RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 ZNF827Q17R98 1081 aa18.01■□□□□ 0.47
PTCH1-218ENST00000548945 SLC16A10Q8TF71 515 aa18.01■□□□□ 0.47
PTCH1-218ENST00000548945 AKT1S1Q96B36 256 aa18.01■□□□□ 0.47
PTCH1-218ENST00000548945 FYB1O15117 783 aa18■□□□□ 0.47
PTCH1-218ENST00000548945 CDCA8Q53HL2 280 aa18■□□□□ 0.47
PTCH1-218ENST00000548945 ZCRB1Q8TBF4 217 aaKnown RBP18■□□□□ 0.47
PTCH1-218ENST00000548945 ARXQ96QS3 562 aa18■□□□□ 0.47
PTCH1-218ENST00000548945 TUBGCP6Q96RT7 1819 aa18■□□□□ 0.47
PTCH1-218ENST00000548945 MEGF6O75095 1541 aa17.99■□□□□ 0.47
PTCH1-218ENST00000548945 SMG6Q86US8 1419 aaKnown RBP17.98■□□□□ 0.47
PTCH1-218ENST00000548945 FBLN1P23142 703 aa17.98■□□□□ 0.47
PTCH1-218ENST00000548945 PRIM1P49642 420 aaKnown RBP17.98■□□□□ 0.47
PTCH1-218ENST00000548945 KIF24Q5T7B8 1368 aa17.98■□□□□ 0.47
PTCH1-218ENST00000548945 NSD2O96028 1365 aa17.97■□□□□ 0.47
PTCH1-218ENST00000548945 TRIM26Q12899 539 aaPredicted RBP17.96■□□□□ 0.47
PTCH1-218ENST00000548945 RRS1Q15050 365 aaKnown RBP17.96■□□□□ 0.47
PTCH1-218ENST00000548945 NBPF6Q5VWK0 638 aa17.96■□□□□ 0.47
PTCH1-218ENST00000548945 SYTL4Q96C24 671 aaPredicted RBP17.96■□□□□ 0.47
PTCH1-218ENST00000548945 NBPF4Q96M43 638 aa17.96■□□□□ 0.47
PTCH1-218ENST00000548945 GGNBP2Q9H3C7 697 aa17.96■□□□□ 0.47
PTCH1-218ENST00000548945 GOLGB1Q14789 3259 aaKnown RBP17.96■□□□□ 0.46
PTCH1-218ENST00000548945 INSRP06213 1382 aa17.95■□□□□ 0.46
PTCH1-218ENST00000548945 RAPGEF4Q8WZA2 1011 aa17.95■□□□□ 0.46
PTCH1-218ENST00000548945 FLT4P35916 1363 aa17.94■□□□□ 0.46
PTCH1-218ENST00000548945 PNPLA7Q6ZV29 1317 aa17.94■□□□□ 0.46
PTCH1-218ENST00000548945 HMGB2P26583 209 aaKnown RBP17.93■□□□□ 0.46
PTCH1-218ENST00000548945 TFCP2L1Q9NZI6 479 aa17.93■□□□□ 0.46
PTCH1-218ENST00000548945 TATP17735 454 aaPredicted RBP17.92■□□□□ 0.46
PTCH1-218ENST00000548945 POLD1P28340 1107 aa17.92■□□□□ 0.46
PTCH1-218ENST00000548945 TIMELESSQ9UNS1 1208 aa17.92■□□□□ 0.46
PTCH1-218ENST00000548945 HSP90AB2PQ58FF8 381 aa17.91■□□□□ 0.46
PTCH1-218ENST00000548945 CCNL1Q9UK58 526 aaPredicted RBP17.91■□□□□ 0.46
PTCH1-218ENST00000548945 ANKRD26Q9UPS8 1709 aa17.91■□□□□ 0.46
PTCH1-218ENST00000548945 PCDH11XQ9BZA7 1347 aa17.91■□□□□ 0.46
PTCH1-218ENST00000548945 PCDH11YQ9BZA8 1340 aa17.91■□□□□ 0.46
PTCH1-218ENST00000548945 USHBP1Q8N6Y0 703 aa17.9■□□□□ 0.46
PTCH1-218ENST00000548945 TAF1LQ8IZX4 1826 aa17.9■□□□□ 0.46
PTCH1-218ENST00000548945 PKD1L3Q7Z443 1732 aa17.89■□□□□ 0.46
PTCH1-218ENST00000548945 KCNQ4P56696 695 aa17.89■□□□□ 0.45
PTCH1-218ENST00000548945 ZNF784Q8NCA9 323 aaPredicted RBP17.89■□□□□ 0.45
PTCH1-218ENST00000548945 C5P01031 1676 aa17.89■□□□□ 0.45
PTCH1-218ENST00000548945 NCAPD2Q15021 1401 aa17.89■□□□□ 0.45
PTCH1-218ENST00000548945 MAP2P11137 1827 aaKnown RBP17.88■□□□□ 0.45
PTCH1-218ENST00000548945 ITGB4P16144 1822 aa17.88■□□□□ 0.45
PTCH1-218ENST00000548945 CARD14Q9BXL6 1004 aa17.88■□□□□ 0.45
PTCH1-218ENST00000548945 NSD3Q9BZ95 1437 aa17.88■□□□□ 0.45
PTCH1-218ENST00000548945 GPR162Q16538 588 aa17.85■□□□□ 0.45
PTCH1-218ENST00000548945 CLSPNQ9HAW4 1339 aa17.85■□□□□ 0.45
PTCH1-218ENST00000548945 TOGARAM1Q9Y4F4 1720 aa17.85■□□□□ 0.45
PTCH1-218ENST00000548945 CYP27B1O15528 508 aa17.84■□□□□ 0.45
PTCH1-218ENST00000548945 FLAD1Q8NFF5 587 aa17.84■□□□□ 0.45
PTCH1-218ENST00000548945 EMILIN1Q9Y6C2 1016 aa17.84■□□□□ 0.45
PTCH1-218ENST00000548945 PALLDQ8WX93 1383 aa17.83■□□□□ 0.45
PTCH1-218ENST00000548945 WASHC2AQ641Q2 1341 aa17.83■□□□□ 0.44
PTCH1-218ENST00000548945 COL23A1Q86Y22 540 aaPredicted RBP17.83■□□□□ 0.44
PTCH1-218ENST00000548945 SMARCC1Q92922 1105 aaPredicted RBP17.83■□□□□ 0.44
PTCH1-218ENST00000548945 NKX1-1Q15270 411 aaPredicted RBP17.82■□□□□ 0.44
PTCH1-218ENST00000548945 KLHL34Q8N239 644 aa17.82■□□□□ 0.44
PTCH1-218ENST00000548945 MPRIPQ6WCQ1 1025 aa17.81■□□□□ 0.44
PTCH1-218ENST00000548945 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.81■□□□□ 0.44
PTCH1-218ENST00000548945 C4BP0C0L5 1744 aa17.81■□□□□ 0.44
PTCH1-218ENST00000548945 PLEKHG2Q9H7P9 1386 aa17.8■□□□□ 0.44
PTCH1-218ENST00000548945 MSH5O43196 834 aa17.8■□□□□ 0.44
PTCH1-218ENST00000548945 SPG7Q9UQ90 795 aa17.8■□□□□ 0.44
PTCH1-218ENST00000548945 UBR3Q6ZT12 1888 aa17.8■□□□□ 0.44
PTCH1-218ENST00000548945 NLGN2Q8NFZ4 835 aa17.79■□□□□ 0.44
PTCH1-218ENST00000548945 PPM1GO15355 546 aaPredicted RBP17.78■□□□□ 0.44
PTCH1-218ENST00000548945 GRIN3BO60391 1043 aa17.77■□□□□ 0.44
PTCH1-218ENST00000548945 PIGBQ92521 554 aa17.77■□□□□ 0.44
PTCH1-218ENST00000548945 EYA1Q99502 592 aa17.77■□□□□ 0.44
PTCH1-218ENST00000548945 POLKQ9UBT6 870 aa17.77■□□□□ 0.44
PTCH1-218ENST00000548945 CD2APQ9Y5K6 639 aa17.76■□□□□ 0.43
PTCH1-218ENST00000548945 MSL1Q68DK7 614 aa17.75■□□□□ 0.43
PTCH1-218ENST00000548945 PELP1Q8IZL8 1130 aaKnown RBP17.75■□□□□ 0.43
PTCH1-218ENST00000548945 AK7Q96M32 723 aa17.75■□□□□ 0.43
PTCH1-218ENST00000548945 IFNL2Q8IZJ0 200 aa17.73■□□□□ 0.43
PTCH1-218ENST00000548945 TMOD3Q9NYL9 352 aa17.73■□□□□ 0.43
PTCH1-218ENST00000548945 ZNF831Q5JPB2 1677 aa17.72■□□□□ 0.43
PTCH1-218ENST00000548945 LOC102724428A0A0B4J2F2 783 aa17.72■□□□□ 0.43
PTCH1-218ENST00000548945 PHKG2P15735 406 aa17.72■□□□□ 0.43
PTCH1-218ENST00000548945 YBX3P16989 372 aaKnown RBP eCLIP17.72■□□□□ 0.43
PTCH1-218ENST00000548945 SSFA2P28290 1259 aa17.72■□□□□ 0.43
PTCH1-218ENST00000548945 SIK1P57059 783 aa17.72■□□□□ 0.43
PTCH1-218ENST00000548945 C1QTNF8P60827 252 aa17.72■□□□□ 0.43
PTCH1-218ENST00000548945 EIF4A2Q14240 407 aaKnown RBP17.71■□□□□ 0.43
PTCH1-218ENST00000548945 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.7■□□□□ 0.42
PTCH1-218ENST00000548945 IGSF1Q8N6C5 1336 aa17.7■□□□□ 0.42
PTCH1-218ENST00000548945 CEP350Q5VT06 3117 aa17.69■□□□□ 0.42
PTCH1-218ENST00000548945 EIF4G2P78344 907 aaKnown RBP eCLIP17.69■□□□□ 0.42
PTCH1-218ENST00000548945 AMIGO3Q86WK7 504 aa17.69■□□□□ 0.42
PTCH1-218ENST00000548945 ASAP1Q9ULH1 1129 aa17.69■□□□□ 0.42
PTCH1-218ENST00000548945 GIGYF1O75420 1035 aaPredicted RBP17.68■□□□□ 0.42
PTCH1-218ENST00000548945 LINC00116Q8NCU8 138 aa17.68■□□□□ 0.42
PTCH1-218ENST00000548945 POLR3GLQ9BT43 218 aa17.68■□□□□ 0.42
PTCH1-218ENST00000548945 ERVV-2B6SEH9 535 aa17.67■□□□□ 0.42
PTCH1-218ENST00000548945 PHF14O94880 888 aa17.67■□□□□ 0.42
PTCH1-218ENST00000548945 HSP90AB1P08238 724 aaKnown RBP17.67■□□□□ 0.42
PTCH1-218ENST00000548945 PCGF6Q9BYE7 350 aa17.67■□□□□ 0.42
PTCH1-218ENST00000548945 ATG3Q9NT62 314 aa17.67■□□□□ 0.42
PTCH1-218ENST00000548945 ATP6V1AP38606 617 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms