RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 ROCK2O75116 1388 aaKnown RBP18.25■□□□□ 0.51
SCAF11-208ENST00000546534 MON2Q7Z3U7 1717 aa18.24■□□□□ 0.51
SCAF11-208ENST00000546534 IFFO2Q5TF58 517 aa18.24■□□□□ 0.51
SCAF11-208ENST00000546534 TFCP2L1Q9NZI6 479 aa18.24■□□□□ 0.51
SCAF11-208ENST00000546534 SBNO2Q9Y2G9 1366 aa18.24■□□□□ 0.51
SCAF11-208ENST00000546534 CD163L1Q9NR16 1453 aa18.22■□□□□ 0.51
SCAF11-208ENST00000546534 USP54Q70EL1 1684 aa18.22■□□□□ 0.51
SCAF11-208ENST00000546534 COL24A1Q17RW2 1714 aa18.21■□□□□ 0.51
SCAF11-208ENST00000546534 PRIM1P49642 420 aaKnown RBP18.21■□□□□ 0.51
SCAF11-208ENST00000546534 LTN1O94822 1766 aa18.21■□□□□ 0.51
SCAF11-208ENST00000546534 KAT6BQ8WYB5 2073 aa18.21■□□□□ 0.51
SCAF11-208ENST00000546534 QSER1Q2KHR3 1735 aa18.2■□□□□ 0.5
SCAF11-208ENST00000546534 SHANK3Q9BYB0 1731 aa18.2■□□□□ 0.5
SCAF11-208ENST00000546534 YBX3P16989 372 aaKnown RBP eCLIP18.2■□□□□ 0.51e-6■■□□□ 12
SCAF11-208ENST00000546534 SYTL4Q96C24 671 aaPredicted RBP18.2■□□□□ 0.5
SCAF11-208ENST00000546534 TMC1Q8TDI8 760 aa18.19■□□□□ 0.5
SCAF11-208ENST00000546534 SIN3AQ96ST3 1273 aa18.19■□□□□ 0.5
SCAF11-208ENST00000546534 GRIN3BO60391 1043 aa18.18■□□□□ 0.5
SCAF11-208ENST00000546534 HDGFL2Q7Z4V5 671 aaPredicted RBP18.18■□□□□ 0.5
SCAF11-208ENST00000546534 IP6K1Q92551 441 aa18.18■□□□□ 0.5
SCAF11-208ENST00000546534 LTV1Q96GA3 475 aaPredicted RBP18.18■□□□□ 0.5
SCAF11-208ENST00000546534 SLC12A5Q9H2X9 1139 aa18.18■□□□□ 0.5
SCAF11-208ENST00000546534 ANKRD36BQ8N2N9 1353 aa18.17■□□□□ 0.5
SCAF11-208ENST00000546534 TUBGCP6Q96RT7 1819 aa18.17■□□□□ 0.5
SCAF11-208ENST00000546534 NSD2O96028 1365 aa18.17■□□□□ 0.5
SCAF11-208ENST00000546534 EDC4Q6P2E9 1401 aaKnown RBP18.16■□□□□ 0.5
SCAF11-208ENST00000546534 COL23A1Q86Y22 540 aaPredicted RBP18.15■□□□□ 0.5
SCAF11-208ENST00000546534 CCNL1Q9UK58 526 aaPredicted RBP18.15■□□□□ 0.5
SCAF11-208ENST00000546534 NEUROD1Q13562 356 aa18.14■□□□□ 0.49
SCAF11-208ENST00000546534 MSL1Q68DK7 614 aa18.13■□□□□ 0.49
SCAF11-208ENST00000546534 ZCRB1Q8TBF4 217 aaKnown RBP18.13■□□□□ 0.49
SCAF11-208ENST00000546534 TERF2IPQ9NYB0 399 aa18.13■□□□□ 0.49
SCAF11-208ENST00000546534 A0A1W2PP64 1363 aa18.13■□□□□ 0.49
SCAF11-208ENST00000546534 ATP10DQ9P241 1426 aa18.13■□□□□ 0.49
SCAF11-208ENST00000546534 LY75O60449 1722 aa18.12■□□□□ 0.49
SCAF11-208ENST00000546534 DOT1LQ8TEK3 1739 aa18.12■□□□□ 0.49
SCAF11-208ENST00000546534 GOLGB1Q14789 3259 aaKnown RBP18.11■□□□□ 0.49
SCAF11-208ENST00000546534 MAP3K19Q56UN5 1328 aa18.11■□□□□ 0.49
SCAF11-208ENST00000546534 FAM208AQ9UK61 1670 aaKnown RBP18.1■□□□□ 0.49
SCAF11-208ENST00000546534 FBLN1P23142 703 aa18.1■□□□□ 0.49
SCAF11-208ENST00000546534 HOXC9P31274 260 aa18.1■□□□□ 0.49
SCAF11-208ENST00000546534 CARD11Q9BXL7 1154 aa18.1■□□□□ 0.49
SCAF11-208ENST00000546534 MEGF6O75095 1541 aa18.09■□□□□ 0.49
SCAF11-208ENST00000546534 USP47Q96K76 1375 aa18.09■□□□□ 0.49
SCAF11-208ENST00000546534 AMPHP49418 695 aa18.08■□□□□ 0.48
SCAF11-208ENST00000546534 GPBP1L1Q9HC44 474 aaPredicted RBP18.08■□□□□ 0.48
SCAF11-208ENST00000546534 DSG3P32926 999 aa18.07■□□□□ 0.48
SCAF11-208ENST00000546534 CD2APQ9Y5K6 639 aa18.07■□□□□ 0.48
SCAF11-208ENST00000546534 COG3Q96JB2 828 aa18.06■□□□□ 0.48
SCAF11-208ENST00000546534 CEP350Q5VT06 3117 aa18.06■□□□□ 0.48
SCAF11-208ENST00000546534 PUS7Q96PZ0 661 aaKnown RBP18.05■□□□□ 0.48
SCAF11-208ENST00000546534 ADCY9O60503 1353 aa18.04■□□□□ 0.48
SCAF11-208ENST00000546534 HSPA6P17066 643 aa18.04■□□□□ 0.48
SCAF11-208ENST00000546534 NBPF6Q5VWK0 638 aa18.04■□□□□ 0.48
SCAF11-208ENST00000546534 USHBP1Q8N6Y0 703 aa18.04■□□□□ 0.48
SCAF11-208ENST00000546534 ZNF526Q8TF50 670 aaPredicted RBP18.04■□□□□ 0.48
SCAF11-208ENST00000546534 NBPF4Q96M43 638 aa18.04■□□□□ 0.48
SCAF11-208ENST00000546534 RGPD2P0DJD1 1756 aa18.04■□□□□ 0.48
SCAF11-208ENST00000546534 FLAD1Q8NFF5 587 aa18.03■□□□□ 0.48
SCAF11-208ENST00000546534 CGNL1Q0VF96 1302 aa18.01■□□□□ 0.47
SCAF11-208ENST00000546534 RRS1Q15050 365 aaKnown RBP18.01■□□□□ 0.47
SCAF11-208ENST00000546534 RAPGEF4Q8WZA2 1011 aa18.01■□□□□ 0.47
SCAF11-208ENST00000546534 PALLDQ8WX93 1383 aa18.01■□□□□ 0.47
SCAF11-208ENST00000546534 C5P01031 1676 aa18■□□□□ 0.47
SCAF11-208ENST00000546534 RTL1A6NKG5 1358 aa18■□□□□ 0.47
SCAF11-208ENST00000546534 TATP17735 454 aaPredicted RBP17.99■□□□□ 0.47
SCAF11-208ENST00000546534 POLA2Q14181 598 aa17.99■□□□□ 0.47
SCAF11-208ENST00000546534 AMIGO3Q86WK7 504 aa17.99■□□□□ 0.47
SCAF11-208ENST00000546534 WWC3Q9ULE0 1092 aa17.99■□□□□ 0.47
SCAF11-208ENST00000546534 HMGB2P26583 209 aaKnown RBP17.98■□□□□ 0.47
SCAF11-208ENST00000546534 MPRIPQ6WCQ1 1025 aa17.98■□□□□ 0.47
SCAF11-208ENST00000546534 SMIM5Q71RC9 77 aa17.98■□□□□ 0.47
SCAF11-208ENST00000546534 IGSF1Q8N6C5 1336 aa17.98■□□□□ 0.47
SCAF11-208ENST00000546534 PCDH11XQ9BZA7 1347 aa17.98■□□□□ 0.47
SCAF11-208ENST00000546534 PCDH11YQ9BZA8 1340 aa17.98■□□□□ 0.47
SCAF11-208ENST00000546534 AK7Q96M32 723 aa17.97■□□□□ 0.47
SCAF11-208ENST00000546534 TESK2Q96S53 571 aa17.97■□□□□ 0.47
SCAF11-208ENST00000546534 PHF14O94880 888 aa17.96■□□□□ 0.47
SCAF11-208ENST00000546534 FYB1O15117 783 aa17.95■□□□□ 0.46
SCAF11-208ENST00000546534 CYP27B1O15528 508 aa17.95■□□□□ 0.46
SCAF11-208ENST00000546534 GGNBP2Q9H3C7 697 aa17.95■□□□□ 0.46
SCAF11-208ENST00000546534 SMG6Q86US8 1419 aaKnown RBP17.95■□□□□ 0.46
SCAF11-208ENST00000546534 TAF1LQ8IZX4 1826 aa17.95■□□□□ 0.46
SCAF11-208ENST00000546534 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.94■□□□□ 0.46
SCAF11-208ENST00000546534 KIF3CO14782 793 aa17.94■□□□□ 0.46
SCAF11-208ENST00000546534 HSP90AB2PQ58FF8 381 aa17.94■□□□□ 0.46
SCAF11-208ENST00000546534 SMARCC1Q92922 1105 aaPredicted RBP17.94■□□□□ 0.46
SCAF11-208ENST00000546534 C4BP0C0L5 1744 aa17.94■□□□□ 0.46
SCAF11-208ENST00000546534 ST20-MTHFSA0A0A6YYL1 179 aa17.93■□□□□ 0.46
SCAF11-208ENST00000546534 INSRP06213 1382 aa17.92■□□□□ 0.46
SCAF11-208ENST00000546534 TOGARAM1Q9Y4F4 1720 aa17.92■□□□□ 0.46
SCAF11-208ENST00000546534 ABCB7O75027 752 aa17.92■□□□□ 0.46
SCAF11-208ENST00000546534 PIGBQ92521 554 aa17.92■□□□□ 0.46
SCAF11-208ENST00000546534 NSD3Q9BZ95 1437 aa17.9■□□□□ 0.46
SCAF11-208ENST00000546534 SSFA2P28290 1259 aa17.9■□□□□ 0.46
SCAF11-208ENST00000546534 UBR3Q6ZT12 1888 aa17.89■□□□□ 0.45
SCAF11-208ENST00000546534 LINC00116Q8NCU8 138 aa17.89■□□□□ 0.45
SCAF11-208ENST00000546534 FLT4P35916 1363 aa17.89■□□□□ 0.45
SCAF11-208ENST00000546534 LOC102724428A0A0B4J2F2 783 aa17.88■□□□□ 0.45
SCAF11-208ENST00000546534 SIK1P57059 783 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms