RNA–Protein interactions for RNA: ENST00000546073.5

CD9-211, Transcript of CD9 molecule, humanhuman

TSL 2

Gene CD9, Length 1,072 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD9-211ENST00000546073 AMOTQ4VCS5 1084 aa23.39■■□□□ 1.33
CD9-211ENST00000546073 PARD3Q8TEW0 1356 aa23.39■■□□□ 1.33
CD9-211ENST00000546073 MARCH10Q8NA82 808 aaPredicted RBP23.38■■□□□ 1.33
CD9-211ENST00000546073 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.38■■□□□ 1.33
CD9-211ENST00000546073 MYBBP1AQ9BQG0 1328 aaKnown RBP23.37■■□□□ 1.33
CD9-211ENST00000546073 TRIM37O94972 964 aa23.37■■□□□ 1.33
CD9-211ENST00000546073 PARP4Q9UKK3 1724 aaKnown RBP23.36■■□□□ 1.33
CD9-211ENST00000546073 PNNQ9H307 717 aaKnown RBP23.36■■□□□ 1.33
CD9-211ENST00000546073 APBA3O96018 575 aa23.34■■□□□ 1.33
CD9-211ENST00000546073 U2AF1L5P0DN76 240 aaPredicted RBP23.34■■□□□ 1.33
CD9-211ENST00000546073 U2AF1Q01081 240 aaKnown RBP eCLIP23.34■■□□□ 1.33
CD9-211ENST00000546073 C1orf141Q5JVX7 400 aa23.34■■□□□ 1.33
CD9-211ENST00000546073 PLEKHG2Q9H7P9 1386 aa23.34■■□□□ 1.33
CD9-211ENST00000546073 HSP90AB1P08238 724 aaKnown RBP23.33■■□□□ 1.33
CD9-211ENST00000546073 HMOX1P09601 288 aa23.33■■□□□ 1.33
CD9-211ENST00000546073 IFNL2Q8IZJ0 200 aa23.33■■□□□ 1.33
CD9-211ENST00000546073 SYTL4Q96C24 671 aaPredicted RBP23.33■■□□□ 1.33
CD9-211ENST00000546073 BRWD3Q6RI45 1802 aa23.32■■□□□ 1.32
CD9-211ENST00000546073 BCL11BQ9C0K0 894 aaPredicted RBP23.32■■□□□ 1.32
CD9-211ENST00000546073 PRKRIP1Q9H875 184 aaPredicted RBP23.32■■□□□ 1.32
CD9-211ENST00000546073 LRRC37A3O60309 1634 aa23.31■■□□□ 1.32
CD9-211ENST00000546073 MEGF6O75095 1541 aa23.31■■□□□ 1.32
CD9-211ENST00000546073 ZNF530Q6P9A1 599 aaPredicted RBP23.29■■□□□ 1.32
CD9-211ENST00000546073 ACSBG1Q96GR2 724 aa23.29■■□□□ 1.32
CD9-211ENST00000546073 BCL9O00512 1426 aa23.28■■□□□ 1.32
CD9-211ENST00000546073 WDR43Q15061 677 aaKnown RBP eCLIP23.28■■□□□ 1.32
CD9-211ENST00000546073 AEBP1Q8IUX7 1158 aa23.28■■□□□ 1.32
CD9-211ENST00000546073 NCAPD2Q15021 1401 aa23.27■■□□□ 1.32
CD9-211ENST00000546073 WNK3Q9BYP7 1800 aa23.26■■□□□ 1.31
CD9-211ENST00000546073 FCHSD2O94868 740 aa23.26■■□□□ 1.31
CD9-211ENST00000546073 HMGB2P26583 209 aaKnown RBP23.26■■□□□ 1.31
CD9-211ENST00000546073 KDRP35968 1356 aa23.25■■□□□ 1.31
CD9-211ENST00000546073 RGPD2P0DJD1 1756 aa23.24■■□□□ 1.31
CD9-211ENST00000546073 PHKG2P15735 406 aa23.24■■□□□ 1.31
CD9-211ENST00000546073 GAS2L2Q8NHY3 880 aa23.24■■□□□ 1.31
CD9-211ENST00000546073 PRIM1P49642 420 aaKnown RBP23.23■■□□□ 1.31
CD9-211ENST00000546073 CYP27B1O15528 508 aa23.22■■□□□ 1.31
CD9-211ENST00000546073 PRKAR2BP31323 418 aa23.22■■□□□ 1.31
CD9-211ENST00000546073 EN1Q05925 392 aaPredicted RBP23.22■■□□□ 1.31
CD9-211ENST00000546073 DEFB132Q7Z7B7 95 aa23.22■■□□□ 1.31
CD9-211ENST00000546073 DCAF5Q96JK2 942 aa23.22■■□□□ 1.31
CD9-211ENST00000546073 AKAP4Q5JQC9 854 aa23.21■■□□□ 1.31
CD9-211ENST00000546073 MAPK8IP3Q9UPT6 1336 aa23.21■■□□□ 1.31
CD9-211ENST00000546073 NKX1-1Q15270 411 aaPredicted RBP23.2■■□□□ 1.3
CD9-211ENST00000546073 TMOD3Q9NYL9 352 aa23.2■■□□□ 1.3
CD9-211ENST00000546073 COL3A1P02461 1466 aaPredicted RBP23.19■■□□□ 1.3
CD9-211ENST00000546073 PLSCR1O15162 318 aa23.19■■□□□ 1.3
CD9-211ENST00000546073 KCNQ2O43526 872 aa23.19■■□□□ 1.3
CD9-211ENST00000546073 CABP4P57796 275 aa23.19■■□□□ 1.3
CD9-211ENST00000546073 NBPF14Q5TI25 921 aa23.19■■□□□ 1.3
CD9-211ENST00000546073 MPRIPQ6WCQ1 1025 aa23.19■■□□□ 1.3
CD9-211ENST00000546073 RTF1Q92541 710 aaKnown RBP23.18■■□□□ 1.3
CD9-211ENST00000546073 RGPD1P0DJD0 1748 aa23.18■■□□□ 1.3
CD9-211ENST00000546073 ERVV-2B6SEH9 535 aa23.17■■□□□ 1.3
CD9-211ENST00000546073 SMARCC1Q92922 1105 aaPredicted RBP23.17■■□□□ 1.3
CD9-211ENST00000546073 RSPH6AQ9H0K4 717 aa23.17■■□□□ 1.3
CD9-211ENST00000546073 EZH2Q15910 746 aaKnown RBP23.15■■□□□ 1.3
CD9-211ENST00000546073 MTHFSDQ2M296 383 aaKnown RBP23.15■■□□□ 1.3
CD9-211ENST00000546073 GNAT3A8MTJ3 354 aa23.14■■□□□ 1.29
CD9-211ENST00000546073 CAMKK2Q96RR4 588 aa23.13■■□□□ 1.29
CD9-211ENST00000546073 MRS2Q9HD23 443 aa23.12■■□□□ 1.29
CD9-211ENST00000546073 TEFQ10587 303 aa23.1■■□□□ 1.29
CD9-211ENST00000546073 SLC27A3Q5K4L6 730 aa23.1■■□□□ 1.29
CD9-211ENST00000546073 PKD1L3Q7Z443 1732 aa23.1■■□□□ 1.29
CD9-211ENST00000546073 TXNRD1Q16881 649 aa23.09■■□□□ 1.29
CD9-211ENST00000546073 PTF1AQ7RTS3 328 aa23.08■■□□□ 1.29
CD9-211ENST00000546073 MAP3K5Q99683 1374 aa23.08■■□□□ 1.29
CD9-211ENST00000546073 KAT6BQ8WYB5 2073 aa23.08■■□□□ 1.29
CD9-211ENST00000546073 RNMTO43148 476 aaKnown RBP23.07■■□□□ 1.28
CD9-211ENST00000546073 HTATSF1O43719 755 aaKnown RBP23.07■■□□□ 1.28
CD9-211ENST00000546073 LMOD3Q0VAK6 560 aa23.07■■□□□ 1.28
CD9-211ENST00000546073 PIGBQ92521 554 aa23.07■■□□□ 1.28
CD9-211ENST00000546073 PHACTR3Q96KR7 559 aa23.07■■□□□ 1.28
CD9-211ENST00000546073 STK32BQ9NY57 414 aa23.06■■□□□ 1.28
CD9-211ENST00000546073 NHSQ6T4R5 1651 aa23.06■■□□□ 1.28
CD9-211ENST00000546073 NFATC2IPQ8NCF5 419 aa23.05■■□□□ 1.28
CD9-211ENST00000546073 RUNDC1Q96C34 613 aa23.05■■□□□ 1.28
CD9-211ENST00000546073 CCNL1Q9UK58 526 aaPredicted RBP23.05■■□□□ 1.28
CD9-211ENST00000546073 EP400Q96L91 3159 aa23.04■■□□□ 1.28
CD9-211ENST00000546073 SLC52A2Q9HAB3 445 aa23.04■■□□□ 1.28
CD9-211ENST00000546073 ADAMTS8Q9UP79 889 aa23.04■■□□□ 1.28
CD9-211ENST00000546073 NFE2L2Q16236 605 aa23.03■■□□□ 1.28
CD9-211ENST00000546073 DIEXFQ68CQ4 756 aaKnown RBP23.03■■□□□ 1.28
CD9-211ENST00000546073 TTC5Q8N0Z6 440 aa23.03■■□□□ 1.28
CD9-211ENST00000546073 PALLDQ8WX93 1383 aa23.02■■□□□ 1.28
CD9-211ENST00000546073 LGR6Q9HBX8 967 aa23.02■■□□□ 1.28
CD9-211ENST00000546073 PLEKHF1Q96S99 279 aa23.01■■□□□ 1.27
CD9-211ENST00000546073 RBM42Q9BTD8 480 aaKnown RBP23.01■■□□□ 1.27
CD9-211ENST00000546073 TNS1Q9HBL0 1735 aaKnown RBP23.01■■□□□ 1.27
CD9-211ENST00000546073 SBF2Q86WG5 1849 aa23.01■■□□□ 1.27
CD9-211ENST00000546073 DOT1LQ8TEK3 1739 aa23■■□□□ 1.27
CD9-211ENST00000546073 SHANK3Q9BYB0 1731 aa23■■□□□ 1.27
CD9-211ENST00000546073 RIPK4P57078 832 aa23■■□□□ 1.27
CD9-211ENST00000546073 CCDC146Q8IYE0 955 aa23■■□□□ 1.27
CD9-211ENST00000546073 ASAP1Q9ULH1 1129 aa22.98■■□□□ 1.27
CD9-211ENST00000546073 KDM6AO15550 1401 aaPredicted RBP22.98■■□□□ 1.27
CD9-211ENST00000546073 LOC102724428A0A0B4J2F2 783 aa22.97■■□□□ 1.27
CD9-211ENST00000546073 ATP6V1AP38606 617 aa22.97■■□□□ 1.27
CD9-211ENST00000546073 SIK1P57059 783 aa22.97■■□□□ 1.27
CD9-211ENST00000546073 NEUROD2Q15784 382 aa22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms