RNA–Protein interactions for RNA: ENST00000545913.5

CIT-217, Transcript of citron rho-interacting serine/threonine kinase, human

TSL 5

Gene CIT, Length 8,520 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CIT-217	ENST00000545913	WASF1	Q92558	559 aa		13.79	□□□□□ -0.2
CIT-217	ENST00000545913	SLC12A5	Q9H2X9	1139 aa		13.79	□□□□□ -0.2
CIT-217	ENST00000545913	BMP2K	Q9NSY1	1161 aa	Predicted RBP	13.79	□□□□□ -0.2
CIT-217	ENST00000545913	PDCL3	Q9H2J4	239 aa		13.79	□□□□□ -0.2
CIT-217	ENST00000545913	CABP1	Q9NZU7	370 aa		13.79	□□□□□ -0.2
CIT-217	ENST00000545913	UBAC1	Q9BSL1	405 aa		13.79	□□□□□ -0.2
CIT-217	ENST00000545913	RPGRIP1L	Q68CZ1	1315 aa		13.79	□□□□□ -0.2
CIT-217	ENST00000545913	EIF3J	O75822	258 aa	Known RBP	13.79	□□□□□ -0.2
CIT-217	ENST00000545913	SRGAP3	O43295	1099 aa		13.79	□□□□□ -0.2
CIT-217	ENST00000545913	DES	P17661	470 aa		13.79	□□□□□ -0.2
CIT-217	ENST00000545913	TDO2	P48775	406 aa		13.79	□□□□□ -0.2
CIT-217	ENST00000545913	ZSCAN31	Q96LW9	406 aa	Predicted RBP	13.78	□□□□□ -0.2
CIT-217	ENST00000545913	BCAR3	O75815	825 aa		13.78	□□□□□ -0.2
CIT-217	ENST00000545913	TANGO6	Q9C0B7	1094 aa		13.78	□□□□□ -0.2
CIT-217	ENST00000545913	ITSN2	Q9NZM3	1697 aa		13.78	□□□□□ -0.2
CIT-217	ENST00000545913	ERLIN1	O75477	346 aa		13.78	□□□□□ -0.2
CIT-217	ENST00000545913	SPATA32	Q96LK8	384 aa		13.78	□□□□□ -0.2
CIT-217	ENST00000545913	CIZ1	Q9ULV3	898 aa	Predicted RBP	13.78	□□□□□ -0.2
CIT-217	ENST00000545913	ZHX3	Q9H4I2	956 aa		13.77	□□□□□ -0.2
CIT-217	ENST00000545913	NUP133	Q8WUM0	1156 aa		13.77	□□□□□ -0.2
CIT-217	ENST00000545913	TSPYL1	Q9H0U9	437 aa		13.77	□□□□□ -0.2
CIT-217	ENST00000545913	GOLGA6L7	A0A1B0GV03	622 aa		13.77	□□□□□ -0.2
CIT-217	ENST00000545913	CEP131	Q9UPN4	1083 aa		13.77	□□□□□ -0.2
CIT-217	ENST00000545913	PCF11	O94913	1555 aa	Known RBP	13.77	□□□□□ -0.2
CIT-217	ENST00000545913	SF3B2	Q13435	895 aa	Known RBP	13.77	□□□□□ -0.21
CIT-217	ENST00000545913	ZNF287	Q9HBT7	754 aa		13.77	□□□□□ -0.21
CIT-217	ENST00000545913	SKIDA1	Q1XH10	827 aa		13.77	□□□□□ -0.21
CIT-217	ENST00000545913	CEP57L1	Q8IYX8	460 aa		13.77	□□□□□ -0.21
CIT-217	ENST00000545913	HMGXB3	Q12766	1538 aa		13.76	□□□□□ -0.21
CIT-217	ENST00000545913	FCHSD2	O94868	740 aa		13.76	□□□□□ -0.21
CIT-217	ENST00000545913	DDX54	Q8TDD1	881 aa	Known RBP	13.76	□□□□□ -0.21
CIT-217	ENST00000545913	PDRG1	Q9NUG6	133 aa		13.76	□□□□□ -0.21
CIT-217	ENST00000545913	PPP6R1	Q9UPN7	881 aa		13.76	□□□□□ -0.21
CIT-217	ENST00000545913	TOPBP1	Q92547	1522 aa		13.76	□□□□□ -0.21
CIT-217	ENST00000545913	NBPF1	Q3BBV0	1214 aa		13.76	□□□□□ -0.21
CIT-217	ENST00000545913	BACH2	Q9BYV9	841 aa		13.76	□□□□□ -0.21
CIT-217	ENST00000545913	SMTNL1	A8MU46	457 aa		13.76	□□□□□ -0.21
CIT-217	ENST00000545913	KIAA0754	O94854	1291 aa		13.76	□□□□□ -0.21
CIT-217	ENST00000545913	CCDC112	Q8NEF3	446 aa		13.76	□□□□□ -0.21
CIT-217	ENST00000545913	CEP126	Q9P2H0	1117 aa		13.76	□□□□□ -0.21
CIT-217	ENST00000545913	NSD3	Q9BZ95	1437 aa		13.75	□□□□□ -0.21
CIT-217	ENST00000545913	TRIM21	P19474	475 aa	Known RBP	13.75	□□□□□ -0.21
CIT-217	ENST00000545913	RBM5	P52756	815 aa	Known RBP eCLIP	13.75	□□□□□ -0.21
CIT-217	ENST00000545913	CWC27	Q6UX04	472 aa	Known RBP	13.75	□□□□□ -0.21
CIT-217	ENST00000545913	GNAT3	A8MTJ3	354 aa		13.75	□□□□□ -0.21
CIT-217	ENST00000545913	MAP4K4	O95819	1239 aa	Predicted RBP	13.75	□□□□□ -0.21
CIT-217	ENST00000545913	ENOX2	Q16206	610 aa	Known RBP	13.74	□□□□□ -0.21
CIT-217	ENST00000545913	NUP62CL	Q9H1M0	184 aa		13.74	□□□□□ -0.21
CIT-217	ENST00000545913	GBP2	P32456	591 aa	Predicted RBP	13.74	□□□□□ -0.21
CIT-217	ENST00000545913		U3KPZ7	1027 aa	Predicted RBP	13.74	□□□□□ -0.21
CIT-217	ENST00000545913	IMMT	Q16891	758 aa	Known RBP	13.74	□□□□□ -0.21
CIT-217	ENST00000545913	GRPEL1	Q9HAV7	217 aa		13.74	□□□□□ -0.21
CIT-217	ENST00000545913	ZNF397	Q8NF99	534 aa	Predicted RBP	13.74	□□□□□ -0.21
CIT-217	ENST00000545913	JAKMIP1	Q96N16	626 aa	Known RBP	13.74	□□□□□ -0.21
CIT-217	ENST00000545913	STARD3NL	O95772	234 aa		13.74	□□□□□ -0.21
CIT-217	ENST00000545913	LRP2BP	Q9P2M1	347 aa		13.74	□□□□□ -0.21
CIT-217	ENST00000545913	NKTR	P30414	1462 aa	Known RBP	13.74	□□□□□ -0.21
CIT-217	ENST00000545913	RAB11FIP3	O75154	756 aa		13.74	□□□□□ -0.21
CIT-217	ENST00000545913	IGHMBP2	P38935	993 aa	Known RBP	13.73	□□□□□ -0.21
CIT-217	ENST00000545913	ANKLE2	Q86XL3	938 aa		13.73	□□□□□ -0.21
CIT-217	ENST00000545913	SNAPC4	Q5SXM2	1469 aa		13.73	□□□□□ -0.21
CIT-217	ENST00000545913	STK11IP	Q8N1F8	1099 aa		13.73	□□□□□ -0.21
CIT-217	ENST00000545913	ZNF652	Q9Y2D9	606 aa		13.73	□□□□□ -0.21
CIT-217	ENST00000545913	CAST	P20810	708 aa	Known RBP	13.73	□□□□□ -0.21
CIT-217	ENST00000545913	PRDM11	Q9NQV5	511 aa		13.73	□□□□□ -0.21
CIT-217	ENST00000545913	UPF3B	Q9BZI7	483 aa	Known RBP	13.73	□□□□□ -0.21
CIT-217	ENST00000545913	AKAP2	Q9Y2D5	859 aa		13.73	□□□□□ -0.21
CIT-217	ENST00000545913	PPP1R12B	O60237	982 aa	Predicted RBP	13.72	□□□□□ -0.21
CIT-217	ENST00000545913	NFE2L2	Q16236	605 aa		13.72	□□□□□ -0.21
CIT-217	ENST00000545913	RPAP2	Q8IXW5	612 aa	Predicted RBP	13.72	□□□□□ -0.21
CIT-217	ENST00000545913	PLEKHH1	Q9ULM0	1364 aa		13.72	□□□□□ -0.21
CIT-217	ENST00000545913	EZR	P15311	586 aa	Known RBP	13.72	□□□□□ -0.21
CIT-217	ENST00000545913	KCNH5	Q8NCM2	988 aa		13.71	□□□□□ -0.21
CIT-217	ENST00000545913	KIF1BP	Q96EK5	621 aa		13.71	□□□□□ -0.21
CIT-217	ENST00000545913	SEC63	Q9UGP8	760 aa	Known RBP	13.71	□□□□□ -0.21
CIT-217	ENST00000545913	ZNF76	P36508	570 aa		13.71	□□□□□ -0.21
CIT-217	ENST00000545913	KIAA1328	Q86T90	577 aa		13.71	□□□□□ -0.21
CIT-217	ENST00000545913	AIDA	Q96BJ3	306 aa		13.71	□□□□□ -0.21
CIT-217	ENST00000545913	EPB41L2	O43491	1005 aa	Known RBP	13.71	□□□□□ -0.21
CIT-217	ENST00000545913	PPP1R1B	Q9UD71	204 aa	Predicted RBP	13.71	□□□□□ -0.21
CIT-217	ENST00000545913	MAP3K11	Q16584	847 aa		13.71	□□□□□ -0.22
CIT-217	ENST00000545913	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	13.71	□□□□□ -0.22
CIT-217	ENST00000545913	DNAI2	Q9GZS0	605 aa		13.71	□□□□□ -0.22
CIT-217	ENST00000545913	RRS1	Q15050	365 aa	Known RBP	13.7	□□□□□ -0.22
CIT-217	ENST00000545913	FAM177A1	Q8N128	213 aa	Predicted RBP	13.7	□□□□□ -0.22
CIT-217	ENST00000545913	JAKMIP3	Q5VZ66	844 aa		13.7	□□□□□ -0.22
CIT-217	ENST00000545913	CENPH	Q9H3R5	247 aa		13.7	□□□□□ -0.22
CIT-217	ENST00000545913	CTTNBP2	Q8WZ74	1663 aa		13.7	□□□□□ -0.22
CIT-217	ENST00000545913	MATR3	P43243	847 aa	Known RBP eCLIP	13.7	□□□□□ -0.22	2e-8	■■■■■ 28.8
CIT-217	ENST00000545913	TMPO	P42166	694 aa	Known RBP	13.7	□□□□□ -0.22
CIT-217	ENST00000545913	SEPT11	Q9NVA2	429 aa	Known RBP	13.7	□□□□□ -0.22
CIT-217	ENST00000545913	CCDC196	A0A1B0GTZ2	297 aa		13.7	□□□□□ -0.22
CIT-217	ENST00000545913	ANKRD62	A6NC57	917 aa		13.7	□□□□□ -0.22
CIT-217	ENST00000545913	RAI14	Q9P0K7	980 aa		13.7	□□□□□ -0.22
CIT-217	ENST00000545913	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	13.7	□□□□□ -0.22
CIT-217	ENST00000545913	CAMSAP2	Q08AD1	1489 aa		13.7	□□□□□ -0.22
CIT-217	ENST00000545913	CDK13	Q14004	1512 aa	Known RBP	13.7	□□□□□ -0.22
CIT-217	ENST00000545913	GLRX3	O76003	335 aa	Known RBP	13.7	□□□□□ -0.22
CIT-217	ENST00000545913	LRRFIP2	Q9Y608	721 aa	Known RBP	13.7	□□□□□ -0.22
CIT-217	ENST00000545913	MPHOSPH10	O00566	681 aa	Known RBP	13.69	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms