RNA–Protein interactions for RNA: ENST00000551425.1

PTCH1-222, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 241 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-222ENST00000551425 APLP1P51693 650 aa17.18■□□□□ 0.34
PTCH1-222ENST00000551425 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.18■□□□□ 0.34
PTCH1-222ENST00000551425 NME9Q86XW9 330 aa17.17■□□□□ 0.34
PTCH1-222ENST00000551425 MON2Q7Z3U7 1717 aa17.16■□□□□ 0.34
PTCH1-222ENST00000551425 DNAJC5GQ8N7S2 189 aa17.16■□□□□ 0.34
PTCH1-222ENST00000551425 SBNO2Q9Y2G9 1366 aa17.15■□□□□ 0.34
PTCH1-222ENST00000551425 LTN1O94822 1766 aa17.15■□□□□ 0.34
PTCH1-222ENST00000551425 FLAD1Q8NFF5 587 aa17.15■□□□□ 0.34
PTCH1-222ENST00000551425 IP6K1Q92551 441 aa17.15■□□□□ 0.34
PTCH1-222ENST00000551425 USP47Q96K76 1375 aa17.15■□□□□ 0.34
PTCH1-222ENST00000551425 DOT1LQ8TEK3 1739 aa17.14■□□□□ 0.33
PTCH1-222ENST00000551425 HMGB2P26583 209 aaKnown RBP17.14■□□□□ 0.33
PTCH1-222ENST00000551425 CD163L1Q9NR16 1453 aa17.12■□□□□ 0.33
PTCH1-222ENST00000551425 ZCRB1Q8TBF4 217 aaKnown RBP17.12■□□□□ 0.33
PTCH1-222ENST00000551425 FAM208AQ9UK61 1670 aaKnown RBP17.12■□□□□ 0.33
PTCH1-222ENST00000551425 IGSF1Q8N6C5 1336 aa17.12■□□□□ 0.33
PTCH1-222ENST00000551425 LTV1Q96GA3 475 aaPredicted RBP17.1■□□□□ 0.33
PTCH1-222ENST00000551425 TOMM70O94826 608 aa17.09■□□□□ 0.33
PTCH1-222ENST00000551425 EDC4Q6P2E9 1401 aaKnown RBP17.09■□□□□ 0.33
PTCH1-222ENST00000551425 C5P01031 1676 aa17.07■□□□□ 0.32
PTCH1-222ENST00000551425 CICQ96RK0 1608 aaPredicted RBP17.07■□□□□ 0.32
PTCH1-222ENST00000551425 MEGF6O75095 1541 aa17.07■□□□□ 0.32
PTCH1-222ENST00000551425 HDGFL2Q7Z4V5 671 aaPredicted RBP17.07■□□□□ 0.32
PTCH1-222ENST00000551425 L3MBTL2Q969R5 705 aa17.07■□□□□ 0.32
PTCH1-222ENST00000551425 ROCK2O75116 1388 aaKnown RBP17.06■□□□□ 0.32
PTCH1-222ENST00000551425 CGNL1Q0VF96 1302 aa17.05■□□□□ 0.32
PTCH1-222ENST00000551425 COL13A1Q5TAT6 717 aaPredicted RBP17.05■□□□□ 0.32
PTCH1-222ENST00000551425 WWC3Q9ULE0 1092 aa17.05■□□□□ 0.32
PTCH1-222ENST00000551425 PALLDQ8WX93 1383 aa17.04■□□□□ 0.32
PTCH1-222ENST00000551425 HOXC9P31274 260 aa17.04■□□□□ 0.32
PTCH1-222ENST00000551425 SLC12A5Q9H2X9 1139 aa17.04■□□□□ 0.32
PTCH1-222ENST00000551425 MAP3K19Q56UN5 1328 aa17.03■□□□□ 0.32
PTCH1-222ENST00000551425 AMIGO3Q86WK7 504 aa17.03■□□□□ 0.32
PTCH1-222ENST00000551425 JMYQ8N9B5 988 aa17.03■□□□□ 0.32
PTCH1-222ENST00000551425 TMC1Q8TDI8 760 aa17.03■□□□□ 0.32
PTCH1-222ENST00000551425 AK7Q96M32 723 aa17.03■□□□□ 0.32
PTCH1-222ENST00000551425 TERF2IPQ9NYB0 399 aa17.03■□□□□ 0.32
PTCH1-222ENST00000551425 NSD3Q9BZ95 1437 aa17.03■□□□□ 0.32
PTCH1-222ENST00000551425 A0A1W2PP64 1363 aa17.02■□□□□ 0.31
PTCH1-222ENST00000551425 C4BP0C0L5 1744 aa17.01■□□□□ 0.31
PTCH1-222ENST00000551425 TAF1LQ8IZX4 1826 aa17.01■□□□□ 0.31
PTCH1-222ENST00000551425 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.01■□□□□ 0.31
PTCH1-222ENST00000551425 KLRG1Q96E93 195 aa17.01■□□□□ 0.31
PTCH1-222ENST00000551425 SSFA2P28290 1259 aa17■□□□□ 0.31
PTCH1-222ENST00000551425 AMPHP49418 695 aa17■□□□□ 0.31
PTCH1-222ENST00000551425 NBPF6Q5VWK0 638 aa17■□□□□ 0.31
PTCH1-222ENST00000551425 RBM46Q8TBY0 533 aaKnown RBP17■□□□□ 0.31
PTCH1-222ENST00000551425 SMARCC1Q92922 1105 aaPredicted RBP17■□□□□ 0.31
PTCH1-222ENST00000551425 NBPF4Q96M43 638 aa17■□□□□ 0.31
PTCH1-222ENST00000551425 TOGARAM1Q9Y4F4 1720 aa17■□□□□ 0.31
PTCH1-222ENST00000551425 PHF14O94880 888 aa16.99■□□□□ 0.31
PTCH1-222ENST00000551425 RAPGEF4Q8WZA2 1011 aa16.99■□□□□ 0.31
PTCH1-222ENST00000551425 NMRK2Q9NPI5 230 aa16.99■□□□□ 0.31
PTCH1-222ENST00000551425 WDR90Q96KV7 1748 aa16.99■□□□□ 0.31
PTCH1-222ENST00000551425 PCDH11XQ9BZA7 1347 aa16.98■□□□□ 0.31
PTCH1-222ENST00000551425 PCDH11YQ9BZA8 1340 aa16.98■□□□□ 0.31
PTCH1-222ENST00000551425 PRELPP51888 382 aa16.98■□□□□ 0.31
PTCH1-222ENST00000551425 MPRIPQ6WCQ1 1025 aa16.98■□□□□ 0.31
PTCH1-222ENST00000551425 COG3Q96JB2 828 aa16.98■□□□□ 0.31
PTCH1-222ENST00000551425 RTL1A6NKG5 1358 aa16.98■□□□□ 0.31
PTCH1-222ENST00000551425 CAPN15O75808 1086 aa16.97■□□□□ 0.31
PTCH1-222ENST00000551425 SMIM5Q71RC9 77 aa16.97■□□□□ 0.31
PTCH1-222ENST00000551425 PUS7Q96PZ0 661 aaKnown RBP16.97■□□□□ 0.31
PTCH1-222ENST00000551425 PXDNLA1KZ92 1463 aa16.97■□□□□ 0.31
PTCH1-222ENST00000551425 RGPD2P0DJD1 1756 aa16.97■□□□□ 0.31
PTCH1-222ENST00000551425 UBR3Q6ZT12 1888 aa16.97■□□□□ 0.31
PTCH1-222ENST00000551425 TATP17735 454 aaPredicted RBP16.96■□□□□ 0.31
PTCH1-222ENST00000551425 FBLN1P23142 703 aa16.96■□□□□ 0.31
PTCH1-222ENST00000551425 TGFB2P61812 414 aa16.96■□□□□ 0.31
PTCH1-222ENST00000551425 FSTL1Q12841 308 aa16.96■□□□□ 0.31
PTCH1-222ENST00000551425 TNS4Q8IZW8 715 aa16.96■□□□□ 0.31
PTCH1-222ENST00000551425 HTRA3P83110 453 aa16.95■□□□□ 0.3
PTCH1-222ENST00000551425 USHBP1Q8N6Y0 703 aa16.95■□□□□ 0.3
PTCH1-222ENST00000551425 BCS1LQ9Y276 419 aa16.94■□□□□ 0.3
PTCH1-222ENST00000551425 CYP27B1O15528 508 aa16.93■□□□□ 0.3
PTCH1-222ENST00000551425 MMP10P09238 476 aa16.93■□□□□ 0.3
PTCH1-222ENST00000551425 ARHGAP27Q6ZUM4 889 aa16.93■□□□□ 0.3
PTCH1-222ENST00000551425 C16orf71Q8IYS4 520 aaPredicted RBP16.93■□□□□ 0.3
PTCH1-222ENST00000551425 LINC00116Q8NCU8 138 aa16.93■□□□□ 0.3
PTCH1-222ENST00000551425 LOC102724428A0A0B4J2F2 783 aa16.92■□□□□ 0.3
PTCH1-222ENST00000551425 SIK1P57059 783 aa16.92■□□□□ 0.3
PTCH1-222ENST00000551425 PIGBQ92521 554 aa16.92■□□□□ 0.3
PTCH1-222ENST00000551425 SMG6Q86US8 1419 aaKnown RBP16.92■□□□□ 0.3
PTCH1-222ENST00000551425 KIAA1551Q9HCM1 1747 aa16.92■□□□□ 0.3
PTCH1-222ENST00000551425 KIF13BQ9NQT8 1826 aa16.91■□□□□ 0.3
PTCH1-222ENST00000551425 PLEKHG2Q9H7P9 1386 aa16.91■□□□□ 0.3
PTCH1-222ENST00000551425 A0A0G2JLW4 131 aa16.91■□□□□ 0.3
PTCH1-222ENST00000551425 C10orf71Q711Q0 1435 aa16.9■□□□□ 0.3
PTCH1-222ENST00000551425 GNPATO15228 680 aa16.9■□□□□ 0.3
PTCH1-222ENST00000551425 RRS1Q15050 365 aaKnown RBP16.9■□□□□ 0.3
PTCH1-222ENST00000551425 NKX1-1Q15270 411 aaPredicted RBP16.89■□□□□ 0.29
PTCH1-222ENST00000551425 C9orf131Q5VYM1 1079 aa16.89■□□□□ 0.29
PTCH1-222ENST00000551425 CARD11Q9BXL7 1154 aa16.89■□□□□ 0.29
PTCH1-222ENST00000551425 MAP2P11137 1827 aaKnown RBP16.89■□□□□ 0.29
PTCH1-222ENST00000551425 FCHSD2O94868 740 aa16.88■□□□□ 0.29
PTCH1-222ENST00000551425 ITPK1Q13572 414 aa16.88■□□□□ 0.29
PTCH1-222ENST00000551425 NLGN1Q8N2Q7 840 aa16.88■□□□□ 0.29
PTCH1-222ENST00000551425 SIN3AQ96ST3 1273 aa16.88■□□□□ 0.29
PTCH1-222ENST00000551425 KDM2BQ8NHM5 1336 aa16.88■□□□□ 0.29
PTCH1-222ENST00000551425 INSRP06213 1382 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms