RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 MEGF6O75095 1541 aa15.98■□□□□ 0.15
NEK3-204ENST00000552973 RAPGEF4Q8WZA2 1011 aa15.97■□□□□ 0.15
NEK3-204ENST00000552973 AKT1S1Q96B36 256 aa15.97■□□□□ 0.15
NEK3-204ENST00000552973 RTL1A6NKG5 1358 aa15.97■□□□□ 0.15
NEK3-204ENST00000552973 SLC27A3Q5K4L6 730 aa15.96■□□□□ 0.15
NEK3-204ENST00000552973 ARXQ96QS3 562 aa15.96■□□□□ 0.15
NEK3-204ENST00000552973 EMILIN1Q9Y6C2 1016 aa15.96■□□□□ 0.15
NEK3-204ENST00000552973 PPM1GO15355 546 aaPredicted RBP15.95■□□□□ 0.14
NEK3-204ENST00000552973 TATP17735 454 aaPredicted RBP15.95■□□□□ 0.14
NEK3-204ENST00000552973 TFCP2L1Q9NZI6 479 aa15.95■□□□□ 0.14
NEK3-204ENST00000552973 KLHL34Q8N239 644 aa15.94■□□□□ 0.14
NEK3-204ENST00000552973 CCNL1Q9UK58 526 aaPredicted RBP15.94■□□□□ 0.14
NEK3-204ENST00000552973 NSD2O96028 1365 aa15.94■□□□□ 0.14
NEK3-204ENST00000552973 BTAF1O14981 1849 aa15.94■□□□□ 0.14
NEK3-204ENST00000552973 SMG6Q86US8 1419 aaKnown RBP15.94■□□□□ 0.14
NEK3-204ENST00000552973 NSD3Q9BZ95 1437 aa15.94■□□□□ 0.14
NEK3-204ENST00000552973 MYOM1P52179 1685 aa15.93■□□□□ 0.14
NEK3-204ENST00000552973 INSRP06213 1382 aa15.93■□□□□ 0.14
NEK3-204ENST00000552973 PNPLA7Q6ZV29 1317 aa15.93■□□□□ 0.14
NEK3-204ENST00000552973 FLT4P35916 1363 aa15.92■□□□□ 0.14
NEK3-204ENST00000552973 TIMELESSQ9UNS1 1208 aa15.92■□□□□ 0.14
NEK3-204ENST00000552973 PAPPAQ13219 1627 aa15.92■□□□□ 0.14
NEK3-204ENST00000552973 FAM208AQ9UK61 1670 aaKnown RBP15.92■□□□□ 0.14
NEK3-204ENST00000552973 CGNL1Q0VF96 1302 aa15.92■□□□□ 0.14
NEK3-204ENST00000552973 MSH5O43196 834 aa15.91■□□□□ 0.14
NEK3-204ENST00000552973 MPRIPQ6WCQ1 1025 aa15.9■□□□□ 0.14
NEK3-204ENST00000552973 SLC16A10Q8TF71 515 aa15.9■□□□□ 0.14
NEK3-204ENST00000552973 CYP27B1O15528 508 aa15.89■□□□□ 0.13
NEK3-204ENST00000552973 POLD1P28340 1107 aa15.89■□□□□ 0.13
NEK3-204ENST00000552973 TNNT2P45379 298 aaPredicted RBP15.89■□□□□ 0.13
NEK3-204ENST00000552973 RGPD2P0DJD1 1756 aa15.89■□□□□ 0.13
NEK3-204ENST00000552973 PCDH11XQ9BZA7 1347 aa15.89■□□□□ 0.13
NEK3-204ENST00000552973 PCDH11YQ9BZA8 1340 aa15.89■□□□□ 0.13
NEK3-204ENST00000552973 KAT6BQ8WYB5 2073 aa15.88■□□□□ 0.13
NEK3-204ENST00000552973 COL23A1Q86Y22 540 aaPredicted RBP15.87■□□□□ 0.13
NEK3-204ENST00000552973 KIF24Q5T7B8 1368 aa15.87■□□□□ 0.13
NEK3-204ENST00000552973 GPR162Q16538 588 aa15.86■□□□□ 0.13
NEK3-204ENST00000552973 PELP1Q8IZL8 1130 aaKnown RBP15.86■□□□□ 0.13
NEK3-204ENST00000552973 EYA1Q99502 592 aa15.86■□□□□ 0.13
NEK3-204ENST00000552973 POLKQ9UBT6 870 aa15.86■□□□□ 0.13
NEK3-204ENST00000552973 DOT1LQ8TEK3 1739 aa15.85■□□□□ 0.13
NEK3-204ENST00000552973 MSL1Q68DK7 614 aa15.85■□□□□ 0.13
NEK3-204ENST00000552973 WASHC2AQ641Q2 1341 aa15.85■□□□□ 0.13
NEK3-204ENST00000552973 CLSPNQ9HAW4 1339 aa15.85■□□□□ 0.13
NEK3-204ENST00000552973 HSPA5P11021 654 aaKnown RBP15.84■□□□□ 0.13
NEK3-204ENST00000552973 NLGN2Q8NFZ4 835 aa15.84■□□□□ 0.13
NEK3-204ENST00000552973 SHANK3Q9BYB0 1731 aa15.84■□□□□ 0.13
NEK3-204ENST00000552973 PALLDQ8WX93 1383 aa15.84■□□□□ 0.13
NEK3-204ENST00000552973 EIF4G2P78344 907 aaKnown RBP eCLIP15.83■□□□□ 0.12
NEK3-204ENST00000552973 SMIM5Q71RC9 77 aa15.83■□□□□ 0.12
NEK3-204ENST00000552973 ZNF784Q8NCA9 323 aaPredicted RBP15.83■□□□□ 0.12
NEK3-204ENST00000552973 PIGBQ92521 554 aa15.83■□□□□ 0.12
NEK3-204ENST00000552973 SPG7Q9UQ90 795 aa15.83■□□□□ 0.12
NEK3-204ENST00000552973 CCER1Q8TC90 406 aaPredicted RBP15.82■□□□□ 0.12
NEK3-204ENST00000552973 PANK3Q9H999 370 aa15.82■□□□□ 0.12
NEK3-204ENST00000552973 MAP3K5Q99683 1374 aa15.82■□□□□ 0.12
NEK3-204ENST00000552973 EIF4A2Q14240 407 aaKnown RBP15.81■□□□□ 0.12
NEK3-204ENST00000552973 NKX1-1Q15270 411 aaPredicted RBP15.81■□□□□ 0.12
NEK3-204ENST00000552973 SMARCC1Q92922 1105 aaPredicted RBP15.81■□□□□ 0.12
NEK3-204ENST00000552973 KIF20BQ96Q89 1820 aa15.81■□□□□ 0.12
NEK3-204ENST00000552973 PHF14O94880 888 aa15.79■□□□□ 0.12
NEK3-204ENST00000552973 AMIGO3Q86WK7 504 aa15.79■□□□□ 0.12
NEK3-204ENST00000552973 AK7Q96M32 723 aa15.79■□□□□ 0.12
NEK3-204ENST00000552973 LY75O60449 1722 aa15.78■□□□□ 0.12
NEK3-204ENST00000552973 PHKG2P15735 406 aa15.78■□□□□ 0.12
NEK3-204ENST00000552973 IFNL2Q8IZJ0 200 aa15.78■□□□□ 0.12
NEK3-204ENST00000552973 TMOD3Q9NYL9 352 aa15.78■□□□□ 0.12
NEK3-204ENST00000552973 ASAP1Q9ULH1 1129 aa15.78■□□□□ 0.12
NEK3-204ENST00000552973 NCAPD2Q15021 1401 aa15.77■□□□□ 0.12
NEK3-204ENST00000552973 FLAD1Q8NFF5 587 aa15.77■□□□□ 0.12
NEK3-204ENST00000552973 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.77■□□□□ 0.126e-7■■■■□ 25.9
NEK3-204ENST00000552973 LOC102724428A0A0B4J2F2 783 aa15.76■□□□□ 0.11
NEK3-204ENST00000552973 SIK1P57059 783 aa15.76■□□□□ 0.11
NEK3-204ENST00000552973 LINC00116Q8NCU8 138 aa15.76■□□□□ 0.11
NEK3-204ENST00000552973 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.75■□□□□ 0.11
NEK3-204ENST00000552973 YBX3P16989 372 aaKnown RBP eCLIP15.75■□□□□ 0.11
NEK3-204ENST00000552973 MORC1Q86VD1 984 aa15.75■□□□□ 0.11
NEK3-204ENST00000552973 HMGB2P26583 209 aaKnown RBP15.74■□□□□ 0.11
NEK3-204ENST00000552973 ATP6V1AP38606 617 aa15.74■□□□□ 0.11
NEK3-204ENST00000552973 ITPK1Q13572 414 aa15.74■□□□□ 0.11
NEK3-204ENST00000552973 ATG3Q9NT62 314 aa15.74■□□□□ 0.11
NEK3-204ENST00000552973 TUBGCP6Q96RT7 1819 aa15.73■□□□□ 0.11
NEK3-204ENST00000552973 WWC3Q9ULE0 1092 aa15.73■□□□□ 0.11
NEK3-204ENST00000552973 QSER1Q2KHR3 1735 aa15.73■□□□□ 0.11
NEK3-204ENST00000552973 IGSF1Q8N6C5 1336 aa15.72■□□□□ 0.11
NEK3-204ENST00000552973 TOGARAM1Q9Y4F4 1720 aa15.72■□□□□ 0.11
NEK3-204ENST00000552973 GNPATO15228 680 aa15.72■□□□□ 0.11
NEK3-204ENST00000552973 AEBP1Q8IUX7 1158 aa15.72■□□□□ 0.11
NEK3-204ENST00000552973 PLEKHO1Q53GL0 409 aaPredicted RBP15.71■□□□□ 0.11
NEK3-204ENST00000552973 RBM42Q9BTD8 480 aaKnown RBP15.71■□□□□ 0.11
NEK3-204ENST00000552973 CD2APQ9Y5K6 639 aa15.71■□□□□ 0.11
NEK3-204ENST00000552973 GRIN3BO60391 1043 aa15.7■□□□□ 0.1
NEK3-204ENST00000552973 ZNF530Q6P9A1 599 aaPredicted RBP15.7■□□□□ 0.1
NEK3-204ENST00000552973 KNSTRNQ9Y448 316 aa15.7■□□□□ 0.1
NEK3-204ENST00000552973 PKD1L3Q7Z443 1732 aa15.7■□□□□ 0.1
NEK3-204ENST00000552973 SSFA2P28290 1259 aa15.69■□□□□ 0.1
NEK3-204ENST00000552973 SLC4A9Q96Q91 983 aa15.69■□□□□ 0.1
NEK3-204ENST00000552973 C5P01031 1676 aa15.69■□□□□ 0.1
NEK3-204ENST00000552973 C4BP0C0L5 1744 aa15.68■□□□□ 0.1
NEK3-204ENST00000552973 MAP2P11137 1827 aaKnown RBP15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms