RNA–Protein interactions for RNA: ENST00000544409.5

LRTOMT-221, Transcript of leucine rich transmembrane and O-methyltransferase domain containing, humanhuman

TSL 1 (best)

Gene LRTOMT, Length 3,182 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRTOMT-221ENST00000544409 ARHGEF10O15013 1369 aa15.35■□□□□ 0.05
LRTOMT-221ENST00000544409 SOX12O15370 315 aa15.35■□□□□ 0.05
LRTOMT-221ENST00000544409 NGDNQ8NEJ9 315 aaKnown RBP15.35■□□□□ 0.05
LRTOMT-221ENST00000544409 C1orf115Q9H7X2 142 aa15.35■□□□□ 0.05
LRTOMT-221ENST00000544409 RIMS1Q86UR5 1692 aaKnown RBP15.35■□□□□ 0.05
LRTOMT-221ENST00000544409 RGPD8O14715 1765 aaPredicted RBP15.35■□□□□ 0.05
LRTOMT-221ENST00000544409 CHL1O00533 1208 aa15.34■□□□□ 0.05
LRTOMT-221ENST00000544409 RRP9O43818 475 aaKnown RBP15.34■□□□□ 0.05
LRTOMT-221ENST00000544409 ANKRD45Q5TZF3 282 aa15.34■□□□□ 0.05
LRTOMT-221ENST00000544409 MAP3K19Q56UN5 1328 aa15.34■□□□□ 0.05
LRTOMT-221ENST00000544409 SBNO1A3KN83 1393 aa15.33■□□□□ 0.05
LRTOMT-221ENST00000544409 KIAA0232Q92628 1395 aa15.33■□□□□ 0.05
LRTOMT-221ENST00000544409 MCM10Q7L590 875 aa15.33■□□□□ 0.04
LRTOMT-221ENST00000544409 TBC1D2Q9BYX2 928 aa15.33■□□□□ 0.04
LRTOMT-221ENST00000544409 XRN1Q8IZH2 1706 aaKnown RBP15.33■□□□□ 0.04
LRTOMT-221ENST00000544409 FLT4P35916 1363 aa15.33■□□□□ 0.04
LRTOMT-221ENST00000544409 SLKQ9H2G2 1235 aaPredicted RBP15.32■□□□□ 0.04
LRTOMT-221ENST00000544409 BMP2KLQ5H9B9 411 aa15.31■□□□□ 0.04
LRTOMT-221ENST00000544409 PIK3C2AO00443 1686 aa15.31■□□□□ 0.04
LRTOMT-221ENST00000544409 SIRT2Q8IXJ6 389 aa15.31■□□□□ 0.04
LRTOMT-221ENST00000544409 ANKARQ7Z5J8 1434 aa15.31■□□□□ 0.04
LRTOMT-221ENST00000544409 AMPHP49418 695 aa15.3■□□□□ 0.04
LRTOMT-221ENST00000544409 INTS3Q68E01 1043 aaKnown RBP15.3■□□□□ 0.04
LRTOMT-221ENST00000544409 CRB1P82279 1406 aa15.3■□□□□ 0.04
LRTOMT-221ENST00000544409 KRT24Q2M2I5 525 aa15.3■□□□□ 0.04
LRTOMT-221ENST00000544409 RTF1Q92541 710 aaKnown RBP15.29■□□□□ 0.04
LRTOMT-221ENST00000544409 ANTXR1Q9H6X2 564 aa15.29■□□□□ 0.04
LRTOMT-221ENST00000544409 PTPRCP08575 1304 aa15.29■□□□□ 0.04
LRTOMT-221ENST00000544409 KDRP35968 1356 aa15.29■□□□□ 0.04
LRTOMT-221ENST00000544409 MTHFSDQ2M296 383 aaKnown RBP15.28■□□□□ 0.04
LRTOMT-221ENST00000544409 RGS12O14924 1447 aa15.27■□□□□ 0.04
LRTOMT-221ENST00000544409 L1TD1Q5T7N2 865 aaKnown RBP15.27■□□□□ 0.04
LRTOMT-221ENST00000544409 IGSF1Q8N6C5 1336 aa15.27■□□□□ 0.04
LRTOMT-221ENST00000544409 GAS2L2Q8NHY3 880 aa15.27■□□□□ 0.03
LRTOMT-221ENST00000544409 NLRP6P59044 892 aa15.26■□□□□ 0.03
LRTOMT-221ENST00000544409 EYA1Q99502 592 aa15.26■□□□□ 0.03
LRTOMT-221ENST00000544409 RBM25P49756 843 aaKnown RBP15.26■□□□□ 0.03
LRTOMT-221ENST00000544409 CEP170BQ9Y4F5 1589 aaPredicted RBP15.26■□□□□ 0.03
LRTOMT-221ENST00000544409 FOXO3O43524 673 aa15.26■□□□□ 0.03
LRTOMT-221ENST00000544409 KCNA6P17658 529 aa15.26■□□□□ 0.03
LRTOMT-221ENST00000544409 TSPYL4Q9UJ04 414 aa15.26■□□□□ 0.03
LRTOMT-221ENST00000544409 DCTPP1Q9H773 170 aa15.25■□□□□ 0.03
LRTOMT-221ENST00000544409 USP54Q70EL1 1684 aa15.25■□□□□ 0.03
LRTOMT-221ENST00000544409 HSCBQ8IWL3 235 aa15.25■□□□□ 0.03
LRTOMT-221ENST00000544409 RPAP2Q8IXW5 612 aaPredicted RBP15.24■□□□□ 0.03
LRTOMT-221ENST00000544409 ANKRD44Q8N8A2 993 aa15.24■□□□□ 0.03
LRTOMT-221ENST00000544409 CLCN1P35523 988 aa15.24■□□□□ 0.03
LRTOMT-221ENST00000544409 MARF1Q9Y4F3 1742 aaKnown RBP15.24■□□□□ 0.03
LRTOMT-221ENST00000544409 MSH6P52701 1360 aa15.24■□□□□ 0.03
LRTOMT-221ENST00000544409 HTATSF1O43719 755 aaKnown RBP15.24■□□□□ 0.03
LRTOMT-221ENST00000544409 SLC4A2P04920 1241 aa15.24■□□□□ 0.03
LRTOMT-221ENST00000544409 MIS18AQ9NYP9 233 aa15.24■□□□□ 0.03
LRTOMT-221ENST00000544409 XRCC6P12956 609 aaKnown RBP eCLIP15.23■□□□□ 0.03
LRTOMT-221ENST00000544409 ATP10DQ9P241 1426 aa15.23■□□□□ 0.03
LRTOMT-221ENST00000544409 A0A0U1RQG5 324 aaPredicted RBP15.23■□□□□ 0.03
LRTOMT-221ENST00000544409 PANK2Q9BZ23 570 aa15.23■□□□□ 0.03
LRTOMT-221ENST00000544409 HOXC9P31274 260 aa15.22■□□□□ 0.03
LRTOMT-221ENST00000544409 SPRYD3Q8NCJ5 442 aa15.22■□□□□ 0.03
LRTOMT-221ENST00000544409 TBC1D9Q6ZT07 1266 aa15.22■□□□□ 0.03
LRTOMT-221ENST00000544409 RTL1A6NKG5 1358 aa15.22■□□□□ 0.03
LRTOMT-221ENST00000544409 LRRC37A3O60309 1634 aa15.21■□□□□ 0.03
LRTOMT-221ENST00000544409 NUTM2GQ5VZR2 741 aa15.21■□□□□ 0.03
LRTOMT-221ENST00000544409 CEP85Q6P2H3 762 aa15.21■□□□□ 0.03
LRTOMT-221ENST00000544409 CDC45O75419 566 aa15.21■□□□□ 0.03
LRTOMT-221ENST00000544409 ABTB2Q8N961 1025 aa15.21■□□□□ 0.03
LRTOMT-221ENST00000544409 GZF1Q9H116 711 aaPredicted RBP15.21■□□□□ 0.03
LRTOMT-221ENST00000544409 PLEKHM2Q8IWE5 1019 aa15.2■□□□□ 0.02
LRTOMT-221ENST00000544409 SNX21Q969T3 373 aa15.2■□□□□ 0.02
LRTOMT-221ENST00000544409 CHMP5Q9NZZ3 219 aa15.2■□□□□ 0.02
LRTOMT-221ENST00000544409 GNAT3A8MTJ3 354 aa15.2■□□□□ 0.02
LRTOMT-221ENST00000544409 MEIS3Q99687 375 aa15.2■□□□□ 0.02
LRTOMT-221ENST00000544409 CHD2O14647 1828 aaKnown RBP15.19■□□□□ 0.02
LRTOMT-221ENST00000544409 NWD1Q149M9 1564 aa15.19■□□□□ 0.02
LRTOMT-221ENST00000544409 CCT4P50991 539 aaKnown RBP15.19■□□□□ 0.02
LRTOMT-221ENST00000544409 STK31Q9BXU1 1019 aa15.19■□□□□ 0.02
LRTOMT-221ENST00000544409 GOLGA6L3A6NEY3 463 aa15.18■□□□□ 0.02
LRTOMT-221ENST00000544409 HMMRO75330 724 aa15.18■□□□□ 0.02
LRTOMT-221ENST00000544409 GSPT1P15170 499 aaKnown RBP15.18■□□□□ 0.02
LRTOMT-221ENST00000544409 TTC22Q5TAA0 569 aa15.18■□□□□ 0.02
LRTOMT-221ENST00000544409 G2E3Q7L622 706 aa15.18■□□□□ 0.02
LRTOMT-221ENST00000544409 C14orf37Q86TY3 774 aa15.18■□□□□ 0.02
LRTOMT-221ENST00000544409 PHF8Q9UPP1 1060 aa15.18■□□□□ 0.02
LRTOMT-221ENST00000544409 MAP3K5Q99683 1374 aa15.17■□□□□ 0.02
LRTOMT-221ENST00000544409 SLC4A10Q6U841 1118 aa15.17■□□□□ 0.02
LRTOMT-221ENST00000544409 FAM208AQ9UK61 1670 aaKnown RBP15.17■□□□□ 0.02
LRTOMT-221ENST00000544409 ANKLE2Q86XL3 938 aa15.17■□□□□ 0.02
LRTOMT-221ENST00000544409 CCDC30Q5VVM6 783 aa15.16■□□□□ 0.02
LRTOMT-221ENST00000544409 LTV1Q96GA3 475 aaPredicted RBP15.16■□□□□ 0.02
LRTOMT-221ENST00000544409 NCOA3Q9Y6Q9 1424 aa15.16■□□□□ 0.02
LRTOMT-221ENST00000544409 LTN1O94822 1766 aa15.16■□□□□ 0.02
LRTOMT-221ENST00000544409 SOS1Q07889 1333 aaPredicted RBP15.16■□□□□ 0.02
LRTOMT-221ENST00000544409 F6X3S4 739 aa15.16■□□□□ 0.02
LRTOMT-221ENST00000544409 CACNA1FO60840 1977 aa15.16■□□□□ 0.02
LRTOMT-221ENST00000544409 C16orf71Q8IYS4 520 aaPredicted RBP15.15■□□□□ 0.02
LRTOMT-221ENST00000544409 BABAM1Q9NWV8 329 aa15.15■□□□□ 0.02
LRTOMT-221ENST00000544409 HSP90AB1P08238 724 aaKnown RBP15.15■□□□□ 0.02
LRTOMT-221ENST00000544409 RBM10P98175 930 aaKnown RBP15.15■□□□□ 0.02
LRTOMT-221ENST00000544409 KIF2CQ99661 725 aa15.15■□□□□ 0.02
LRTOMT-221ENST00000544409 ZNF142P52746 1687 aaPredicted RBP15.14■□□□□ 0.01
LRTOMT-221ENST00000544409 MCM4P33991 863 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms