RNA–Protein interactions for RNA: ENST00000549354.6

LINC00661-204, long intergenic non-protein coding RNA 661, humanhuman

TSL 1 (best) BASIC

Gene LINC00661, Length 3,340 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00661-204ENST00000549354 RBM33Q96EV2 1170 aaKnown RBP13.95□□□□□ -0.18
LINC00661-204ENST00000549354 IFT57Q9NWB7 429 aa13.95□□□□□ -0.18
LINC00661-204ENST00000549354 SLIT3O75094 1523 aa13.95□□□□□ -0.18
LINC00661-204ENST00000549354 PANK2Q9BZ23 570 aa13.95□□□□□ -0.18
LINC00661-204ENST00000549354 NOB1Q9ULX3 412 aaKnown RBP13.95□□□□□ -0.18
LINC00661-204ENST00000549354 BRPF1P55201 1214 aaPredicted RBP13.95□□□□□ -0.18
LINC00661-204ENST00000549354 ESCO1Q5FWF5 840 aa13.94□□□□□ -0.18
LINC00661-204ENST00000549354 SULT6B1Q6IMI4 303 aa13.94□□□□□ -0.18
LINC00661-204ENST00000549354 AEBP1Q8IUX7 1158 aa13.94□□□□□ -0.18
LINC00661-204ENST00000549354 SSH1Q8WYL5 1049 aa13.94□□□□□ -0.18
LINC00661-204ENST00000549354 HOXC9P31274 260 aa13.93□□□□□ -0.18
LINC00661-204ENST00000549354 LMTK3Q96Q04 1460 aa13.93□□□□□ -0.18
LINC00661-204ENST00000549354 KDM4FA0A1W2PPD8 638 aa13.93□□□□□ -0.18
LINC00661-204ENST00000549354 GNAI1P63096 354 aa13.93□□□□□ -0.18
LINC00661-204ENST00000549354 LTN1O94822 1766 aa13.92□□□□□ -0.18
LINC00661-204ENST00000549354 PSME1Q06323 249 aa13.92□□□□□ -0.18
LINC00661-204ENST00000549354 ALDH1L2Q3SY69 923 aa13.92□□□□□ -0.18
LINC00661-204ENST00000549354 AMPHP49418 695 aa13.92□□□□□ -0.18
LINC00661-204ENST00000549354 FOXD4L6Q3SYB3 417 aaPredicted RBP13.92□□□□□ -0.18
LINC00661-204ENST00000549354 ANKRD45Q5TZF3 282 aa13.92□□□□□ -0.18
LINC00661-204ENST00000549354 FOXD4L3Q6VB84 417 aaPredicted RBP13.92□□□□□ -0.18
LINC00661-204ENST00000549354 DZIP1LQ8IYY4 767 aaKnown RBP13.92□□□□□ -0.18
LINC00661-204ENST00000549354 CFAP44Q96MT7 982 aa13.92□□□□□ -0.18
LINC00661-204ENST00000549354 RWDD1Q9H446 243 aaPredicted RBP13.92□□□□□ -0.18
LINC00661-204ENST00000549354 RRAGDQ9NQL2 400 aaPredicted RBP13.92□□□□□ -0.18
LINC00661-204ENST00000549354 STRCQ7RTU9 1775 aa13.92□□□□□ -0.18
LINC00661-204ENST00000549354 ORAI2Q96SN7 254 aa13.92□□□□□ -0.18
LINC00661-204ENST00000549354 NECTIN2Q92692 538 aa13.91□□□□□ -0.18
LINC00661-204ENST00000549354 EYA1Q99502 592 aa13.91□□□□□ -0.18
LINC00661-204ENST00000549354 TMEM94Q12767 1356 aa13.91□□□□□ -0.18
LINC00661-204ENST00000549354 TMEM57Q8N5G2 664 aa13.91□□□□□ -0.18
LINC00661-204ENST00000549354 KCNH5Q8NCM2 988 aa13.91□□□□□ -0.18
LINC00661-204ENST00000549354 ALS2Q96Q42 1657 aa13.91□□□□□ -0.18
LINC00661-204ENST00000549354 NCLP19338 710 aaKnown RBP13.9□□□□□ -0.18
LINC00661-204ENST00000549354 ZKSCAN2Q63HK3 967 aa13.9□□□□□ -0.18
LINC00661-204ENST00000549354 NOL8Q76FK4 1167 aaKnown RBP13.9□□□□□ -0.18
LINC00661-204ENST00000549354 TRIM27P14373 513 aa13.9□□□□□ -0.18
LINC00661-204ENST00000549354 C14orf37Q86TY3 774 aa13.9□□□□□ -0.18
LINC00661-204ENST00000549354 IP6K1Q92551 441 aa13.9□□□□□ -0.18
LINC00661-204ENST00000549354 TBC1D32Q96NH3 1257 aa13.9□□□□□ -0.18
LINC00661-204ENST00000549354 FAM83GA6ND36 823 aa13.9□□□□□ -0.18
LINC00661-204ENST00000549354 RBM42Q9BTD8 480 aaKnown RBP13.9□□□□□ -0.18
LINC00661-204ENST00000549354 C22orf23Q9BZE7 217 aa13.89□□□□□ -0.19
LINC00661-204ENST00000549354 XIRP1Q702N8 1843 aaKnown RBP13.89□□□□□ -0.19
LINC00661-204ENST00000549354 DTNBO60941 627 aa13.89□□□□□ -0.19
LINC00661-204ENST00000549354 MBIPQ9NS73 344 aa13.89□□□□□ -0.19
LINC00661-204ENST00000549354 CRB1P82279 1406 aa13.88□□□□□ -0.19
LINC00661-204ENST00000549354 VAMP4O75379 141 aa13.88□□□□□ -0.19
LINC00661-204ENST00000549354 KRT24Q2M2I5 525 aa13.88□□□□□ -0.19
LINC00661-204ENST00000549354 NUTM2GQ5VZR2 741 aa13.88□□□□□ -0.19
LINC00661-204ENST00000549354 NCAPD2Q15021 1401 aa13.88□□□□□ -0.19
LINC00661-204ENST00000549354 HTATSF1O43719 755 aaKnown RBP13.88□□□□□ -0.19
LINC00661-204ENST00000549354 ANTXR1Q9H6X2 564 aa13.88□□□□□ -0.19
LINC00661-204ENST00000549354 MIS18AQ9NYP9 233 aa13.88□□□□□ -0.19
LINC00661-204ENST00000549354 LRRC37A3O60309 1634 aa13.88□□□□□ -0.19
LINC00661-204ENST00000549354 ARID3AQ99856 593 aa13.87□□□□□ -0.19
LINC00661-204ENST00000549354 CHL1O00533 1208 aa13.87□□□□□ -0.19
LINC00661-204ENST00000549354 XRCC6P12956 609 aaKnown RBP eCLIP13.87□□□□□ -0.19
LINC00661-204ENST00000549354 MVPQ14764 893 aaKnown RBP13.87□□□□□ -0.19
LINC00661-204ENST00000549354 NAP1L5Q96NT1 182 aaPredicted RBP13.87□□□□□ -0.19
LINC00661-204ENST00000549354 GOLGA6L3A6NEY3 463 aa13.87□□□□□ -0.19
LINC00661-204ENST00000549354 FOXO3O43524 673 aa13.87□□□□□ -0.19
LINC00661-204ENST00000549354 KIF16BQ96L93 1317 aa13.86□□□□□ -0.19
LINC00661-204ENST00000549354 CAMTA1Q9Y6Y1 1673 aa13.86□□□□□ -0.19
LINC00661-204ENST00000549354 KRT28Q7Z3Y7 464 aa13.86□□□□□ -0.19
LINC00661-204ENST00000549354 TSPYL6Q8N831 410 aa13.86□□□□□ -0.19
LINC00661-204ENST00000549354 KIAA0232Q92628 1395 aa13.86□□□□□ -0.19
LINC00661-204ENST00000549354 HSPA2P54652 639 aa13.85□□□□□ -0.19
LINC00661-204ENST00000549354 MTHFSDQ2M296 383 aaKnown RBP13.85□□□□□ -0.19
LINC00661-204ENST00000549354 FAM43AQ8N2R8 423 aa13.85□□□□□ -0.19
LINC00661-204ENST00000549354 HSP90AB1P08238 724 aaKnown RBP13.85□□□□□ -0.19
LINC00661-204ENST00000549354 MCM4P33991 863 aa13.85□□□□□ -0.19
LINC00661-204ENST00000549354 ARHGEF25Q86VW2 580 aa13.85□□□□□ -0.19
LINC00661-204ENST00000549354 GAS2L2Q8NHY3 880 aa13.85□□□□□ -0.19
LINC00661-204ENST00000549354 ARHGAP45Q92619 1136 aa13.85□□□□□ -0.19
LINC00661-204ENST00000549354 ATF3P18847 181 aa13.85□□□□□ -0.19
LINC00661-204ENST00000549354 ATF7IPQ6VMQ6 1270 aa13.85□□□□□ -0.19
LINC00661-204ENST00000549354 CADPS2Q86UW7 1296 aa13.85□□□□□ -0.19
LINC00661-204ENST00000549354 GCP02774 474 aa13.84□□□□□ -0.19
LINC00661-204ENST00000549354 TRAK2O60296 914 aa13.84□□□□□ -0.19
LINC00661-204ENST00000549354 CHAMP1Q96JM3 812 aa13.84□□□□□ -0.19
LINC00661-204ENST00000549354 IPO8O15397 1037 aaKnown RBP13.84□□□□□ -0.19
LINC00661-204ENST00000549354 MRPL50Q8N5N7 158 aaKnown RBP13.84□□□□□ -0.19
LINC00661-204ENST00000549354 MED1Q15648 1581 aaPredicted RBP13.83□□□□□ -0.2
LINC00661-204ENST00000549354 SLC4A10Q6U841 1118 aa13.83□□□□□ -0.2
LINC00661-204ENST00000549354 HSCBQ8IWL3 235 aa13.82□□□□□ -0.2
LINC00661-204ENST00000549354 PXDNQ92626 1479 aa13.82□□□□□ -0.2
LINC00661-204ENST00000549354 MSH6P52701 1360 aa13.82□□□□□ -0.2
LINC00661-204ENST00000549354 C8orf58Q8NAV2 365 aa13.82□□□□□ -0.2
LINC00661-204ENST00000549354 L1TD1Q5T7N2 865 aaKnown RBP13.82□□□□□ -0.2
LINC00661-204ENST00000549354 LMO7Q8WWI1 1683 aa13.82□□□□□ -0.2
LINC00661-204ENST00000549354 ABCC6O95255 1503 aa13.81□□□□□ -0.2
LINC00661-204ENST00000549354 TWISTNBQ3B726 338 aaPredicted RBP13.81□□□□□ -0.2
LINC00661-204ENST00000549354 TSHZ3Q63HK5 1081 aa13.81□□□□□ -0.2
LINC00661-204ENST00000549354 MPNDQ8N594 471 aa13.81□□□□□ -0.2
LINC00661-204ENST00000549354 CRYBG1Q9Y4K1 1723 aa13.81□□□□□ -0.2
LINC00661-204ENST00000549354 MCM10Q7L590 875 aa13.81□□□□□ -0.2
LINC00661-204ENST00000549354 C16orf71Q8IYS4 520 aaPredicted RBP13.81□□□□□ -0.2
LINC00661-204ENST00000549354 BABAM1Q9NWV8 329 aa13.8□□□□□ -0.2
LINC00661-204ENST00000549354 SMARCA5O60264 1052 aaPredicted RBP13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms