RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 BRPF1P55201 1214 aaPredicted RBP6.28□□□□□ -1.4
SNHG1-220ENST00000544550 STAC3Q96MF2 364 aa6.28□□□□□ -1.4
SNHG1-220ENST00000544550 SPON1Q9HCB6 807 aa6.28□□□□□ -1.4
SNHG1-220ENST00000544550 ROBO2Q9HCK4 1378 aa6.28□□□□□ -1.4
SNHG1-220ENST00000544550 USP32Q8NFA0 1604 aa6.28□□□□□ -1.4
SNHG1-220ENST00000544550 CDC42BPGQ6DT37 1551 aa6.27□□□□□ -1.41
SNHG1-220ENST00000544550 C1QTNF8P60827 252 aa6.27□□□□□ -1.41
SNHG1-220ENST00000544550 XPCQ01831 940 aaPredicted RBP6.27□□□□□ -1.41
SNHG1-220ENST00000544550 PSME1Q06323 249 aa6.27□□□□□ -1.41
SNHG1-220ENST00000544550 EZH2Q15910 746 aaKnown RBP6.27□□□□□ -1.41
SNHG1-220ENST00000544550 FAM98CQ17RN3 349 aaKnown RBP6.27□□□□□ -1.41
SNHG1-220ENST00000544550 ZNF784Q8NCA9 323 aaPredicted RBP6.27□□□□□ -1.41
SNHG1-220ENST00000544550 DDX12PQ92771 950 aa6.27□□□□□ -1.41
SNHG1-220ENST00000544550 RGPD1P0DJD0 1748 aa6.27□□□□□ -1.41
SNHG1-220ENST00000544550 E9PCH4 1651 aa6.26□□□□□ -1.41
SNHG1-220ENST00000544550 ARHGAP33O14559 1287 aa6.26□□□□□ -1.41
SNHG1-220ENST00000544550 FAM196AQ6ZSG2 479 aa6.26□□□□□ -1.41
SNHG1-220ENST00000544550 AK7Q96M32 723 aa6.26□□□□□ -1.41
SNHG1-220ENST00000544550 CAMKK2Q96RR4 588 aa6.26□□□□□ -1.41
SNHG1-220ENST00000544550 ARHGEF10O15013 1369 aa6.26□□□□□ -1.41
SNHG1-220ENST00000544550 NUP155O75694 1391 aa6.26□□□□□ -1.41
SNHG1-220ENST00000544550 TNS3Q68CZ2 1445 aa6.25□□□□□ -1.41
SNHG1-220ENST00000544550 NEXMIFQ5QGS0 1516 aa6.25□□□□□ -1.41
SNHG1-220ENST00000544550 NWD2Q9ULI1 1742 aa6.25□□□□□ -1.41
SNHG1-220ENST00000544550 KCNQ2O43526 872 aa6.25□□□□□ -1.41
SNHG1-220ENST00000544550 PRIM1P49642 420 aaKnown RBP6.25□□□□□ -1.41
SNHG1-220ENST00000544550 TMEM132AQ24JP5 1023 aa6.25□□□□□ -1.41
SNHG1-220ENST00000544550 PCDHGA4Q9Y5G9 962 aa6.25□□□□□ -1.41
SNHG1-220ENST00000544550 SBNO1A3KN83 1393 aa6.24□□□□□ -1.41
SNHG1-220ENST00000544550 ROCK1Q13464 1354 aa6.24□□□□□ -1.41
SNHG1-220ENST00000544550 NUTM2FA1L443 756 aa6.24□□□□□ -1.41
SNHG1-220ENST00000544550 APBA3O96018 575 aa6.24□□□□□ -1.41
SNHG1-220ENST00000544550 FAM50AQ14320 339 aaKnown RBP6.24□□□□□ -1.41
SNHG1-220ENST00000544550 KRT28Q7Z3Y7 464 aa6.24□□□□□ -1.41
SNHG1-220ENST00000544550 KRI1Q8N9T8 703 aaKnown RBP6.24□□□□□ -1.41
SNHG1-220ENST00000544550 BRWD3Q6RI45 1802 aa6.24□□□□□ -1.41
SNHG1-220ENST00000544550 NAIPQ13075 1403 aa6.24□□□□□ -1.41
SNHG1-220ENST00000544550 RPGRIP1LQ68CZ1 1315 aa6.24□□□□□ -1.41
SNHG1-220ENST00000544550 FAM83GA6ND36 823 aa6.23□□□□□ -1.41
SNHG1-220ENST00000544550 PHF14O94880 888 aa6.23□□□□□ -1.41
SNHG1-220ENST00000544550 NEUROD2Q15784 382 aa6.23□□□□□ -1.41
SNHG1-220ENST00000544550 EPAS1Q99814 870 aa6.23□□□□□ -1.41
SNHG1-220ENST00000544550 BTG4Q9NY30 223 aa6.23□□□□□ -1.41
SNHG1-220ENST00000544550 KIF1AQ12756 1690 aa6.23□□□□□ -1.41
SNHG1-220ENST00000544550 SPATA31A5Q5VU36 1347 aa6.23□□□□□ -1.41
SNHG1-220ENST00000544550 SPATA31A7Q8IWB4 1347 aa6.23□□□□□ -1.41
SNHG1-220ENST00000544550 C11orf95C9JLR9 678 aaPredicted RBP6.22□□□□□ -1.41
SNHG1-220ENST00000544550 FCHSD2O94868 740 aa6.22□□□□□ -1.41
SNHG1-220ENST00000544550 TRIM37O94972 964 aa6.22□□□□□ -1.41
SNHG1-220ENST00000544550 FAM182BQ5T319 152 aa6.22□□□□□ -1.41
SNHG1-220ENST00000544550 CABLES1Q8TDN4 633 aa6.22□□□□□ -1.41
SNHG1-220ENST00000544550 RRBP1Q9P2E9 1410 aaKnown RBP6.22□□□□□ -1.41
SNHG1-220ENST00000544550 MINK1Q8N4C8 1332 aaPredicted RBP6.22□□□□□ -1.41
SNHG1-220ENST00000544550 PLCH1Q4KWH8 1693 aa6.21□□□□□ -1.42
SNHG1-220ENST00000544550 TRIM66O15016 1216 aa6.21□□□□□ -1.42
SNHG1-220ENST00000544550 GNPATO15228 680 aa6.21□□□□□ -1.42
SNHG1-220ENST00000544550 HIC1Q14526 733 aa6.21□□□□□ -1.42
SNHG1-220ENST00000544550 AXIN2Q9Y2T1 843 aa6.21□□□□□ -1.42
SNHG1-220ENST00000544550 TECPR2O15040 1411 aa6.21□□□□□ -1.42
SNHG1-220ENST00000544550 TNS1Q9HBL0 1735 aaKnown RBP6.21□□□□□ -1.42
SNHG1-220ENST00000544550 GIGYF1O75420 1035 aaPredicted RBP6.2□□□□□ -1.42
SNHG1-220ENST00000544550 NUDT7P0C024 238 aa6.2□□□□□ -1.42
SNHG1-220ENST00000544550 MAP2K5Q13163 448 aa6.2□□□□□ -1.42
SNHG1-220ENST00000544550 PTGDRQ13258 359 aa6.2□□□□□ -1.42
SNHG1-220ENST00000544550 PDE3BQ13370 1112 aa6.2□□□□□ -1.42
SNHG1-220ENST00000544550 KHSRPQ92945 711 aaKnown RBP eCLIP6.2□□□□□ -1.429e-13■■■□□ 17.6
SNHG1-220ENST00000544550 KCTD12Q96CX2 325 aaKnown RBP6.2□□□□□ -1.42
SNHG1-220ENST00000544550 PCDHGA10Q9Y5H3 936 aa6.2□□□□□ -1.42
SNHG1-220ENST00000544550 IRF6O14896 467 aa6.19□□□□□ -1.42
SNHG1-220ENST00000544550 HRO43593 1189 aa6.19□□□□□ -1.42
SNHG1-220ENST00000544550 TYW1BQ6NUM6 668 aa6.19□□□□□ -1.42
SNHG1-220ENST00000544550 Q6ZNB5 142 aa6.19□□□□□ -1.42
SNHG1-220ENST00000544550 LHX6Q9UPM6 363 aa6.19□□□□□ -1.42
SNHG1-220ENST00000544550 NRXN1Q9ULB1 1477 aa6.19□□□□□ -1.42
SNHG1-220ENST00000544550 THSD7AQ9UPZ6 1657 aa6.19□□□□□ -1.42
SNHG1-220ENST00000544550 SPATA31A1Q5TZJ5 1347 aa6.19□□□□□ -1.42
SNHG1-220ENST00000544550 ABCC11Q96J66 1382 aa6.18□□□□□ -1.42
SNHG1-220ENST00000544550 COL14A1Q05707 1796 aaKnown RBP6.18□□□□□ -1.42
SNHG1-220ENST00000544550 CLTCL1P53675 1640 aa6.18□□□□□ -1.42
SNHG1-220ENST00000544550 RREB1Q92766 1687 aa6.18□□□□□ -1.42
SNHG1-220ENST00000544550 FECHP22830 423 aa6.18□□□□□ -1.42
SNHG1-220ENST00000544550 LAPTM4AQ15012 233 aa6.18□□□□□ -1.42
SNHG1-220ENST00000544550 POTEEQ6S8J3 1075 aa6.18□□□□□ -1.42
SNHG1-220ENST00000544550 WAPLQ7Z5K2 1190 aa6.18□□□□□ -1.42
SNHG1-220ENST00000544550 FBXW7Q969H0 707 aa6.18□□□□□ -1.42
SNHG1-220ENST00000544550 SIRT1Q96EB6 747 aa6.18□□□□□ -1.42
SNHG1-220ENST00000544550 PRDM11Q9NQV5 511 aa6.18□□□□□ -1.42
SNHG1-220ENST00000544550 NPDC1Q9NQX5 325 aaPredicted RBP6.18□□□□□ -1.42
SNHG1-220ENST00000544550 NRAPQ86VF7 1730 aa6.18□□□□□ -1.42
SNHG1-220ENST00000544550 MAP3K7O43318 606 aa6.17□□□□□ -1.42
SNHG1-220ENST00000544550 FOSBP53539 338 aa6.17□□□□□ -1.42
SNHG1-220ENST00000544550 PDE4DQ08499 809 aa6.17□□□□□ -1.42
SNHG1-220ENST00000544550 CCDC102AQ96A19 550 aa6.17□□□□□ -1.42
SNHG1-220ENST00000544550 CDHR5Q9HBB8 845 aa6.17□□□□□ -1.42
SNHG1-220ENST00000544550 STK26Q9P289 416 aa6.17□□□□□ -1.42
SNHG1-220ENST00000544550 GPRASP1Q5JY77 1395 aa6.17□□□□□ -1.42
SNHG1-220ENST00000544550 NUP188Q5SRE5 1749 aa6.16□□□□□ -1.42
SNHG1-220ENST00000544550 NRKQ7Z2Y5 1582 aa6.16□□□□□ -1.42
SNHG1-220ENST00000544550 PLSCR1O15162 318 aa6.16□□□□□ -1.42
SNHG1-220ENST00000544550 SYT17Q9BSW7 474 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms