RNA–Protein interactions for RNA: ENST00000544738.5

DDX55-212, Transcript of DEAD-box helicase 55, humanhuman

TSL 5

Gene DDX55, Length 956 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-212ENST00000544738 ST20-MTHFSA0A0A6YYL1 179 aa22.78■■□□□ 1.24
DDX55-212ENST00000544738 MSL1Q68DK7 614 aa22.78■■□□□ 1.24
DDX55-212ENST00000544738 MON2Q7Z3U7 1717 aa22.78■■□□□ 1.24
DDX55-212ENST00000544738 SLC12A5Q9H2X9 1139 aa22.78■■□□□ 1.24
DDX55-212ENST00000544738 COL23A1Q86Y22 540 aaPredicted RBP22.77■■□□□ 1.24
DDX55-212ENST00000544738 TESK2Q96S53 571 aa22.77■■□□□ 1.24
DDX55-212ENST00000544738 USP31Q70CQ4 1352 aa22.76■■□□□ 1.23
DDX55-212ENST00000544738 TIMELESSQ9UNS1 1208 aa22.76■■□□□ 1.23
DDX55-212ENST00000544738 CD163L1Q9NR16 1453 aa22.76■■□□□ 1.23
DDX55-212ENST00000544738 NME9Q86XW9 330 aa22.75■■□□□ 1.23
DDX55-212ENST00000544738 CCNL1Q9UK58 526 aaPredicted RBP22.75■■□□□ 1.23
DDX55-212ENST00000544738 LTV1Q96GA3 475 aaPredicted RBP22.74■■□□□ 1.23
DDX55-212ENST00000544738 EDC4Q6P2E9 1401 aaKnown RBP22.74■■□□□ 1.23
DDX55-212ENST00000544738 CLSPNQ9HAW4 1339 aa22.73■■□□□ 1.23
DDX55-212ENST00000544738 CD2APQ9Y5K6 639 aa22.71■■□□□ 1.23
DDX55-212ENST00000544738 A0A1W2PP64 1363 aa22.71■■□□□ 1.23
DDX55-212ENST00000544738 WWC3Q9ULE0 1092 aa22.7■■□□□ 1.22
DDX55-212ENST00000544738 COL24A1Q17RW2 1714 aa22.7■■□□□ 1.22
DDX55-212ENST00000544738 QSER1Q2KHR3 1735 aa22.7■■□□□ 1.22
DDX55-212ENST00000544738 USP54Q70EL1 1684 aa22.69■■□□□ 1.22
DDX55-212ENST00000544738 ANKRD36BQ8N2N9 1353 aa22.68■■□□□ 1.22
DDX55-212ENST00000544738 TMF1P82094 1093 aa22.68■■□□□ 1.22
DDX55-212ENST00000544738 PCGF6Q9BYE7 350 aa22.68■■□□□ 1.22
DDX55-212ENST00000544738 USP47Q96K76 1375 aa22.67■■□□□ 1.22
DDX55-212ENST00000544738 IP6K1Q92551 441 aa22.66■■□□□ 1.22
DDX55-212ENST00000544738 TUBGCP6Q96RT7 1819 aa22.66■■□□□ 1.22
DDX55-212ENST00000544738 ZCRB1Q8TBF4 217 aaKnown RBP22.65■■□□□ 1.22
DDX55-212ENST00000544738 ADCY9O60503 1353 aa22.64■■□□□ 1.22
DDX55-212ENST00000544738 CDCA8Q53HL2 280 aa22.64■■□□□ 1.21
DDX55-212ENST00000544738 NSD2O96028 1365 aa22.63■■□□□ 1.21
DDX55-212ENST00000544738 KIF3CO14782 793 aa22.62■■□□□ 1.21
DDX55-212ENST00000544738 APLP1P51693 650 aa22.61■■□□□ 1.21
DDX55-212ENST00000544738 FLAD1Q8NFF5 587 aa22.61■■□□□ 1.21
DDX55-212ENST00000544738 COG3Q96JB2 828 aa22.61■■□□□ 1.21
DDX55-212ENST00000544738 LTN1O94822 1766 aa22.6■■□□□ 1.21
DDX55-212ENST00000544738 IGSF1Q8N6C5 1336 aa22.59■■□□□ 1.21
DDX55-212ENST00000544738 AMPHP49418 695 aa22.56■■□□□ 1.2
DDX55-212ENST00000544738 DNAJC5GQ8N7S2 189 aa22.56■■□□□ 1.2
DDX55-212ENST00000544738 LY75O60449 1722 aa22.56■■□□□ 1.2
DDX55-212ENST00000544738 FBLN1P23142 703 aa22.54■■□□□ 1.2
DDX55-212ENST00000544738 SMIM5Q71RC9 77 aa22.54■■□□□ 1.2
DDX55-212ENST00000544738 DOT1LQ8TEK3 1739 aa22.54■■□□□ 1.2
DDX55-212ENST00000544738 PHF14O94880 888 aa22.53■■□□□ 1.2
DDX55-212ENST00000544738 HMGB2P26583 209 aaKnown RBP22.53■■□□□ 1.2
DDX55-212ENST00000544738 HOXC9P31274 260 aa22.53■■□□□ 1.2
DDX55-212ENST00000544738 AK7Q96M32 723 aa22.53■■□□□ 1.2
DDX55-212ENST00000544738 MPRIPQ6WCQ1 1025 aa22.52■■□□□ 1.2
DDX55-212ENST00000544738 MAP3K19Q56UN5 1328 aa22.52■■□□□ 1.2
DDX55-212ENST00000544738 FYB1O15117 783 aa22.51■■□□□ 1.19
DDX55-212ENST00000544738 CAPN15O75808 1086 aa22.51■■□□□ 1.19
DDX55-212ENST00000544738 TOMM70O94826 608 aa22.51■■□□□ 1.19
DDX55-212ENST00000544738 USHBP1Q8N6Y0 703 aa22.51■■□□□ 1.19
DDX55-212ENST00000544738 AMIGO3Q86WK7 504 aa22.5■■□□□ 1.19
DDX55-212ENST00000544738 CCER1Q8TC90 406 aaPredicted RBP22.5■■□□□ 1.19
DDX55-212ENST00000544738 MEGF6O75095 1541 aa22.49■■□□□ 1.19
DDX55-212ENST00000544738 NBPF6Q5VWK0 638 aa22.49■■□□□ 1.19
DDX55-212ENST00000544738 RAPGEF4Q8WZA2 1011 aa22.49■■□□□ 1.19
DDX55-212ENST00000544738 NBPF4Q96M43 638 aa22.49■■□□□ 1.19
DDX55-212ENST00000544738 PALLDQ8WX93 1383 aa22.49■■□□□ 1.19
DDX55-212ENST00000544738 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.48■■□□□ 1.19
DDX55-212ENST00000544738 GGNBP2Q9H3C7 697 aa22.48■■□□□ 1.19
DDX55-212ENST00000544738 COL13A1Q5TAT6 717 aaPredicted RBP22.47■■□□□ 1.19
DDX55-212ENST00000544738 RTL1A6NKG5 1358 aa22.46■■□□□ 1.19
DDX55-212ENST00000544738 FAM208AQ9UK61 1670 aaKnown RBP22.46■■□□□ 1.19
DDX55-212ENST00000544738 TATP17735 454 aaPredicted RBP22.45■■□□□ 1.18
DDX55-212ENST00000544738 CGNL1Q0VF96 1302 aa22.45■■□□□ 1.18
DDX55-212ENST00000544738 HTRA3P83110 453 aa22.44■■□□□ 1.18
DDX55-212ENST00000544738 SMARCC1Q92922 1105 aaPredicted RBP22.44■■□□□ 1.18
DDX55-212ENST00000544738 NMRK2Q9NPI5 230 aa22.44■■□□□ 1.18
DDX55-212ENST00000544738 ARHGAP27Q6ZUM4 889 aa22.43■■□□□ 1.18
DDX55-212ENST00000544738 BCS1LQ9Y276 419 aa22.43■■□□□ 1.18
DDX55-212ENST00000544738 C5P01031 1676 aa22.42■■□□□ 1.18
DDX55-212ENST00000544738 EIF4G2P78344 907 aaKnown RBP eCLIP22.42■■□□□ 1.18
DDX55-212ENST00000544738 RRS1Q15050 365 aaKnown RBP22.42■■□□□ 1.18
DDX55-212ENST00000544738 CARD14Q9BXL6 1004 aa22.42■■□□□ 1.18
DDX55-212ENST00000544738 PCDH11XQ9BZA7 1347 aa22.4■■□□□ 1.18
DDX55-212ENST00000544738 PCDH11YQ9BZA8 1340 aa22.4■■□□□ 1.18
DDX55-212ENST00000544738 SSFA2P28290 1259 aa22.4■■□□□ 1.18
DDX55-212ENST00000544738 C16orf71Q8IYS4 520 aaPredicted RBP22.4■■□□□ 1.18
DDX55-212ENST00000544738 KLRG1Q96E93 195 aa22.4■■□□□ 1.18
DDX55-212ENST00000544738 RGPD2P0DJD1 1756 aa22.4■■□□□ 1.18
DDX55-212ENST00000544738 KIF24Q5T7B8 1368 aa22.39■■□□□ 1.18
DDX55-212ENST00000544738 A0A0G2JLW4 131 aa22.39■■□□□ 1.17
DDX55-212ENST00000544738 PCNTO95613 3336 aa22.39■■□□□ 1.17
DDX55-212ENST00000544738 SMG6Q86US8 1419 aaKnown RBP22.39■■□□□ 1.17
DDX55-212ENST00000544738 NSD3Q9BZ95 1437 aa22.39■■□□□ 1.17
DDX55-212ENST00000544738 KIF20BQ96Q89 1820 aa22.38■■□□□ 1.17
DDX55-212ENST00000544738 CYP27B1O15528 508 aa22.38■■□□□ 1.17
DDX55-212ENST00000544738 MMP10P09238 476 aa22.38■■□□□ 1.17
DDX55-212ENST00000544738 TNS4Q8IZW8 715 aa22.38■■□□□ 1.17
DDX55-212ENST00000544738 PIGBQ92521 554 aa22.38■■□□□ 1.17
DDX55-212ENST00000544738 LINC00116Q8NCU8 138 aa22.37■■□□□ 1.17
DDX55-212ENST00000544738 RBM46Q8TBY0 533 aaKnown RBP22.37■■□□□ 1.17
DDX55-212ENST00000544738 C4BP0C0L5 1744 aa22.37■■□□□ 1.17
DDX55-212ENST00000544738 GNPATO15228 680 aa22.36■■□□□ 1.17
DDX55-212ENST00000544738 INSRP06213 1382 aa22.36■■□□□ 1.17
DDX55-212ENST00000544738 FLT4P35916 1363 aa22.36■■□□□ 1.17
DDX55-212ENST00000544738 LOC102724428A0A0B4J2F2 783 aa22.35■■□□□ 1.17
DDX55-212ENST00000544738 HSPA5P11021 654 aaKnown RBP22.35■■□□□ 1.17
DDX55-212ENST00000544738 SIK1P57059 783 aa22.35■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms