RNA–Protein interactions for RNA: ENST00000550219.1

NUP188-211, Transcript of nucleoporin 188, humanhuman

TSL 1 (best)

Gene NUP188, Length 886 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP188-211ENST00000550219 FLT4P35916 1363 aa18.58■□□□□ 0.57
NUP188-211ENST00000550219 ZNF827Q17R98 1081 aa18.58■□□□□ 0.56
NUP188-211ENST00000550219 NBPF6Q5VWK0 638 aa18.58■□□□□ 0.56
NUP188-211ENST00000550219 ZCRB1Q8TBF4 217 aaKnown RBP18.58■□□□□ 0.56
NUP188-211ENST00000550219 NBPF4Q96M43 638 aa18.58■□□□□ 0.56
NUP188-211ENST00000550219 HSP90AB2PQ58FF8 381 aa18.57■□□□□ 0.56
NUP188-211ENST00000550219 RAPGEF4Q8WZA2 1011 aa18.57■□□□□ 0.56
NUP188-211ENST00000550219 LRRC4BQ9NT99 713 aa18.57■□□□□ 0.56
NUP188-211ENST00000550219 INSRP06213 1382 aa18.56■□□□□ 0.56
NUP188-211ENST00000550219 KAT6BQ8WYB5 2073 aa18.56■□□□□ 0.56
NUP188-211ENST00000550219 DCAF8L1A6NGE4 600 aa18.56■□□□□ 0.56
NUP188-211ENST00000550219 PTGER2P43116 358 aa18.56■□□□□ 0.56
NUP188-211ENST00000550219 PRIM1P49642 420 aaKnown RBP18.56■□□□□ 0.56
NUP188-211ENST00000550219 CARD14Q9BXL6 1004 aa18.56■□□□□ 0.56
NUP188-211ENST00000550219 MTFR1LQ9H019 292 aa18.55■□□□□ 0.56
NUP188-211ENST00000550219 EMILIN1Q9Y6C2 1016 aa18.55■□□□□ 0.56
NUP188-211ENST00000550219 NSD2O96028 1365 aa18.55■□□□□ 0.56
NUP188-211ENST00000550219 PPM1GO15355 546 aaPredicted RBP18.54■□□□□ 0.56
NUP188-211ENST00000550219 TATP17735 454 aaPredicted RBP18.54■□□□□ 0.56
NUP188-211ENST00000550219 KCNQ4P56696 695 aa18.54■□□□□ 0.56
NUP188-211ENST00000550219 YY1P25490 414 aa18.53■□□□□ 0.56
NUP188-211ENST00000550219 LY75O60449 1722 aa18.52■□□□□ 0.56
NUP188-211ENST00000550219 SLC27A3Q5K4L6 730 aa18.52■□□□□ 0.56
NUP188-211ENST00000550219 KIF24Q5T7B8 1368 aa18.52■□□□□ 0.55
NUP188-211ENST00000550219 ANKRD26Q9UPS8 1709 aa18.52■□□□□ 0.55
NUP188-211ENST00000550219 CGNL1Q0VF96 1302 aa18.51■□□□□ 0.55
NUP188-211ENST00000550219 TUBGCP6Q96RT7 1819 aa18.51■□□□□ 0.55
NUP188-211ENST00000550219 FHDC1Q9C0D6 1143 aaPredicted RBP18.51■□□□□ 0.55
NUP188-211ENST00000550219 PCDH11XQ9BZA7 1347 aa18.5■□□□□ 0.55
NUP188-211ENST00000550219 PCDH11YQ9BZA8 1340 aa18.5■□□□□ 0.55
NUP188-211ENST00000550219 QSER1Q2KHR3 1735 aa18.5■□□□□ 0.55
NUP188-211ENST00000550219 AKT1S1Q96B36 256 aa18.5■□□□□ 0.55
NUP188-211ENST00000550219 CCNL1Q9UK58 526 aaPredicted RBP18.49■□□□□ 0.55
NUP188-211ENST00000550219 KLHL34Q8N239 644 aa18.48■□□□□ 0.55
NUP188-211ENST00000550219 SGIP1Q9BQI5 828 aa18.48■□□□□ 0.55
NUP188-211ENST00000550219 TFCP2L1Q9NZI6 479 aa18.48■□□□□ 0.55
NUP188-211ENST00000550219 PKD1L3Q7Z443 1732 aa18.48■□□□□ 0.55
NUP188-211ENST00000550219 TOGARAM1Q9Y4F4 1720 aa18.48■□□□□ 0.55
NUP188-211ENST00000550219 PNPLA7Q6ZV29 1317 aa18.48■□□□□ 0.55
NUP188-211ENST00000550219 EIF4G2P78344 907 aaKnown RBP eCLIP18.47■□□□□ 0.551e-6■■■■■ 44.4
NUP188-211ENST00000550219 ARXQ96QS3 562 aa18.47■□□□□ 0.55
NUP188-211ENST00000550219 HSPA5P11021 654 aaKnown RBP18.46■□□□□ 0.55
NUP188-211ENST00000550219 TNNT2P45379 298 aaPredicted RBP18.46■□□□□ 0.55
NUP188-211ENST00000550219 SYT17Q9BSW7 474 aa18.46■□□□□ 0.55
NUP188-211ENST00000550219 C5P01031 1676 aa18.44■□□□□ 0.54
NUP188-211ENST00000550219 CYP27B1O15528 508 aa18.44■□□□□ 0.54
NUP188-211ENST00000550219 MSH5O43196 834 aa18.44■□□□□ 0.54
NUP188-211ENST00000550219 MPRIPQ6WCQ1 1025 aa18.44■□□□□ 0.54
NUP188-211ENST00000550219 PALLDQ8WX93 1383 aa18.43■□□□□ 0.54
NUP188-211ENST00000550219 NCAPD2Q15021 1401 aa18.43■□□□□ 0.54
NUP188-211ENST00000550219 POLD1P28340 1107 aa18.43■□□□□ 0.54
NUP188-211ENST00000550219 MAP2P11137 1827 aaKnown RBP18.43■□□□□ 0.54
NUP188-211ENST00000550219 SLC16A10Q8TF71 515 aa18.42■□□□□ 0.54
NUP188-211ENST00000550219 WASHC2AQ641Q2 1341 aa18.42■□□□□ 0.54
NUP188-211ENST00000550219 POLKQ9UBT6 870 aa18.41■□□□□ 0.54
NUP188-211ENST00000550219 ITGB4P16144 1822 aa18.4■□□□□ 0.54
NUP188-211ENST00000550219 EYA1Q99502 592 aa18.4■□□□□ 0.54
NUP188-211ENST00000550219 SPG7Q9UQ90 795 aa18.4■□□□□ 0.54
NUP188-211ENST00000550219 PANK3Q9H999 370 aa18.39■□□□□ 0.53
NUP188-211ENST00000550219 MAP3K5Q99683 1374 aa18.39■□□□□ 0.53
NUP188-211ENST00000550219 COL24A1Q17RW2 1714 aa18.38■□□□□ 0.53
NUP188-211ENST00000550219 EIF4A2Q14240 407 aaKnown RBP18.38■□□□□ 0.53
NUP188-211ENST00000550219 MSL1Q68DK7 614 aa18.38■□□□□ 0.53
NUP188-211ENST00000550219 COL23A1Q86Y22 540 aaPredicted RBP18.37■□□□□ 0.53
NUP188-211ENST00000550219 PELP1Q8IZL8 1130 aaKnown RBP18.37■□□□□ 0.53
NUP188-211ENST00000550219 C4BP0C0L5 1744 aa18.37■□□□□ 0.53
NUP188-211ENST00000550219 TAF1LQ8IZX4 1826 aa18.37■□□□□ 0.53
NUP188-211ENST00000550219 SMARCC1Q92922 1105 aaPredicted RBP18.35■□□□□ 0.53
NUP188-211ENST00000550219 GPR162Q16538 588 aa18.34■□□□□ 0.53
NUP188-211ENST00000550219 PIGBQ92521 554 aa18.34■□□□□ 0.53
NUP188-211ENST00000550219 AK7Q96M32 723 aa18.34■□□□□ 0.53
NUP188-211ENST00000550219 TMOD3Q9NYL9 352 aa18.34■□□□□ 0.53
NUP188-211ENST00000550219 PHKG2P15735 406 aa18.33■□□□□ 0.52
NUP188-211ENST00000550219 NLGN2Q8NFZ4 835 aa18.33■□□□□ 0.52
NUP188-211ENST00000550219 PHF14O94880 888 aa18.32■□□□□ 0.52
NUP188-211ENST00000550219 NKX1-1Q15270 411 aaPredicted RBP18.32■□□□□ 0.52
NUP188-211ENST00000550219 MORC1Q86VD1 984 aa18.32■□□□□ 0.52
NUP188-211ENST00000550219 IFNL2Q8IZJ0 200 aa18.32■□□□□ 0.52
NUP188-211ENST00000550219 IGSF1Q8N6C5 1336 aa18.31■□□□□ 0.52
NUP188-211ENST00000550219 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.31■□□□□ 0.524e-7■■■□□ 15.2
NUP188-211ENST00000550219 SMIM5Q71RC9 77 aa18.3■□□□□ 0.52
NUP188-211ENST00000550219 LOC102724428A0A0B4J2F2 783 aa18.29■□□□□ 0.52
NUP188-211ENST00000550219 SIK1P57059 783 aa18.29■□□□□ 0.52
NUP188-211ENST00000550219 FLAD1Q8NFF5 587 aa18.29■□□□□ 0.52
NUP188-211ENST00000550219 ASAP1Q9ULH1 1129 aa18.29■□□□□ 0.52
NUP188-211ENST00000550219 UBR3Q6ZT12 1888 aa18.29■□□□□ 0.52
NUP188-211ENST00000550219 HMGB2P26583 209 aaKnown RBP18.28■□□□□ 0.52
NUP188-211ENST00000550219 AMIGO3Q86WK7 504 aa18.28■□□□□ 0.52
NUP188-211ENST00000550219 ZNF784Q8NCA9 323 aaPredicted RBP18.28■□□□□ 0.52
NUP188-211ENST00000550219 LINC00116Q8NCU8 138 aa18.28■□□□□ 0.52
NUP188-211ENST00000550219 KNSTRNQ9Y448 316 aa18.28■□□□□ 0.52
NUP188-211ENST00000550219 CHD4Q14839 1912 aa18.27■□□□□ 0.52
NUP188-211ENST00000550219 ZNF316A6NFI3 1004 aaPredicted RBP18.27■□□□□ 0.52
NUP188-211ENST00000550219 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.26■□□□□ 0.51
NUP188-211ENST00000550219 ATP6V1AP38606 617 aa18.26■□□□□ 0.51
NUP188-211ENST00000550219 ZNF530Q6P9A1 599 aaPredicted RBP18.26■□□□□ 0.51
NUP188-211ENST00000550219 AEBP1Q8IUX7 1158 aa18.26■□□□□ 0.51
NUP188-211ENST00000550219 PLEKHG2Q9H7P9 1386 aa18.26■□□□□ 0.51
NUP188-211ENST00000550219 KIF7Q2M1P5 1343 aa18.25■□□□□ 0.51
NUP188-211ENST00000550219 GNPATO15228 680 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms