PTPRC	P08575	1304 aa		13.55	□□□□□ -0.24
SYNE2-208	ENST00000553289	IGHMBP2	P38935	993 aa	Known RBP	13.55	□□□□□ -0.24
SYNE2-208	ENST00000553289	CCDC181	Q5TID7	509 aa		13.55	□□□□□ -0.24
SYNE2-208	ENST00000553289	SCAF11	Q99590	1463 aa	Known RBP	13.55	□□□□□ -0.24
SYNE2-208	ENST00000553289	AXDND1	Q5T1B0	1012 aa	Predicted RBP	13.54	□□□□□ -0.24
SYNE2-208	ENST00000553289	LAMC3	Q9Y6N6	1575 aa		13.54	□□□□□ -0.24
SYNE2-208	ENST00000553289	EXOC6B	Q9Y2D4	811 aa		13.54	□□□□□ -0.24
SYNE2-208	ENST00000553289	RPRD2	Q5VT52	1461 aa	Known RBP	13.54	□□□□□ -0.24
SYNE2-208	ENST00000553289	AIDA	Q96BJ3	306 aa		13.54	□□□□□ -0.24
SYNE2-208	ENST00000553289	ZNF287	Q9HBT7	754 aa		13.54	□□□□□ -0.24
SYNE2-208	ENST00000553289	ZSCAN30	Q86W11	494 aa		13.53	□□□□□ -0.24
SYNE2-208	ENST00000553289	UNC13A	Q9UPW8	1703 aa		13.53	□□□□□ -0.24
SYNE2-208	ENST00000553289	TMEM132A	Q24JP5	1023 aa		13.53	□□□□□ -0.24
SYNE2-208	ENST00000553289	NUTM1	Q86Y26	1132 aa		13.53	□□□□□ -0.24
SYNE2-208	ENST00000553289	RAI14	Q9P0K7	980 aa		13.53	□□□□□ -0.24
SYNE2-208	ENST00000553289	CCDC196	A0A1B0GTZ2	297 aa		13.52	□□□□□ -0.24
SYNE2-208	ENST00000553289	PDCL2	Q8N4E4	241 aa		13.52	□□□□□ -0.24
SYNE2-208	ENST00000553289	TANGO6	Q9C0B7	1094 aa		13.52	□□□□□ -0.24

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