RNA–Protein interactions for RNA: ENST00000548817.1

TROAP-208, Transcript of trophinin associated protein, humanhuman

TSL 3

Gene TROAP, Length 480 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TROAP-208ENST00000548817 IGSF1Q8N6C5 1336 aa12.17□□□□□ -0.46
TROAP-208ENST00000548817 FSTL1Q12841 308 aa12.17□□□□□ -0.46
TROAP-208ENST00000548817 CABP2Q9NPB3 220 aa12.17□□□□□ -0.46
TROAP-208ENST00000548817 PCDH10Q9P2E7 1040 aa12.17□□□□□ -0.46
TROAP-208ENST00000548817 CCNL1Q9UK58 526 aaPredicted RBP12.17□□□□□ -0.46
TROAP-208ENST00000548817 CENPJQ9HC77 1338 aaPredicted RBP12.16□□□□□ -0.46
TROAP-208ENST00000548817 NBPF1Q3BBV0 1214 aa12.16□□□□□ -0.46
TROAP-208ENST00000548817 DOT1LQ8TEK3 1739 aa12.16□□□□□ -0.46
TROAP-208ENST00000548817 MSL1Q68DK7 614 aa12.15□□□□□ -0.46
TROAP-208ENST00000548817 USP54Q70EL1 1684 aa12.15□□□□□ -0.46
TROAP-208ENST00000548817 FAM208AQ9UK61 1670 aaKnown RBP12.15□□□□□ -0.46
TROAP-208ENST00000548817 NSD2O96028 1365 aa12.15□□□□□ -0.46
TROAP-208ENST00000548817 C5P01031 1676 aa12.14□□□□□ -0.47
TROAP-208ENST00000548817 WWC3Q9ULE0 1092 aa12.14□□□□□ -0.47
TROAP-208ENST00000548817 C10orf71Q711Q0 1435 aa12.13□□□□□ -0.47
TROAP-208ENST00000548817 SOX12O15370 315 aa12.13□□□□□ -0.47
TROAP-208ENST00000548817 PRIM1P49642 420 aaKnown RBP12.13□□□□□ -0.47
TROAP-208ENST00000548817 KCNQ4P56696 695 aa12.13□□□□□ -0.47
TROAP-208ENST00000548817 USP47Q96K76 1375 aa12.13□□□□□ -0.47
TROAP-208ENST00000548817 C16orf71Q8IYS4 520 aaPredicted RBP12.12□□□□□ -0.47
TROAP-208ENST00000548817 SYTL4Q96C24 671 aaPredicted RBP12.12□□□□□ -0.47
TROAP-208ENST00000548817 USP31Q70CQ4 1352 aa12.12□□□□□ -0.47
TROAP-208ENST00000548817 PLEKHG2Q9H7P9 1386 aa12.12□□□□□ -0.47
TROAP-208ENST00000548817 LTN1O94822 1766 aa12.12□□□□□ -0.47
TROAP-208ENST00000548817 EVC2Q86UK5 1308 aa12.11□□□□□ -0.47
TROAP-208ENST00000548817 NSD3Q9BZ95 1437 aa12.11□□□□□ -0.47
TROAP-208ENST00000548817 DDX54Q8TDD1 881 aaKnown RBP12.11□□□□□ -0.47
TROAP-208ENST00000548817 NMRK2Q9NPI5 230 aa12.11□□□□□ -0.47
TROAP-208ENST00000548817 TAF1LQ8IZX4 1826 aa12.1□□□□□ -0.47
TROAP-208ENST00000548817 ANKRD24Q8TF21 1146 aa12.1□□□□□ -0.47
TROAP-208ENST00000548817 MON2Q7Z3U7 1717 aa12.09□□□□□ -0.47
TROAP-208ENST00000548817 HTRA3P83110 453 aa12.08□□□□□ -0.48
TROAP-208ENST00000548817 L3MBTL2Q969R5 705 aa12.08□□□□□ -0.48
TROAP-208ENST00000548817 KIF13BQ9NQT8 1826 aa12.08□□□□□ -0.48
TROAP-208ENST00000548817 KDM2BQ8NHM5 1336 aa12.08□□□□□ -0.48
TROAP-208ENST00000548817 KTN1Q86UP2 1357 aaKnown RBP12.07□□□□□ -0.48
TROAP-208ENST00000548817 TNRC6CQ9HCJ0 1690 aaKnown RBP12.07□□□□□ -0.48
TROAP-208ENST00000548817 HSPA1AP0DMV8 641 aaKnown RBP12.07□□□□□ -0.48
TROAP-208ENST00000548817 HSPA1BP0DMV9 641 aaKnown RBP12.07□□□□□ -0.48
TROAP-208ENST00000548817 UBR3Q6ZT12 1888 aa12.06□□□□□ -0.48
TROAP-208ENST00000548817 C4BP0C0L5 1744 aa12.06□□□□□ -0.48
TROAP-208ENST00000548817 TOGARAM1Q9Y4F4 1720 aa12.06□□□□□ -0.48
TROAP-208ENST00000548817 NEUROD1Q13562 356 aa12.06□□□□□ -0.48
TROAP-208ENST00000548817 PXDNLA1KZ92 1463 aa12.06□□□□□ -0.48
TROAP-208ENST00000548817 KIAA1551Q9HCM1 1747 aa12.06□□□□□ -0.48
TROAP-208ENST00000548817 TGFB2P61812 414 aa12.05□□□□□ -0.48
TROAP-208ENST00000548817 SMC1BQ8NDV3 1235 aa12.05□□□□□ -0.48
TROAP-208ENST00000548817 ZCRB1Q8TBF4 217 aaKnown RBP12.05□□□□□ -0.48
TROAP-208ENST00000548817 PKD1L3Q7Z443 1732 aa12.05□□□□□ -0.48
TROAP-208ENST00000548817 ROCK2O75116 1388 aaKnown RBP12.05□□□□□ -0.48
TROAP-208ENST00000548817 SSFA2P28290 1259 aa12.04□□□□□ -0.48
TROAP-208ENST00000548817 AK7Q96M32 723 aa12.04□□□□□ -0.48
TROAP-208ENST00000548817 CGNL1Q0VF96 1302 aa12.04□□□□□ -0.48
TROAP-208ENST00000548817 PALLDQ8WX93 1383 aa12.04□□□□□ -0.48
TROAP-208ENST00000548817 SIN3AQ96ST3 1273 aa12.03□□□□□ -0.48
TROAP-208ENST00000548817 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.02□□□□□ -0.49
TROAP-208ENST00000548817 ARHGAP27Q6ZUM4 889 aa12.02□□□□□ -0.49
TROAP-208ENST00000548817 IP6K1Q92551 441 aa12.02□□□□□ -0.49
TROAP-208ENST00000548817 BCS1LQ9Y276 419 aa12.02□□□□□ -0.49
TROAP-208ENST00000548817 ARFGEF1Q9Y6D6 1849 aa12.02□□□□□ -0.49
TROAP-208ENST00000548817 BRCA1P38398 1863 aaKnown RBP12.02□□□□□ -0.49
TROAP-208ENST00000548817 C9orf131Q5VYM1 1079 aa12.01□□□□□ -0.49
TROAP-208ENST00000548817 SMARCC1Q92922 1105 aaPredicted RBP12.01□□□□□ -0.49
TROAP-208ENST00000548817 ZC3H4Q9UPT8 1303 aaKnown RBP12.01□□□□□ -0.49
TROAP-208ENST00000548817 MEGF6O75095 1541 aa12.01□□□□□ -0.49
TROAP-208ENST00000548817 KCPQ6ZWJ8 1503 aa12.01□□□□□ -0.49
TROAP-208ENST00000548817 N4BP2Q86UW6 1770 aaPredicted RBP12□□□□□ -0.49
TROAP-208ENST00000548817 SBNO2Q9Y2G9 1366 aa12□□□□□ -0.49
TROAP-208ENST00000548817 HDGFL2Q7Z4V5 671 aaPredicted RBP11.99□□□□□ -0.49
TROAP-208ENST00000548817 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.99□□□□□ -0.49
TROAP-208ENST00000548817 TMC1Q8TDI8 760 aa11.99□□□□□ -0.49
TROAP-208ENST00000548817 FCHSD2O94868 740 aa11.98□□□□□ -0.49
TROAP-208ENST00000548817 PHF14O94880 888 aa11.98□□□□□ -0.49
TROAP-208ENST00000548817 MMP10P09238 476 aa11.98□□□□□ -0.49
TROAP-208ENST00000548817 AMIGO3Q86WK7 504 aa11.98□□□□□ -0.49
TROAP-208ENST00000548817 NME9Q86XW9 330 aa11.98□□□□□ -0.49
TROAP-208ENST00000548817 PRDM10Q9NQV6 1147 aa11.98□□□□□ -0.49
TROAP-208ENST00000548817 EDC4Q6P2E9 1401 aaKnown RBP11.97□□□□□ -0.49
TROAP-208ENST00000548817 CARD11Q9BXL7 1154 aa11.97□□□□□ -0.49
TROAP-208ENST00000548817 RRAGCQ9HB90 399 aa11.97□□□□□ -0.49
TROAP-208ENST00000548817 PCDH11XQ9BZA7 1347 aa11.96□□□□□ -0.49
TROAP-208ENST00000548817 PCDH11YQ9BZA8 1340 aa11.96□□□□□ -0.49
TROAP-208ENST00000548817 MAP2P11137 1827 aaKnown RBP11.96□□□□□ -0.49
TROAP-208ENST00000548817 A0A0G2JLW4 131 aa11.96□□□□□ -0.49
TROAP-208ENST00000548817 NLGN1Q8N2Q7 840 aa11.96□□□□□ -0.49
TROAP-208ENST00000548817 LTV1Q96GA3 475 aaPredicted RBP11.96□□□□□ -0.49
TROAP-208ENST00000548817 CCDC87Q9NVE4 849 aa11.96□□□□□ -0.49
TROAP-208ENST00000548817 CD163L1Q9NR16 1453 aa11.95□□□□□ -0.5
TROAP-208ENST00000548817 C4AP0C0L4 1744 aa11.95□□□□□ -0.5
TROAP-208ENST00000548817 RAPGEF4Q8WZA2 1011 aa11.95□□□□□ -0.5
TROAP-208ENST00000548817 DCAF5Q96JK2 942 aa11.95□□□□□ -0.5
TROAP-208ENST00000548817 TERF2IPQ9NYB0 399 aa11.95□□□□□ -0.5
TROAP-208ENST00000548817 RNF181Q9P0P0 153 aa11.95□□□□□ -0.5
TROAP-208ENST00000548817 ITGB4P16144 1822 aa11.95□□□□□ -0.5
TROAP-208ENST00000548817 RGPD2P0DJD1 1756 aa11.95□□□□□ -0.5
TROAP-208ENST00000548817 RTL1A6NKG5 1358 aa11.94□□□□□ -0.5
TROAP-208ENST00000548817 VEGFAP15692 232 aaPredicted RBP11.94□□□□□ -0.5
TROAP-208ENST00000548817 DPEP1P16444 411 aa11.94□□□□□ -0.5
TROAP-208ENST00000548817 MPRIPQ6WCQ1 1025 aa11.94□□□□□ -0.5
TROAP-208ENST00000548817 SBF1O95248 1867 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms