RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 ZCRB1Q8TBF4 217 aaKnown RBP19.06■□□□□ 0.64
PTCH1-226ENST00000553011 TRIM37O94972 964 aa19.05■□□□□ 0.64
PTCH1-226ENST00000553011 DDX54Q8TDD1 881 aaKnown RBP19.05■□□□□ 0.64
PTCH1-226ENST00000553011 DIAPH1O60610 1272 aaKnown RBP19.04■□□□□ 0.64
PTCH1-226ENST00000553011 CCDC125Q86Z20 511 aa19.04■□□□□ 0.64
PTCH1-226ENST00000553011 AEBP1Q8IUX7 1158 aa19.04■□□□□ 0.64
PTCH1-226ENST00000553011 BCL9O00512 1426 aa19.02■□□□□ 0.64
PTCH1-226ENST00000553011 DOT1LQ8TEK3 1739 aa19.01■□□□□ 0.63
PTCH1-226ENST00000553011 SF3B2Q13435 895 aaKnown RBP19.01■□□□□ 0.63
PTCH1-226ENST00000553011 RALBP1Q15311 655 aa19.01■□□□□ 0.63
PTCH1-226ENST00000553011 SULT6B1Q6IMI4 303 aa19.01■□□□□ 0.63
PTCH1-226ENST00000553011 DEFB132Q7Z7B7 95 aa19.01■□□□□ 0.63
PTCH1-226ENST00000553011 CFAP53Q96M91 514 aa19.01■□□□□ 0.63
PTCH1-226ENST00000553011 NHSQ6T4R5 1651 aa19.01■□□□□ 0.63
PTCH1-226ENST00000553011 PTF1AQ7RTS3 328 aa19■□□□□ 0.63
PTCH1-226ENST00000553011 KDRP35968 1356 aa19■□□□□ 0.63
PTCH1-226ENST00000553011 HMOX1P09601 288 aa18.99■□□□□ 0.63
PTCH1-226ENST00000553011 ACSBG1Q96GR2 724 aa18.99■□□□□ 0.63
PTCH1-226ENST00000553011 PCDH11XQ9BZA7 1347 aa18.99■□□□□ 0.63
PTCH1-226ENST00000553011 PCDH11YQ9BZA8 1340 aa18.99■□□□□ 0.63
PTCH1-226ENST00000553011 U2SURPO15042 1029 aaKnown RBP18.98■□□□□ 0.63
PTCH1-226ENST00000553011 CYP27B1O15528 508 aa18.98■□□□□ 0.63
PTCH1-226ENST00000553011 BTAF1O14981 1849 aa18.97■□□□□ 0.63
PTCH1-226ENST00000553011 KCNQ2O43526 872 aa18.97■□□□□ 0.63
PTCH1-226ENST00000553011 SPG7Q9UQ90 795 aa18.97■□□□□ 0.63
PTCH1-226ENST00000553011 TOGARAM1Q9Y4F4 1720 aa18.97■□□□□ 0.63
PTCH1-226ENST00000553011 APBA3O96018 575 aa18.96■□□□□ 0.63
PTCH1-226ENST00000553011 BAG6P46379 1132 aa18.96■□□□□ 0.63
PTCH1-226ENST00000553011 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.96■□□□□ 0.63
PTCH1-226ENST00000553011 ITGB4P16144 1822 aa18.95■□□□□ 0.62
PTCH1-226ENST00000553011 PLEKHG2Q9H7P9 1386 aa18.95■□□□□ 0.62
PTCH1-226ENST00000553011 EN1Q05925 392 aaPredicted RBP18.95■□□□□ 0.62
PTCH1-226ENST00000553011 BCL11BQ9C0K0 894 aaPredicted RBP18.95■□□□□ 0.62
PTCH1-226ENST00000553011 PRKRIP1Q9H875 184 aaPredicted RBP18.95■□□□□ 0.62
PTCH1-226ENST00000553011 MYBBP1AQ9BQG0 1328 aaKnown RBP18.95■□□□□ 0.62
PTCH1-226ENST00000553011 PLEKHO1Q53GL0 409 aaPredicted RBP18.93■□□□□ 0.62
PTCH1-226ENST00000553011 NUDCQ9Y266 331 aa18.93■□□□□ 0.62
PTCH1-226ENST00000553011 VIRMAQ69YN4 1812 aaKnown RBP18.93■□□□□ 0.62
PTCH1-226ENST00000553011 RGPD3A6NKT7 1758 aaPredicted RBP18.92■□□□□ 0.62
PTCH1-226ENST00000553011 RGPD4Q7Z3J3 1758 aa18.92■□□□□ 0.62
PTCH1-226ENST00000553011 PHKG2P15735 406 aa18.92■□□□□ 0.62
PTCH1-226ENST00000553011 ZNF530Q6P9A1 599 aaPredicted RBP18.92■□□□□ 0.62
PTCH1-226ENST00000553011 U2AF1L5P0DN76 240 aaPredicted RBP18.91■□□□□ 0.62
PTCH1-226ENST00000553011 PRIM1P49642 420 aaKnown RBP18.91■□□□□ 0.62
PTCH1-226ENST00000553011 U2AF1Q01081 240 aaKnown RBP eCLIP18.91■□□□□ 0.62
PTCH1-226ENST00000553011 EZH2Q15910 746 aaKnown RBP18.91■□□□□ 0.62
PTCH1-226ENST00000553011 AMOTQ4VCS5 1084 aa18.91■□□□□ 0.62
PTCH1-226ENST00000553011 IFNL2Q8IZJ0 200 aa18.91■□□□□ 0.62
PTCH1-226ENST00000553011 RREB1Q92766 1687 aa18.91■□□□□ 0.62
PTCH1-226ENST00000553011 NKX1-1Q15270 411 aaPredicted RBP18.9■□□□□ 0.62
PTCH1-226ENST00000553011 SYTL4Q96C24 671 aaPredicted RBP18.9■□□□□ 0.62
PTCH1-226ENST00000553011 CAMKK2Q96RR4 588 aa18.9■□□□□ 0.62
PTCH1-226ENST00000553011 RSPH6AQ9H0K4 717 aa18.88■□□□□ 0.61
PTCH1-226ENST00000553011 NUP188Q5SRE5 1749 aa18.88■□□□□ 0.61
PTCH1-226ENST00000553011 SCN11AQ9UI33 1791 aa18.88■□□□□ 0.61
PTCH1-226ENST00000553011 PRKAR2BP31323 418 aa18.87■□□□□ 0.61
PTCH1-226ENST00000553011 PLSCR1O15162 318 aa18.86■□□□□ 0.61
PTCH1-226ENST00000553011 MTHFSDQ2M296 383 aaKnown RBP18.86■□□□□ 0.61
PTCH1-226ENST00000553011 C1orf141Q5JVX7 400 aa18.86■□□□□ 0.61
PTCH1-226ENST00000553011 KDM6AO15550 1401 aaPredicted RBP18.85■□□□□ 0.61
PTCH1-226ENST00000553011 LY75O60449 1722 aa18.84■□□□□ 0.61
PTCH1-226ENST00000553011 HSP90AB1P08238 724 aaKnown RBP18.84■□□□□ 0.61
PTCH1-226ENST00000553011 MPRIPQ6WCQ1 1025 aa18.84■□□□□ 0.61
PTCH1-226ENST00000553011 PHACTR3Q96KR7 559 aa18.84■□□□□ 0.61
PTCH1-226ENST00000553011 FCHSD2O94868 740 aa18.83■□□□□ 0.6
PTCH1-226ENST00000553011 AKAP4Q5JQC9 854 aa18.83■□□□□ 0.6
PTCH1-226ENST00000553011 PROM2Q8N271 834 aa18.83■□□□□ 0.6
PTCH1-226ENST00000553011 DCAF5Q96JK2 942 aa18.83■□□□□ 0.6
PTCH1-226ENST00000553011 ANP32CO43423 234 aa18.82■□□□□ 0.6
PTCH1-226ENST00000553011 DLG5Q8TDM6 1919 aa18.82■□□□□ 0.6
PTCH1-226ENST00000553011 TXNRD1Q16881 649 aa18.81■□□□□ 0.6
PTCH1-226ENST00000553011 PIGBQ92521 554 aa18.81■□□□□ 0.6
PTCH1-226ENST00000553011 ADAMTS7Q9UKP4 1686 aa18.81■□□□□ 0.6
PTCH1-226ENST00000553011 GAS2L2Q8NHY3 880 aa18.8■□□□□ 0.6
PTCH1-226ENST00000553011 TMOD3Q9NYL9 352 aa18.8■□□□□ 0.6
PTCH1-226ENST00000553011 ERVV-2B6SEH9 535 aa18.79■□□□□ 0.6
PTCH1-226ENST00000553011 CCDC184Q52MB2 194 aa18.79■□□□□ 0.6
PTCH1-226ENST00000553011 LGR6Q9HBX8 967 aa18.79■□□□□ 0.6
PTCH1-226ENST00000553011 MAP3K5Q99683 1374 aa18.78■□□□□ 0.6
PTCH1-226ENST00000553011 RNMTO43148 476 aaKnown RBP18.77■□□□□ 0.6
PTCH1-226ENST00000553011 CABP4P57796 275 aa18.77■□□□□ 0.6
PTCH1-226ENST00000553011 PLEKHF1Q96S99 279 aa18.77■□□□□ 0.6
PTCH1-226ENST00000553011 KCNQ4P56696 695 aa18.76■□□□□ 0.59
PTCH1-226ENST00000553011 WDR43Q15061 677 aaKnown RBP eCLIP18.76■□□□□ 0.59
PTCH1-226ENST00000553011 PALLDQ8WX93 1383 aa18.76■□□□□ 0.59
PTCH1-226ENST00000553011 TAF1LQ8IZX4 1826 aa18.76■□□□□ 0.59
PTCH1-226ENST00000553011 MRC1P22897 1456 aa18.76■□□□□ 0.59
PTCH1-226ENST00000553011 PAPPAQ13219 1627 aa18.75■□□□□ 0.59
PTCH1-226ENST00000553011 GNAT3A8MTJ3 354 aa18.75■□□□□ 0.59
PTCH1-226ENST00000553011 LRRC4BQ9NT99 713 aa18.75■□□□□ 0.59
PTCH1-226ENST00000553011 ASAP1Q9ULH1 1129 aa18.75■□□□□ 0.59
PTCH1-226ENST00000553011 SIPA1L3O60292 1781 aaPredicted RBP18.75■□□□□ 0.59
PTCH1-226ENST00000553011 NFATC2IPQ8NCF5 419 aa18.74■□□□□ 0.59
PTCH1-226ENST00000553011 ANO8Q9HCE9 1232 aaPredicted RBP18.74■□□□□ 0.59
PTCH1-226ENST00000553011 ADAMTS8Q9UP79 889 aa18.74■□□□□ 0.59
PTCH1-226ENST00000553011 PSDA5PKW4 1024 aaPredicted RBP18.73■□□□□ 0.59
PTCH1-226ENST00000553011 NEFMP07197 916 aa18.73■□□□□ 0.59
PTCH1-226ENST00000553011 IL17REQ8NFR9 667 aa18.73■□□□□ 0.59
PTCH1-226ENST00000553011 SMARCC1Q92922 1105 aaPredicted RBP18.73■□□□□ 0.59
PTCH1-226ENST00000553011 SLC52A2Q9HAB3 445 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms