RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 LY75O60449 1722 aa18.57■□□□□ 0.56
VPS29-211ENST00000553128 DOT1LQ8TEK3 1739 aa18.57■□□□□ 0.56
VPS29-211ENST00000553128 ANKRD36BQ8N2N9 1353 aa18.56■□□□□ 0.56
VPS29-211ENST00000553128 HSPA6P17066 643 aa18.56■□□□□ 0.56
VPS29-211ENST00000553128 GPBP1L1Q9HC44 474 aaPredicted RBP18.56■□□□□ 0.56
VPS29-211ENST00000553128 CCNL1Q9UK58 526 aaPredicted RBP18.55■□□□□ 0.56
VPS29-211ENST00000553128 ADCY9O60503 1353 aa18.55■□□□□ 0.56
VPS29-211ENST00000553128 ROCK2O75116 1388 aaKnown RBP18.54■□□□□ 0.56
VPS29-211ENST00000553128 IP6K1Q92551 441 aa18.53■□□□□ 0.56
VPS29-211ENST00000553128 TMC1Q8TDI8 760 aa18.51■□□□□ 0.55
VPS29-211ENST00000553128 SLC12A5Q9H2X9 1139 aa18.51■□□□□ 0.55
VPS29-211ENST00000553128 WWC3Q9ULE0 1092 aa18.51■□□□□ 0.55
VPS29-211ENST00000553128 FAM208AQ9UK61 1670 aaKnown RBP18.5■□□□□ 0.55
VPS29-211ENST00000553128 MEGF6O75095 1541 aa18.5■□□□□ 0.55
VPS29-211ENST00000553128 FBLN1P23142 703 aa18.5■□□□□ 0.55
VPS29-211ENST00000553128 CD2APQ9Y5K6 639 aa18.49■□□□□ 0.55
VPS29-211ENST00000553128 ZCRB1Q8TBF4 217 aaKnown RBP18.48■□□□□ 0.55
VPS29-211ENST00000553128 SIN3AQ96ST3 1273 aa18.48■□□□□ 0.55
VPS29-211ENST00000553128 EDC4Q6P2E9 1401 aaKnown RBP18.48■□□□□ 0.55
VPS29-211ENST00000553128 A0A1W2PP64 1363 aa18.47■□□□□ 0.55
VPS29-211ENST00000553128 USP47Q96K76 1375 aa18.47■□□□□ 0.55
VPS29-211ENST00000553128 AMIGO3Q86WK7 504 aa18.47■□□□□ 0.55
VPS29-211ENST00000553128 RGPD2P0DJD1 1756 aa18.47■□□□□ 0.55
VPS29-211ENST00000553128 SMIM5Q71RC9 77 aa18.46■□□□□ 0.55
VPS29-211ENST00000553128 HDGFL2Q7Z4V5 671 aaPredicted RBP18.46■□□□□ 0.55
VPS29-211ENST00000553128 MAP3K19Q56UN5 1328 aa18.46■□□□□ 0.55
VPS29-211ENST00000553128 KIF3CO14782 793 aa18.45■□□□□ 0.54
VPS29-211ENST00000553128 HOXC9P31274 260 aa18.45■□□□□ 0.54
VPS29-211ENST00000553128 C5P01031 1676 aa18.44■□□□□ 0.54
VPS29-211ENST00000553128 IGSF1Q8N6C5 1336 aa18.44■□□□□ 0.54
VPS29-211ENST00000553128 USHBP1Q8N6Y0 703 aa18.43■□□□□ 0.54
VPS29-211ENST00000553128 NBPF6Q5VWK0 638 aa18.41■□□□□ 0.54
VPS29-211ENST00000553128 NBPF4Q96M43 638 aa18.41■□□□□ 0.54
VPS29-211ENST00000553128 TOGARAM1Q9Y4F4 1720 aa18.4■□□□□ 0.54
VPS29-211ENST00000553128 AMPHP49418 695 aa18.4■□□□□ 0.54
VPS29-211ENST00000553128 NEUROD1Q13562 356 aa18.4■□□□□ 0.54
VPS29-211ENST00000553128 TERF2IPQ9NYB0 399 aa18.4■□□□□ 0.54
VPS29-211ENST00000553128 PALLDQ8WX93 1383 aa18.4■□□□□ 0.54
VPS29-211ENST00000553128 TAF1LQ8IZX4 1826 aa18.39■□□□□ 0.54
VPS29-211ENST00000553128 PHF14O94880 888 aa18.38■□□□□ 0.53
VPS29-211ENST00000553128 DNAJC5GQ8N7S2 189 aa18.38■□□□□ 0.53
VPS29-211ENST00000553128 FLAD1Q8NFF5 587 aa18.38■□□□□ 0.53
VPS29-211ENST00000553128 C4BP0C0L5 1744 aa18.37■□□□□ 0.53
VPS29-211ENST00000553128 RRS1Q15050 365 aaKnown RBP18.37■□□□□ 0.53
VPS29-211ENST00000553128 MPRIPQ6WCQ1 1025 aa18.37■□□□□ 0.53
VPS29-211ENST00000553128 COG3Q96JB2 828 aa18.37■□□□□ 0.53
VPS29-211ENST00000553128 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.35■□□□□ 0.53
VPS29-211ENST00000553128 APLP1P51693 650 aa18.35■□□□□ 0.53
VPS29-211ENST00000553128 AK7Q96M32 723 aa18.35■□□□□ 0.53
VPS29-211ENST00000553128 CARD11Q9BXL7 1154 aa18.35■□□□□ 0.53
VPS29-211ENST00000553128 RAPGEF4Q8WZA2 1011 aa18.34■□□□□ 0.53
VPS29-211ENST00000553128 UBR3Q6ZT12 1888 aa18.33■□□□□ 0.53
VPS29-211ENST00000553128 CGNL1Q0VF96 1302 aa18.33■□□□□ 0.53
VPS29-211ENST00000553128 CYP27B1O15528 508 aa18.33■□□□□ 0.52
VPS29-211ENST00000553128 CICQ96RK0 1608 aaPredicted RBP18.33■□□□□ 0.52
VPS29-211ENST00000553128 TATP17735 454 aaPredicted RBP18.32■□□□□ 0.52
VPS29-211ENST00000553128 RTL1A6NKG5 1358 aa18.31■□□□□ 0.52
VPS29-211ENST00000553128 PCDH11XQ9BZA7 1347 aa18.31■□□□□ 0.52
VPS29-211ENST00000553128 PCDH11YQ9BZA8 1340 aa18.31■□□□□ 0.52
VPS29-211ENST00000553128 PCNTO95613 3336 aa18.31■□□□□ 0.52
VPS29-211ENST00000553128 LINC00116Q8NCU8 138 aa18.31■□□□□ 0.52
VPS29-211ENST00000553128 TOMM70O94826 608 aa18.3■□□□□ 0.52
VPS29-211ENST00000553128 HTRA3P83110 453 aa18.3■□□□□ 0.52
VPS29-211ENST00000553128 PIGBQ92521 554 aa18.3■□□□□ 0.52
VPS29-211ENST00000553128 NMRK2Q9NPI5 230 aa18.3■□□□□ 0.52
VPS29-211ENST00000553128 PXDNLA1KZ92 1463 aa18.29■□□□□ 0.52
VPS29-211ENST00000553128 HSP90AB2PQ58FF8 381 aa18.29■□□□□ 0.52
VPS29-211ENST00000553128 PUS7Q96PZ0 661 aaKnown RBP18.29■□□□□ 0.52
VPS29-211ENST00000553128 ITGB4P16144 1822 aa18.28■□□□□ 0.52
VPS29-211ENST00000553128 SSFA2P28290 1259 aa18.28■□□□□ 0.52
VPS29-211ENST00000553128 COL13A1Q5TAT6 717 aaPredicted RBP18.28■□□□□ 0.52
VPS29-211ENST00000553128 SMARCC1Q92922 1105 aaPredicted RBP18.28■□□□□ 0.52
VPS29-211ENST00000553128 GGNBP2Q9H3C7 697 aa18.28■□□□□ 0.52
VPS29-211ENST00000553128 KIAA1551Q9HCM1 1747 aa18.28■□□□□ 0.52
VPS29-211ENST00000553128 ITPK1Q13572 414 aa18.27■□□□□ 0.52
VPS29-211ENST00000553128 MAP2P11137 1827 aaKnown RBP18.27■□□□□ 0.52
VPS29-211ENST00000553128 SMG6Q86US8 1419 aaKnown RBP18.26■□□□□ 0.51
VPS29-211ENST00000553128 A0A0G2JLW4 131 aa18.26■□□□□ 0.51
VPS29-211ENST00000553128 FYB1O15117 783 aa18.26■□□□□ 0.51
VPS29-211ENST00000553128 MMP10P09238 476 aa18.26■□□□□ 0.51
VPS29-211ENST00000553128 TESK2Q96S53 571 aa18.26■□□□□ 0.51
VPS29-211ENST00000553128 BCS1LQ9Y276 419 aa18.26■□□□□ 0.51
VPS29-211ENST00000553128 NSD3Q9BZ95 1437 aa18.25■□□□□ 0.51
VPS29-211ENST00000553128 N4BP2Q86UW6 1770 aaPredicted RBP18.25■□□□□ 0.51
VPS29-211ENST00000553128 LOC102724428A0A0B4J2F2 783 aa18.25■□□□□ 0.51
VPS29-211ENST00000553128 SIK1P57059 783 aa18.25■□□□□ 0.51
VPS29-211ENST00000553128 WDR90Q96KV7 1748 aa18.24■□□□□ 0.51
VPS29-211ENST00000553128 GNPATO15228 680 aa18.24■□□□□ 0.51
VPS29-211ENST00000553128 HMGB2P26583 209 aaKnown RBP18.24■□□□□ 0.51
VPS29-211ENST00000553128 INSRP06213 1382 aa18.24■□□□□ 0.51
VPS29-211ENST00000553128 CAPN15O75808 1086 aa18.23■□□□□ 0.51
VPS29-211ENST00000553128 ARHGAP27Q6ZUM4 889 aa18.23■□□□□ 0.51
VPS29-211ENST00000553128 ASAP1Q9ULH1 1129 aa18.23■□□□□ 0.51
VPS29-211ENST00000553128 KIF13BQ9NQT8 1826 aa18.22■□□□□ 0.51
VPS29-211ENST00000553128 NKX1-1Q15270 411 aaPredicted RBP18.22■□□□□ 0.51
VPS29-211ENST00000553128 PKD1L3Q7Z443 1732 aa18.22■□□□□ 0.51
VPS29-211ENST00000553128 ST20-MTHFSA0A0A6YYL1 179 aa18.21■□□□□ 0.51
VPS29-211ENST00000553128 KLRG1Q96E93 195 aa18.21■□□□□ 0.51
VPS29-211ENST00000553128 FLT4P35916 1363 aa18.2■□□□□ 0.5
VPS29-211ENST00000553128 DPEP1P16444 411 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms