RNA–Protein interactions for RNA: ENST00000550208.1

BRF1-216, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, humanhuman

TSL 3

Gene BRF1, Length 1,040 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1-216ENST00000550208 TRIM37O94972 964 aa30.3■■■□□ 2.44
BRF1-216ENST00000550208 CCDC125Q86Z20 511 aa30.3■■■□□ 2.44
BRF1-216ENST00000550208 PRKRIP1Q9H875 184 aaPredicted RBP30.28■■■□□ 2.44
BRF1-216ENST00000550208 U2SURPO15042 1029 aaKnown RBP30.27■■■□□ 2.44
BRF1-216ENST00000550208 HMOX1P09601 288 aa30.27■■■□□ 2.44
BRF1-216ENST00000550208 RGPD1P0DJD0 1748 aa30.27■■■□□ 2.44
BRF1-216ENST00000550208 SPG7Q9UQ90 795 aa30.25■■■□□ 2.43
BRF1-216ENST00000550208 SF3B2Q13435 895 aaKnown RBP30.24■■■□□ 2.43
BRF1-216ENST00000550208 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP30.24■■■□□ 2.43
BRF1-216ENST00000550208 MYBBP1AQ9BQG0 1328 aaKnown RBP30.23■■■□□ 2.43
BRF1-216ENST00000550208 EP400Q96L91 3159 aa30.23■■■□□ 2.43
BRF1-216ENST00000550208 CYP27B1O15528 508 aa30.23■■■□□ 2.43
BRF1-216ENST00000550208 NUDCQ9Y266 331 aa30.23■■■□□ 2.43
BRF1-216ENST00000550208 KDRP35968 1356 aa30.23■■■□□ 2.43
BRF1-216ENST00000550208 BCL9O00512 1426 aa30.22■■■□□ 2.43
BRF1-216ENST00000550208 PTF1AQ7RTS3 328 aa30.22■■■□□ 2.43
BRF1-216ENST00000550208 ACSBG1Q96GR2 724 aa30.22■■■□□ 2.43
BRF1-216ENST00000550208 SHANK3Q9BYB0 1731 aa30.22■■■□□ 2.43
BRF1-216ENST00000550208 PLEKHO1Q53GL0 409 aaPredicted RBP30.21■■■□□ 2.43
BRF1-216ENST00000550208 PCDH11XQ9BZA7 1347 aa30.21■■■□□ 2.43
BRF1-216ENST00000550208 PCDH11YQ9BZA8 1340 aa30.21■■■□□ 2.43
BRF1-216ENST00000550208 KCNQ2O43526 872 aa30.2■■■□□ 2.43
BRF1-216ENST00000550208 DEFB132Q7Z7B7 95 aa30.2■■■□□ 2.43
BRF1-216ENST00000550208 BCL11BQ9C0K0 894 aaPredicted RBP30.18■■■□□ 2.42
BRF1-216ENST00000550208 SBF2Q86WG5 1849 aa30.17■■■□□ 2.42
BRF1-216ENST00000550208 APBA3O96018 575 aa30.17■■■□□ 2.42
BRF1-216ENST00000550208 U2AF1L5P0DN76 240 aaPredicted RBP30.17■■■□□ 2.42
BRF1-216ENST00000550208 U2AF1Q01081 240 aaKnown RBP eCLIP30.17■■■□□ 2.42
BRF1-216ENST00000550208 PKD1L3Q7Z443 1732 aa30.16■■■□□ 2.42
BRF1-216ENST00000550208 AMOTQ4VCS5 1084 aa30.16■■■□□ 2.42
BRF1-216ENST00000550208 KAT6BQ8WYB5 2073 aa30.15■■■□□ 2.42
BRF1-216ENST00000550208 IFNL2Q8IZJ0 200 aa30.15■■■□□ 2.42
BRF1-216ENST00000550208 PHKG2P15735 406 aa30.14■■■□□ 2.42
BRF1-216ENST00000550208 BAG6P46379 1132 aa30.14■■■□□ 2.42
BRF1-216ENST00000550208 PLEKHG2Q9H7P9 1386 aa30.14■■■□□ 2.41
BRF1-216ENST00000550208 PRIM1P49642 420 aaKnown RBP30.13■■■□□ 2.41
BRF1-216ENST00000550208 EN1Q05925 392 aaPredicted RBP30.13■■■□□ 2.41
BRF1-216ENST00000550208 NKX1-1Q15270 411 aaPredicted RBP30.13■■■□□ 2.41
BRF1-216ENST00000550208 ZNF530Q6P9A1 599 aaPredicted RBP30.13■■■□□ 2.41
BRF1-216ENST00000550208 ANP32CO43423 234 aa30.12■■■□□ 2.41
BRF1-216ENST00000550208 RSPH6AQ9H0K4 717 aa30.12■■■□□ 2.41
BRF1-216ENST00000550208 TNS1Q9HBL0 1735 aaKnown RBP30.1■■■□□ 2.41
BRF1-216ENST00000550208 PRKAR2BP31323 418 aa30.09■■■□□ 2.41
BRF1-216ENST00000550208 SYTL4Q96C24 671 aaPredicted RBP30.09■■■□□ 2.41
BRF1-216ENST00000550208 FCHSD2O94868 740 aa30.08■■■□□ 2.41
BRF1-216ENST00000550208 MTHFSDQ2M296 383 aaKnown RBP30.08■■■□□ 2.41
BRF1-216ENST00000550208 EZH2Q15910 746 aaKnown RBP30.07■■■□□ 2.4
BRF1-216ENST00000550208 PHACTR3Q96KR7 559 aa30.07■■■□□ 2.4
BRF1-216ENST00000550208 CAMKK2Q96RR4 588 aa30.07■■■□□ 2.4
BRF1-216ENST00000550208 C1orf141Q5JVX7 400 aa30.05■■■□□ 2.4
BRF1-216ENST00000550208 NHSQ6T4R5 1651 aa30.04■■■□□ 2.4
BRF1-216ENST00000550208 PLSCR1O15162 318 aa30.03■■■□□ 2.4
BRF1-216ENST00000550208 HSP90AB1P08238 724 aaKnown RBP30.03■■■□□ 2.4
BRF1-216ENST00000550208 DOT1LQ8TEK3 1739 aa30.02■■■□□ 2.4
BRF1-216ENST00000550208 CCDC184Q52MB2 194 aa30.02■■■□□ 2.4
BRF1-216ENST00000550208 AKAP4Q5JQC9 854 aa30.02■■■□□ 2.4
BRF1-216ENST00000550208 MPRIPQ6WCQ1 1025 aa30.02■■■□□ 2.4
BRF1-216ENST00000550208 DCAF5Q96JK2 942 aa30.01■■■□□ 2.39
BRF1-216ENST00000550208 PROM2Q8N271 834 aa29.98■■■□□ 2.39
BRF1-216ENST00000550208 GAS2L2Q8NHY3 880 aa29.98■■■□□ 2.39
BRF1-216ENST00000550208 TOGARAM1Q9Y4F4 1720 aa29.97■■■□□ 2.39
BRF1-216ENST00000550208 BTAF1O14981 1849 aa29.97■■■□□ 2.39
BRF1-216ENST00000550208 PIGBQ92521 554 aa29.97■■■□□ 2.39
BRF1-216ENST00000550208 PLEKHF1Q96S99 279 aa29.97■■■□□ 2.39
BRF1-216ENST00000550208 LGR6Q9HBX8 967 aa29.97■■■□□ 2.39
BRF1-216ENST00000550208 KDM6AO15550 1401 aaPredicted RBP29.96■■■□□ 2.39
BRF1-216ENST00000550208 ERVV-2B6SEH9 535 aa29.96■■■□□ 2.39
BRF1-216ENST00000550208 WDR43Q15061 677 aaKnown RBP eCLIP29.95■■■□□ 2.39
BRF1-216ENST00000550208 ADAMTS8Q9UP79 889 aa29.95■■■□□ 2.39
BRF1-216ENST00000550208 TMOD3Q9NYL9 352 aa29.94■■■□□ 2.38
BRF1-216ENST00000550208 ITGB4P16144 1822 aa29.94■■■□□ 2.38
BRF1-216ENST00000550208 RNMTO43148 476 aaKnown RBP29.93■■■□□ 2.38
BRF1-216ENST00000550208 TXNRD1Q16881 649 aa29.93■■■□□ 2.38
BRF1-216ENST00000550208 PNNQ9H307 717 aaKnown RBP29.93■■■□□ 2.38
BRF1-216ENST00000550208 CABP4P57796 275 aa29.92■■■□□ 2.38
BRF1-216ENST00000550208 GNAT3A8MTJ3 354 aa29.91■■■□□ 2.38
BRF1-216ENST00000550208 NEFMP07197 916 aa29.9■■■□□ 2.38
BRF1-216ENST00000550208 NFATC2IPQ8NCF5 419 aa29.9■■■□□ 2.38
BRF1-216ENST00000550208 IL17REQ8NFR9 667 aa29.89■■■□□ 2.38
BRF1-216ENST00000550208 MAP3K5Q99683 1374 aa29.89■■■□□ 2.37
BRF1-216ENST00000550208 CCDC146Q8IYE0 955 aa29.88■■■□□ 2.37
BRF1-216ENST00000550208 MRS2Q9HD23 443 aa29.88■■■□□ 2.37
BRF1-216ENST00000550208 ASAP1Q9ULH1 1129 aa29.87■■■□□ 2.37
BRF1-216ENST00000550208 ATG3Q9NT62 314 aa29.86■■■□□ 2.37
BRF1-216ENST00000550208 MAPK8IP3Q9UPT6 1336 aa29.86■■■□□ 2.37
BRF1-216ENST00000550208 SCN11AQ9UI33 1791 aa29.85■■■□□ 2.37
BRF1-216ENST00000550208 KCNQ4P56696 695 aa29.85■■■□□ 2.37
BRF1-216ENST00000550208 SLC52A2Q9HAB3 445 aa29.85■■■□□ 2.37
BRF1-216ENST00000550208 LRRC4BQ9NT99 713 aa29.85■■■□□ 2.37
BRF1-216ENST00000550208 RGPD3A6NKT7 1758 aaPredicted RBP29.85■■■□□ 2.37
BRF1-216ENST00000550208 RGPD4Q7Z3J3 1758 aa29.85■■■□□ 2.37
BRF1-216ENST00000550208 NFE2L2Q16236 605 aa29.84■■■□□ 2.37
BRF1-216ENST00000550208 SMARCC1Q92922 1105 aaPredicted RBP29.84■■■□□ 2.37
BRF1-216ENST00000550208 RREB1Q92766 1687 aa29.83■■■□□ 2.37
BRF1-216ENST00000550208 PNISRQ8TF01 805 aaKnown RBP29.83■■■□□ 2.37
BRF1-216ENST00000550208 PALLDQ8WX93 1383 aa29.82■■■□□ 2.36
BRF1-216ENST00000550208 RUNDC1Q96C34 613 aa29.82■■■□□ 2.36
BRF1-216ENST00000550208 MCM10Q7L590 875 aa29.81■■■□□ 2.36
BRF1-216ENST00000550208 RTF1Q92541 710 aaKnown RBP29.81■■■□□ 2.36
BRF1-216ENST00000550208 HTATSF1O43719 755 aaKnown RBP29.8■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms