RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 RGS12O14924 1447 aa9.34□□□□□ -0.91
LIMA1-213ENST00000552720 SMARCA5O60264 1052 aaPredicted RBP9.34□□□□□ -0.91
LIMA1-213ENST00000552720 LMOD3Q0VAK6 560 aa9.34□□□□□ -0.91
LIMA1-213ENST00000552720 PLEKHM2Q8IWE5 1019 aa9.34□□□□□ -0.91
LIMA1-213ENST00000552720 GAS2L2Q8NHY3 880 aa9.33□□□□□ -0.92
LIMA1-213ENST00000552720 MSH6P52701 1360 aa9.33□□□□□ -0.92
LIMA1-213ENST00000552720 ROBO2Q9HCK4 1378 aa9.33□□□□□ -0.92
LIMA1-213ENST00000552720 ATP10DQ9P241 1426 aa9.33□□□□□ -0.92
LIMA1-213ENST00000552720 RGPD8O14715 1765 aaPredicted RBP9.33□□□□□ -0.92
LIMA1-213ENST00000552720 HSP90AA1P07900 732 aaKnown RBP9.33□□□□□ -0.92
LIMA1-213ENST00000552720 CHMP4BQ9H444 224 aaKnown RBP9.33□□□□□ -0.92
LIMA1-213ENST00000552720 DCTPP1Q9H773 170 aa9.33□□□□□ -0.92
LIMA1-213ENST00000552720 ACEP12821 1306 aa9.32□□□□□ -0.92
LIMA1-213ENST00000552720 FOXO3O43524 673 aa9.32□□□□□ -0.92
LIMA1-213ENST00000552720 CDC45O75419 566 aa9.32□□□□□ -0.92
LIMA1-213ENST00000552720 RAB3GAP1Q15042 981 aa9.32□□□□□ -0.92
LIMA1-213ENST00000552720 TTC21BQ7Z4L5 1316 aa9.32□□□□□ -0.92
LIMA1-213ENST00000552720 K7ELQ4 463 aaPredicted RBP9.32□□□□□ -0.92
LIMA1-213ENST00000552720 SSFA2P28290 1259 aa9.32□□□□□ -0.92
LIMA1-213ENST00000552720 INTS3Q68E01 1043 aaKnown RBP9.32□□□□□ -0.92
LIMA1-213ENST00000552720 MEIS3Q99687 375 aa9.32□□□□□ -0.92
LIMA1-213ENST00000552720 RGPD1P0DJD0 1748 aa9.32□□□□□ -0.92
LIMA1-213ENST00000552720 UBR1Q8IWV7 1749 aa9.32□□□□□ -0.92
LIMA1-213ENST00000552720 FMN2Q9NZ56 1722 aa9.32□□□□□ -0.92
LIMA1-213ENST00000552720 DDX11L8A8MPP1 907 aa9.31□□□□□ -0.92
LIMA1-213ENST00000552720 TTC22Q5TAA0 569 aa9.31□□□□□ -0.92
LIMA1-213ENST00000552720 TOPAZ1Q8N9V7 1692 aa9.31□□□□□ -0.92
LIMA1-213ENST00000552720 TECPR2O15040 1411 aa9.31□□□□□ -0.92
LIMA1-213ENST00000552720 NALCNQ8IZF0 1738 aa9.31□□□□□ -0.92
LIMA1-213ENST00000552720 CHL1O00533 1208 aa9.31□□□□□ -0.92
LIMA1-213ENST00000552720 CEP85Q6P2H3 762 aa9.31□□□□□ -0.92
LIMA1-213ENST00000552720 GAS2L3Q86XJ1 694 aa9.31□□□□□ -0.92
LIMA1-213ENST00000552720 ANKRD44Q8N8A2 993 aa9.31□□□□□ -0.92
LIMA1-213ENST00000552720 F6X3S4 739 aa9.3□□□□□ -0.92
LIMA1-213ENST00000552720 EIF5BO60841 1220 aaKnown RBP9.3□□□□□ -0.92
LIMA1-213ENST00000552720 G2E3Q7L622 706 aa9.3□□□□□ -0.92
LIMA1-213ENST00000552720 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.3□□□□□ -0.92
LIMA1-213ENST00000552720 RTL1A6NKG5 1358 aa9.3□□□□□ -0.92
LIMA1-213ENST00000552720 ESF1Q9H501 851 aaKnown RBP9.3□□□□□ -0.92
LIMA1-213ENST00000552720 GRPEL1Q9HAV7 217 aa9.3□□□□□ -0.92
LIMA1-213ENST00000552720 OVOS2A0A0J9YW53 1432 aa9.3□□□□□ -0.92
LIMA1-213ENST00000552720 OVOS2Q6IE36 1432 aa9.3□□□□□ -0.92
LIMA1-213ENST00000552720 ADAMTS13Q76LX8 1427 aa9.29□□□□□ -0.92
LIMA1-213ENST00000552720 MAP3K19Q56UN5 1328 aa9.29□□□□□ -0.92
LIMA1-213ENST00000552720 SDSP20132 328 aa9.29□□□□□ -0.92
LIMA1-213ENST00000552720 LTKP29376 864 aa9.29□□□□□ -0.92
LIMA1-213ENST00000552720 SLC4A10Q6U841 1118 aa9.29□□□□□ -0.92
LIMA1-213ENST00000552720 CIZ1Q9ULV3 898 aaPredicted RBP9.29□□□□□ -0.92
LIMA1-213ENST00000552720 CRB1P82279 1406 aa9.29□□□□□ -0.92
LIMA1-213ENST00000552720 KIF13AQ9H1H9 1805 aa9.29□□□□□ -0.92
LIMA1-213ENST00000552720 USP6P35125 1406 aa9.28□□□□□ -0.92
LIMA1-213ENST00000552720 MRE11P49959 708 aa9.28□□□□□ -0.92
LIMA1-213ENST00000552720 PKP1Q13835 747 aa9.28□□□□□ -0.92
LIMA1-213ENST00000552720 MTHFSDQ2M296 383 aaKnown RBP9.28□□□□□ -0.92
LIMA1-213ENST00000552720 GBP4Q96PP9 640 aa9.28□□□□□ -0.92
LIMA1-213ENST00000552720 SLC26A8Q96RN1 970 aa9.28□□□□□ -0.92
LIMA1-213ENST00000552720 USP26Q9BXU7 913 aa9.28□□□□□ -0.92
LIMA1-213ENST00000552720 SETD1BQ9UPS6 1966 aaKnown RBP9.28□□□□□ -0.92
LIMA1-213ENST00000552720 TMEM2Q9UHN6 1383 aa9.28□□□□□ -0.92
LIMA1-213ENST00000552720 TSHZ3Q63HK5 1081 aa9.28□□□□□ -0.92
LIMA1-213ENST00000552720 KIF24Q5T7B8 1368 aa9.28□□□□□ -0.92
LIMA1-213ENST00000552720 RPAP2Q8IXW5 612 aaPredicted RBP9.27□□□□□ -0.93
LIMA1-213ENST00000552720 SIRT1Q96EB6 747 aa9.27□□□□□ -0.93
LIMA1-213ENST00000552720 TNRQ92752 1358 aa9.27□□□□□ -0.93
LIMA1-213ENST00000552720 TUBGCP6Q96RT7 1819 aa9.27□□□□□ -0.93
LIMA1-213ENST00000552720 NECTIN2Q92692 538 aa9.27□□□□□ -0.93
LIMA1-213ENST00000552720 KIAA0232Q92628 1395 aa9.27□□□□□ -0.93
LIMA1-213ENST00000552720 CEP170BQ9Y4F5 1589 aaPredicted RBP9.27□□□□□ -0.93
LIMA1-213ENST00000552720 PTPRUQ92729 1446 aa9.26□□□□□ -0.93
LIMA1-213ENST00000552720 TSPYL4Q9UJ04 414 aa9.26□□□□□ -0.93
LIMA1-213ENST00000552720 PTPRCP08575 1304 aa9.26□□□□□ -0.93
LIMA1-213ENST00000552720 BAG4O95429 457 aaKnown RBP9.26□□□□□ -0.93
LIMA1-213ENST00000552720 CEBPAP49715 358 aaPredicted RBP9.26□□□□□ -0.93
LIMA1-213ENST00000552720 ZGPATQ8N5A5 531 aaKnown RBP9.26□□□□□ -0.93
LIMA1-213ENST00000552720 CHAMP1Q96JM3 812 aa9.26□□□□□ -0.93
LIMA1-213ENST00000552720 EXOC6BQ9Y2D4 811 aa9.26□□□□□ -0.93
LIMA1-213ENST00000552720 ERBB4Q15303 1308 aa9.25□□□□□ -0.93
LIMA1-213ENST00000552720 PLEKHG3A1L390 1219 aa9.25□□□□□ -0.93
LIMA1-213ENST00000552720 RABEP1Q15276 862 aa9.25□□□□□ -0.93
LIMA1-213ENST00000552720 USP31Q70CQ4 1352 aa9.25□□□□□ -0.93
LIMA1-213ENST00000552720 HDGFP51858 240 aaKnown RBP9.25□□□□□ -0.93
LIMA1-213ENST00000552720 NUTM2GQ5VZR2 741 aa9.25□□□□□ -0.93
LIMA1-213ENST00000552720 FAM208AQ9UK61 1670 aaKnown RBP9.25□□□□□ -0.93
LIMA1-213ENST00000552720 PIK3C2AO00443 1686 aa9.24□□□□□ -0.93
LIMA1-213ENST00000552720 TULP1O00294 542 aaPredicted RBP9.24□□□□□ -0.93
LIMA1-213ENST00000552720 EYA1Q99502 592 aa9.24□□□□□ -0.93
LIMA1-213ENST00000552720 SSH2Q76I76 1423 aa9.24□□□□□ -0.93
LIMA1-213ENST00000552720 XRN1Q8IZH2 1706 aaKnown RBP9.24□□□□□ -0.93
LIMA1-213ENST00000552720 MCTP1Q6DN14 999 aa9.24□□□□□ -0.93
LIMA1-213ENST00000552720 PDE1AP54750 535 aa9.23□□□□□ -0.93
LIMA1-213ENST00000552720 RTF1Q92541 710 aaKnown RBP9.23□□□□□ -0.93
LIMA1-213ENST00000552720 DDX49Q9Y6V7 483 aaKnown RBP9.23□□□□□ -0.93
LIMA1-213ENST00000552720 PNMA6EA0A0J9YXQ4 647 aa9.23□□□□□ -0.93
LIMA1-213ENST00000552720 SKOR2Q2VWA4 1001 aaPredicted RBP9.23□□□□□ -0.93
LIMA1-213ENST00000552720 ARHGEF10O15013 1369 aa9.22□□□□□ -0.93
LIMA1-213ENST00000552720 MARF1Q9Y4F3 1742 aaKnown RBP9.22□□□□□ -0.93
LIMA1-213ENST00000552720 CACNA1FO60840 1977 aa9.22□□□□□ -0.93
LIMA1-213ENST00000552720 AMPHP49418 695 aa9.22□□□□□ -0.93
LIMA1-213ENST00000552720 FOXD4L5Q5VV16 416 aaPredicted RBP9.22□□□□□ -0.93
LIMA1-213ENST00000552720 FOXD4L4Q8WXT5 416 aaPredicted RBP9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms