RNA–Protein interactions for RNA: ENST00000549271.1

DDX54-206, Transcript of DEAD-box helicase 54, humanhuman

TSL 2

Gene DDX54, Length 756 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX54-206ENST00000549271 L3MBTL2Q969R5 705 aa17.46■□□□□ 0.39
DDX54-206ENST00000549271 MSL1Q68DK7 614 aa17.45■□□□□ 0.38
DDX54-206ENST00000549271 DDX54Q8TDD1 881 aaKnown RBP17.45■□□□□ 0.38
DDX54-206ENST00000549271 C5P01031 1676 aa17.45■□□□□ 0.38
DDX54-206ENST00000549271 MSH5O43196 834 aa17.44■□□□□ 0.38
DDX54-206ENST00000549271 APLP1P51693 650 aa17.44■□□□□ 0.38
DDX54-206ENST00000549271 SYTL4Q96C24 671 aaPredicted RBP17.44■□□□□ 0.38
DDX54-206ENST00000549271 CCNL1Q9UK58 526 aaPredicted RBP17.44■□□□□ 0.38
DDX54-206ENST00000549271 TAF1LQ8IZX4 1826 aa17.43■□□□□ 0.38
DDX54-206ENST00000549271 CICQ96RK0 1608 aaPredicted RBP17.41■□□□□ 0.38
DDX54-206ENST00000549271 TRIM26Q12899 539 aaPredicted RBP17.4■□□□□ 0.38
DDX54-206ENST00000549271 NME9Q86XW9 330 aa17.4■□□□□ 0.38
DDX54-206ENST00000549271 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.4■□□□□ 0.38
DDX54-206ENST00000549271 SIN3AQ96ST3 1273 aa17.4■□□□□ 0.38
DDX54-206ENST00000549271 SBNO2Q9Y2G9 1366 aa17.4■□□□□ 0.38
DDX54-206ENST00000549271 CD163L1Q9NR16 1453 aa17.39■□□□□ 0.37
DDX54-206ENST00000549271 WDR90Q96KV7 1748 aa17.39■□□□□ 0.37
DDX54-206ENST00000549271 RGPD2P0DJD1 1756 aa17.38■□□□□ 0.37
DDX54-206ENST00000549271 IGSF1Q8N6C5 1336 aa17.38■□□□□ 0.37
DDX54-206ENST00000549271 USP47Q96K76 1375 aa17.38■□□□□ 0.37
DDX54-206ENST00000549271 FLAD1Q8NFF5 587 aa17.37■□□□□ 0.37
DDX54-206ENST00000549271 IP6K1Q92551 441 aa17.37■□□□□ 0.37
DDX54-206ENST00000549271 TOGARAM1Q9Y4F4 1720 aa17.37■□□□□ 0.37
DDX54-206ENST00000549271 ROCK2O75116 1388 aaKnown RBP17.36■□□□□ 0.37
DDX54-206ENST00000549271 UBR3Q6ZT12 1888 aa17.35■□□□□ 0.37
DDX54-206ENST00000549271 TOMM70O94826 608 aa17.35■□□□□ 0.37
DDX54-206ENST00000549271 COL13A1Q5TAT6 717 aaPredicted RBP17.35■□□□□ 0.37
DDX54-206ENST00000549271 MEGF6O75095 1541 aa17.35■□□□□ 0.37
DDX54-206ENST00000549271 C4BP0C0L5 1744 aa17.35■□□□□ 0.37
DDX54-206ENST00000549271 PCNTO95613 3336 aa17.34■□□□□ 0.37
DDX54-206ENST00000549271 ZCRB1Q8TBF4 217 aaKnown RBP17.34■□□□□ 0.37
DDX54-206ENST00000549271 NEUROD1Q13562 356 aa17.33■□□□□ 0.36
DDX54-206ENST00000549271 WWC3Q9ULE0 1092 aa17.33■□□□□ 0.36
DDX54-206ENST00000549271 EDC4Q6P2E9 1401 aaKnown RBP17.32■□□□□ 0.36
DDX54-206ENST00000549271 HMGB2P26583 209 aaKnown RBP17.32■□□□□ 0.36
DDX54-206ENST00000549271 LTV1Q96GA3 475 aaPredicted RBP17.32■□□□□ 0.36
DDX54-206ENST00000549271 KIF13BQ9NQT8 1826 aa17.31■□□□□ 0.36
DDX54-206ENST00000549271 KIAA1551Q9HCM1 1747 aa17.31■□□□□ 0.36
DDX54-206ENST00000549271 AMIGO3Q86WK7 504 aa17.31■□□□□ 0.36
DDX54-206ENST00000549271 JMYQ8N9B5 988 aa17.31■□□□□ 0.36
DDX54-206ENST00000549271 PALLDQ8WX93 1383 aa17.29■□□□□ 0.36
DDX54-206ENST00000549271 KLRG1Q96E93 195 aa17.29■□□□□ 0.36
DDX54-206ENST00000549271 ITGB4P16144 1822 aa17.28■□□□□ 0.36
DDX54-206ENST00000549271 CAPN15O75808 1086 aa17.27■□□□□ 0.36
DDX54-206ENST00000549271 HOXC9P31274 260 aa17.27■□□□□ 0.36
DDX54-206ENST00000549271 PRELPP51888 382 aa17.27■□□□□ 0.36
DDX54-206ENST00000549271 HDGFL2Q7Z4V5 671 aaPredicted RBP17.27■□□□□ 0.36
DDX54-206ENST00000549271 NMRK2Q9NPI5 230 aa17.27■□□□□ 0.36
DDX54-206ENST00000549271 MAP2P11137 1827 aaKnown RBP17.26■□□□□ 0.35
DDX54-206ENST00000549271 CGNL1Q0VF96 1302 aa17.26■□□□□ 0.35
DDX54-206ENST00000549271 N4BP2Q86UW6 1770 aaPredicted RBP17.26■□□□□ 0.35
DDX54-206ENST00000549271 RBM46Q8TBY0 533 aaKnown RBP17.26■□□□□ 0.35
DDX54-206ENST00000549271 AK7Q96M32 723 aa17.26■□□□□ 0.35
DDX54-206ENST00000549271 NSD3Q9BZ95 1437 aa17.26■□□□□ 0.35
DDX54-206ENST00000549271 PXDNLA1KZ92 1463 aa17.25■□□□□ 0.35
DDX54-206ENST00000549271 MAP3K19Q56UN5 1328 aa17.25■□□□□ 0.35
DDX54-206ENST00000549271 HTRA3P83110 453 aa17.25■□□□□ 0.35
DDX54-206ENST00000549271 A0A1W2PP64 1363 aa17.25■□□□□ 0.35
DDX54-206ENST00000549271 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.24■□□□□ 0.35
DDX54-206ENST00000549271 SMIM5Q71RC9 77 aa17.24■□□□□ 0.35
DDX54-206ENST00000549271 TNS4Q8IZW8 715 aa17.24■□□□□ 0.35
DDX54-206ENST00000549271 SLC12A5Q9H2X9 1139 aa17.24■□□□□ 0.35
DDX54-206ENST00000549271 BRCA1P38398 1863 aaKnown RBP17.24■□□□□ 0.35
DDX54-206ENST00000549271 PHF14O94880 888 aa17.23■□□□□ 0.35
DDX54-206ENST00000549271 SSFA2P28290 1259 aa17.23■□□□□ 0.35
DDX54-206ENST00000549271 TMC1Q8TDI8 760 aa17.23■□□□□ 0.35
DDX54-206ENST00000549271 PUS7Q96PZ0 661 aaKnown RBP17.23■□□□□ 0.35
DDX54-206ENST00000549271 CARD11Q9BXL7 1154 aa17.23■□□□□ 0.35
DDX54-206ENST00000549271 NBPF6Q5VWK0 638 aa17.22■□□□□ 0.35
DDX54-206ENST00000549271 NBPF4Q96M43 638 aa17.22■□□□□ 0.35
DDX54-206ENST00000549271 FSTL1Q12841 308 aa17.21■□□□□ 0.35
DDX54-206ENST00000549271 MPRIPQ6WCQ1 1025 aa17.21■□□□□ 0.35
DDX54-206ENST00000549271 SMARCC1Q92922 1105 aaPredicted RBP17.21■□□□□ 0.35
DDX54-206ENST00000549271 TERF2IPQ9NYB0 399 aa17.21■□□□□ 0.35
DDX54-206ENST00000549271 PKD1L3Q7Z443 1732 aa17.21■□□□□ 0.35
DDX54-206ENST00000549271 PCDH11XQ9BZA7 1347 aa17.21■□□□□ 0.34
DDX54-206ENST00000549271 PCDH11YQ9BZA8 1340 aa17.21■□□□□ 0.34
DDX54-206ENST00000549271 RTL1A6NKG5 1358 aa17.2■□□□□ 0.34
DDX54-206ENST00000549271 ARFGEF1Q9Y6D6 1849 aa17.2■□□□□ 0.34
DDX54-206ENST00000549271 FBLN1P23142 703 aa17.2■□□□□ 0.34
DDX54-206ENST00000549271 AMPHP49418 695 aa17.2■□□□□ 0.34
DDX54-206ENST00000549271 TGFB2P61812 414 aa17.19■□□□□ 0.34
DDX54-206ENST00000549271 USHBP1Q8N6Y0 703 aa17.19■□□□□ 0.34
DDX54-206ENST00000549271 RAPGEF4Q8WZA2 1011 aa17.19■□□□□ 0.34
DDX54-206ENST00000549271 BCS1LQ9Y276 419 aa17.19■□□□□ 0.34
DDX54-206ENST00000549271 LINC00116Q8NCU8 138 aa17.18■□□□□ 0.34
DDX54-206ENST00000549271 COG3Q96JB2 828 aa17.18■□□□□ 0.34
DDX54-206ENST00000549271 C10orf71Q711Q0 1435 aa17.18■□□□□ 0.34
DDX54-206ENST00000549271 PLEKHG2Q9H7P9 1386 aa17.17■□□□□ 0.34
DDX54-206ENST00000549271 CYP27B1O15528 508 aa17.17■□□□□ 0.34
DDX54-206ENST00000549271 MMP10P09238 476 aa17.17■□□□□ 0.34
DDX54-206ENST00000549271 TATP17735 454 aaPredicted RBP17.17■□□□□ 0.34
DDX54-206ENST00000549271 ARHGAP27Q6ZUM4 889 aa17.17■□□□□ 0.34
DDX54-206ENST00000549271 C16orf71Q8IYS4 520 aaPredicted RBP17.17■□□□□ 0.34
DDX54-206ENST00000549271 TNRC6CQ9HCJ0 1690 aaKnown RBP17.16■□□□□ 0.34
DDX54-206ENST00000549271 TONSLQ96HA7 1378 aa17.16■□□□□ 0.34
DDX54-206ENST00000549271 A0A0G2JLW4 131 aa17.16■□□□□ 0.34
DDX54-206ENST00000549271 PIGBQ92521 554 aa17.15■□□□□ 0.34
DDX54-206ENST00000549271 KCPQ6ZWJ8 1503 aa17.15■□□□□ 0.34
DDX54-206ENST00000549271 SMG6Q86US8 1419 aaKnown RBP17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms