RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 AMOTQ4VCS5 1084 aa18.36■□□□□ 0.53
PTCH1-213ENST00000546820 FAM196AQ6ZSG2 479 aa18.36■□□□□ 0.53
PTCH1-213ENST00000546820 PARP4Q9UKK3 1724 aaKnown RBP18.36■□□□□ 0.53
PTCH1-213ENST00000546820 KDRP35968 1356 aa18.35■□□□□ 0.53
PTCH1-213ENST00000546820 PLEKHG2Q9H7P9 1386 aa18.35■□□□□ 0.53
PTCH1-213ENST00000546820 FCHSD2O94868 740 aa18.35■□□□□ 0.53
PTCH1-213ENST00000546820 AEBP1Q8IUX7 1158 aa18.35■□□□□ 0.53
PTCH1-213ENST00000546820 OVOS2A0A0G2JMS6 1433 aa18.34■□□□□ 0.53
PTCH1-213ENST00000546820 NEFMP07197 916 aa18.34■□□□□ 0.53
PTCH1-213ENST00000546820 WDR43Q15061 677 aaKnown RBP eCLIP18.34■□□□□ 0.53
PTCH1-213ENST00000546820 MEGF6O75095 1541 aa18.33■□□□□ 0.53
PTCH1-213ENST00000546820 BRWD3Q6RI45 1802 aa18.33■□□□□ 0.53
PTCH1-213ENST00000546820 MARCH10Q8NA82 808 aaPredicted RBP18.33■□□□□ 0.52
PTCH1-213ENST00000546820 WNK3Q9BYP7 1800 aa18.33■□□□□ 0.52
PTCH1-213ENST00000546820 TNS2Q63HR2 1409 aa18.32■□□□□ 0.52
PTCH1-213ENST00000546820 RGPD1P0DJD0 1748 aa18.32■□□□□ 0.52
PTCH1-213ENST00000546820 PCDH11XQ9BZA7 1347 aa18.32■□□□□ 0.52
PTCH1-213ENST00000546820 PCDH11YQ9BZA8 1340 aa18.32■□□□□ 0.52
PTCH1-213ENST00000546820 FAM182BQ5T319 152 aa18.31■□□□□ 0.52
PTCH1-213ENST00000546820 IFNL2Q8IZJ0 200 aa18.3■□□□□ 0.52
PTCH1-213ENST00000546820 MRS2Q9HD23 443 aa18.3■□□□□ 0.52
PTCH1-213ENST00000546820 LRRC37A3O60309 1634 aa18.3■□□□□ 0.52
PTCH1-213ENST00000546820 PRKAR2BP31323 418 aa18.29■□□□□ 0.52
PTCH1-213ENST00000546820 C1orf141Q5JVX7 400 aa18.29■□□□□ 0.52
PTCH1-213ENST00000546820 CCDC125Q86Z20 511 aa18.29■□□□□ 0.52
PTCH1-213ENST00000546820 RSPH6AQ9H0K4 717 aa18.29■□□□□ 0.52
PTCH1-213ENST00000546820 HSP90AB1P08238 724 aaKnown RBP18.28■□□□□ 0.52
PTCH1-213ENST00000546820 ZNF530Q6P9A1 599 aaPredicted RBP18.28■□□□□ 0.52
PTCH1-213ENST00000546820 CYP27B1O15528 508 aa18.27■□□□□ 0.52
PTCH1-213ENST00000546820 SF3B2Q13435 895 aaKnown RBP18.27■□□□□ 0.52
PTCH1-213ENST00000546820 GAS2L2Q8NHY3 880 aa18.27■□□□□ 0.52
PTCH1-213ENST00000546820 PHKG2P15735 406 aa18.26■□□□□ 0.51
PTCH1-213ENST00000546820 NKX1-1Q15270 411 aaPredicted RBP18.26■□□□□ 0.51
PTCH1-213ENST00000546820 BCL9O00512 1426 aa18.25■□□□□ 0.51
PTCH1-213ENST00000546820 CCDC184Q52MB2 194 aa18.25■□□□□ 0.51
PTCH1-213ENST00000546820 AKAP4Q5JQC9 854 aa18.25■□□□□ 0.51
PTCH1-213ENST00000546820 ADAMTS8Q9UP79 889 aa18.25■□□□□ 0.51
PTCH1-213ENST00000546820 MAPK8IP3Q9UPT6 1336 aa18.24■□□□□ 0.51
PTCH1-213ENST00000546820 MTHFSDQ2M296 383 aaKnown RBP18.24■□□□□ 0.51
PTCH1-213ENST00000546820 PHACTR3Q96KR7 559 aa18.24■□□□□ 0.51
PTCH1-213ENST00000546820 CCER2I3L3R5 266 aa18.23■□□□□ 0.51
PTCH1-213ENST00000546820 SOCS7O14512 581 aa18.23■□□□□ 0.51
PTCH1-213ENST00000546820 TRIM37O94972 964 aa18.23■□□□□ 0.51
PTCH1-213ENST00000546820 PNISRQ8TF01 805 aaKnown RBP18.23■□□□□ 0.51
PTCH1-213ENST00000546820 UPF1Q92900 1129 aaKnown RBP eCLIP18.23■□□□□ 0.51
PTCH1-213ENST00000546820 DCAF5Q96JK2 942 aa18.23■□□□□ 0.51
PTCH1-213ENST00000546820 BCL11BQ9C0K0 894 aaPredicted RBP18.23■□□□□ 0.51
PTCH1-213ENST00000546820 PKD1L3Q7Z443 1732 aa18.23■□□□□ 0.51
PTCH1-213ENST00000546820 RUNDC1Q96C34 613 aa18.22■□□□□ 0.51
PTCH1-213ENST00000546820 ACSBG1Q96GR2 724 aa18.22■□□□□ 0.51
PTCH1-213ENST00000546820 PLEKHF1Q96S99 279 aa18.22■□□□□ 0.51
PTCH1-213ENST00000546820 KAT6BQ8WYB5 2073 aa18.21■□□□□ 0.51
PTCH1-213ENST00000546820 GNAT3A8MTJ3 354 aa18.21■□□□□ 0.51
PTCH1-213ENST00000546820 SYTL4Q96C24 671 aaPredicted RBP18.21■□□□□ 0.51
PTCH1-213ENST00000546820 PRIM1P49642 420 aaKnown RBP18.2■□□□□ 0.5
PTCH1-213ENST00000546820 ERVV-2B6SEH9 535 aa18.19■□□□□ 0.5
PTCH1-213ENST00000546820 APBA3O96018 575 aa18.19■□□□□ 0.5
PTCH1-213ENST00000546820 MPRIPQ6WCQ1 1025 aa18.19■□□□□ 0.5
PTCH1-213ENST00000546820 MIER1Q8N108 512 aa18.19■□□□□ 0.5
PTCH1-213ENST00000546820 RTF1Q92541 710 aaKnown RBP18.19■□□□□ 0.5
PTCH1-213ENST00000546820 SHANK3Q9BYB0 1731 aa18.18■□□□□ 0.5
PTCH1-213ENST00000546820 KCNQ2O43526 872 aa18.18■□□□□ 0.5
PTCH1-213ENST00000546820 HTATSF1O43719 755 aaKnown RBP18.17■□□□□ 0.5
PTCH1-213ENST00000546820 BAG6P46379 1132 aa18.17■□□□□ 0.5
PTCH1-213ENST00000546820 CABP4P57796 275 aa18.17■□□□□ 0.5
PTCH1-213ENST00000546820 NFE2L2Q16236 605 aa18.17■□□□□ 0.5
PTCH1-213ENST00000546820 CCDC146Q8IYE0 955 aa18.17■□□□□ 0.5
PTCH1-213ENST00000546820 MAP3K5Q99683 1374 aa18.17■□□□□ 0.5
PTCH1-213ENST00000546820 RNMTO43148 476 aaKnown RBP18.16■□□□□ 0.5
PTCH1-213ENST00000546820 FAM9BQ8IZU0 186 aa18.16■□□□□ 0.5
PTCH1-213ENST00000546820 TMOD3Q9NYL9 352 aa18.16■□□□□ 0.5
PTCH1-213ENST00000546820 LGR6Q9HBX8 967 aa18.15■□□□□ 0.5
PTCH1-213ENST00000546820 PLSCR1O15162 318 aa18.14■□□□□ 0.49
PTCH1-213ENST00000546820 TMPOP42166 694 aaKnown RBP18.14■□□□□ 0.49
PTCH1-213ENST00000546820 RIPK4P57078 832 aa18.14■□□□□ 0.49
PTCH1-213ENST00000546820 SBF2Q86WG5 1849 aa18.14■□□□□ 0.49
PTCH1-213ENST00000546820 LMOD3Q0VAK6 560 aa18.13■□□□□ 0.49
PTCH1-213ENST00000546820 TEFQ10587 303 aa18.13■□□□□ 0.49
PTCH1-213ENST00000546820 PTF1AQ7RTS3 328 aa18.13■□□□□ 0.49
PTCH1-213ENST00000546820 NFATC2IPQ8NCF5 419 aa18.13■□□□□ 0.49
PTCH1-213ENST00000546820 IL17REQ8NFR9 667 aa18.12■□□□□ 0.49
PTCH1-213ENST00000546820 PIGBQ92521 554 aa18.12■□□□□ 0.49
PTCH1-213ENST00000546820 SMARCC1Q92922 1105 aaPredicted RBP18.12■□□□□ 0.49
PTCH1-213ENST00000546820 NEUROD2Q15784 382 aa18.11■□□□□ 0.49
PTCH1-213ENST00000546820 SLC52A2Q9HAB3 445 aa18.11■□□□□ 0.49
PTCH1-213ENST00000546820 NHSQ6T4R5 1651 aa18.1■□□□□ 0.49
PTCH1-213ENST00000546820 KDM6AO15550 1401 aaPredicted RBP18.1■□□□□ 0.49
PTCH1-213ENST00000546820 APAF1O14727 1248 aa18.1■□□□□ 0.49
PTCH1-213ENST00000546820 HMGB2P26583 209 aaKnown RBP18.1■□□□□ 0.49
PTCH1-213ENST00000546820 EN1Q05925 392 aaPredicted RBP18.1■□□□□ 0.49
PTCH1-213ENST00000546820 DOT1LQ8TEK3 1739 aa18.09■□□□□ 0.49
PTCH1-213ENST00000546820 MCM10Q7L590 875 aa18.09■□□□□ 0.49
PTCH1-213ENST00000546820 DEFB132Q7Z7B7 95 aa18.09■□□□□ 0.49
PTCH1-213ENST00000546820 RRP7AQ9Y3A4 280 aaKnown RBP18.09■□□□□ 0.49
PTCH1-213ENST00000546820 DCTN1Q14203 1278 aa18.07■□□□□ 0.48
PTCH1-213ENST00000546820 CAMKK2Q96RR4 588 aa18.07■□□□□ 0.48
PTCH1-213ENST00000546820 EP400Q96L91 3159 aa18.07■□□□□ 0.48
PTCH1-213ENST00000546820 SCN11AQ9UI33 1791 aa18.07■□□□□ 0.48
PTCH1-213ENST00000546820 CEMIPQ8WUJ3 1361 aa18.06■□□□□ 0.48
PTCH1-213ENST00000546820 TAF7Q15545 349 aaPredicted RBP18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms