RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 BACH2Q9BYV9 841 aa18.38■□□□□ 0.53
VPS33A-209ENST00000544349 AXIN2Q9Y2T1 843 aa18.38■□□□□ 0.53
VPS33A-209ENST00000544349 RGPD5Q99666 1765 aa18.38■□□□□ 0.53
VPS33A-209ENST00000544349 MS4A1P11836 297 aa18.37■□□□□ 0.53
VPS33A-209ENST00000544349 CANXP27824 592 aaKnown RBP18.37■□□□□ 0.53
VPS33A-209ENST00000544349 CABLES1Q8TDN4 633 aa18.37■□□□□ 0.53
VPS33A-209ENST00000544349 ANKRD24Q8TF21 1146 aa18.37■□□□□ 0.53
VPS33A-209ENST00000544349 FRAT1Q92837 279 aaPredicted RBP18.37■□□□□ 0.53
VPS33A-209ENST00000544349 LRRC59Q96AG4 307 aaKnown RBP18.37■□□□□ 0.53
VPS33A-209ENST00000544349 NPM2Q86SE8 214 aaKnown RBP18.37■□□□□ 0.53
VPS33A-209ENST00000544349 HTATSF1O43719 755 aaKnown RBP18.36■□□□□ 0.53
VPS33A-209ENST00000544349 SSH1Q8WYL5 1049 aa18.36■□□□□ 0.53
VPS33A-209ENST00000544349 RTF1Q92541 710 aaKnown RBP18.36■□□□□ 0.53
VPS33A-209ENST00000544349 NCAPD2Q15021 1401 aa18.35■□□□□ 0.53
VPS33A-209ENST00000544349 CRB1P82279 1406 aa18.35■□□□□ 0.53
VPS33A-209ENST00000544349 ZNF428Q96B54 188 aa18.35■□□□□ 0.53
VPS33A-209ENST00000544349 SMC4Q9NTJ3 1288 aa18.35■□□□□ 0.53
VPS33A-209ENST00000544349 COL18A1P39060 1754 aa18.35■□□□□ 0.53
VPS33A-209ENST00000544349 CHL1O00533 1208 aa18.34■□□□□ 0.53
VPS33A-209ENST00000544349 CAMTA1Q9Y6Y1 1673 aa18.34■□□□□ 0.53
VPS33A-209ENST00000544349 GNAT3A8MTJ3 354 aa18.34■□□□□ 0.53
VPS33A-209ENST00000544349 VAMP4O75379 141 aa18.34■□□□□ 0.53
VPS33A-209ENST00000544349 ALDH1L2Q3SY69 923 aa18.34■□□□□ 0.53
VPS33A-209ENST00000544349 NHSL1Q5SYE7 1610 aa18.33■□□□□ 0.53
VPS33A-209ENST00000544349 ERBB3P21860 1342 aa18.33■□□□□ 0.53
VPS33A-209ENST00000544349 CENPQQ7L2Z9 268 aaPredicted RBP18.32■□□□□ 0.52
VPS33A-209ENST00000544349 TSPYL6Q8N831 410 aa18.32■□□□□ 0.52
VPS33A-209ENST00000544349 PANK1Q8TE04 598 aa18.32■□□□□ 0.52
VPS33A-209ENST00000544349 ZKSCAN2Q63HK3 967 aa18.32■□□□□ 0.52
VPS33A-209ENST00000544349 CPDO75976 1380 aa18.32■□□□□ 0.52
VPS33A-209ENST00000544349 MAP3K5Q99683 1374 aa18.32■□□□□ 0.52
VPS33A-209ENST00000544349 ABCC6O95255 1503 aa18.31■□□□□ 0.52
VPS33A-209ENST00000544349 LTBP4Q8N2S1 1624 aa18.31■□□□□ 0.52
VPS33A-209ENST00000544349 TWISTNBQ3B726 338 aaPredicted RBP18.31■□□□□ 0.52
VPS33A-209ENST00000544349 C8orf58Q8NAV2 365 aa18.31■□□□□ 0.52
VPS33A-209ENST00000544349 TNNQ9UQP3 1299 aa18.31■□□□□ 0.52
VPS33A-209ENST00000544349 LMO7Q8WWI1 1683 aa18.3■□□□□ 0.52
VPS33A-209ENST00000544349 COG6Q9Y2V7 657 aa18.3■□□□□ 0.52
VPS33A-209ENST00000544349 LRRC37A3O60309 1634 aa18.3■□□□□ 0.52
VPS33A-209ENST00000544349 KIAA0232Q92628 1395 aa18.3■□□□□ 0.52
VPS33A-209ENST00000544349 ELL2O00472 640 aaPredicted RBP18.29■□□□□ 0.52
VPS33A-209ENST00000544349 BRPF1P55201 1214 aaPredicted RBP18.29■□□□□ 0.52
VPS33A-209ENST00000544349 RLBP1P12271 317 aa18.29■□□□□ 0.52
VPS33A-209ENST00000544349 CHRNA2Q15822 529 aa18.29■□□□□ 0.52
VPS33A-209ENST00000544349 KIF16BQ96L93 1317 aa18.28■□□□□ 0.52
VPS33A-209ENST00000544349 PLEKHO1Q53GL0 409 aaPredicted RBP18.28■□□□□ 0.52
VPS33A-209ENST00000544349 IL17REQ8NFR9 667 aa18.28■□□□□ 0.52
VPS33A-209ENST00000544349 NOB1Q9ULX3 412 aaKnown RBP18.28■□□□□ 0.52
VPS33A-209ENST00000544349 VIRMAQ69YN4 1812 aaKnown RBP18.28■□□□□ 0.52
VPS33A-209ENST00000544349 AMOTQ4VCS5 1084 aa18.28■□□□□ 0.52
VPS33A-209ENST00000544349 CLUAP1Q96AJ1 413 aa18.27■□□□□ 0.52
VPS33A-209ENST00000544349 TRIM27P14373 513 aa18.26■□□□□ 0.51
VPS33A-209ENST00000544349 ATF7IPQ6VMQ6 1270 aa18.26■□□□□ 0.51
VPS33A-209ENST00000544349 DZIP1LQ8IYY4 767 aaKnown RBP18.26■□□□□ 0.51
VPS33A-209ENST00000544349 MIS18AQ9NYP9 233 aa18.26■□□□□ 0.51
VPS33A-209ENST00000544349 ZBTB47Q9UFB7 747 aaPredicted RBP18.26■□□□□ 0.51
VPS33A-209ENST00000544349 IPO8O15397 1037 aaKnown RBP18.26■□□□□ 0.51
VPS33A-209ENST00000544349 MRPL50Q8N5N7 158 aaKnown RBP18.26■□□□□ 0.51
VPS33A-209ENST00000544349 TSPYL4Q9UJ04 414 aa18.26■□□□□ 0.51
VPS33A-209ENST00000544349 FAM208AQ9UK61 1670 aaKnown RBP18.26■□□□□ 0.51
VPS33A-209ENST00000544349 ABCA3Q99758 1704 aa18.25■□□□□ 0.51
VPS33A-209ENST00000544349 NLRP2Q9NX02 1062 aa18.25■□□□□ 0.51
VPS33A-209ENST00000544349 NBR1Q14596 966 aa18.25■□□□□ 0.51
VPS33A-209ENST00000544349 KRT24Q2M2I5 525 aa18.25■□□□□ 0.51
VPS33A-209ENST00000544349 AKAP4Q5JQC9 854 aa18.25■□□□□ 0.51
VPS33A-209ENST00000544349 HAP1P54257 671 aaPredicted RBP18.24■□□□□ 0.51
VPS33A-209ENST00000544349 ZNF530Q6P9A1 599 aaPredicted RBP18.24■□□□□ 0.51
VPS33A-209ENST00000544349 FTSJ3Q8IY81 847 aaKnown RBP18.24■□□□□ 0.51
VPS33A-209ENST00000544349 CEMIPQ8WUJ3 1361 aa18.24■□□□□ 0.51
VPS33A-209ENST00000544349 ROBO1Q9Y6N7 1651 aa18.24■□□□□ 0.51
VPS33A-209ENST00000544349 CSB-PGBD3P0DP91 1061 aa18.23■□□□□ 0.51
VPS33A-209ENST00000544349 AAMPQ13685 434 aa18.23■□□□□ 0.51
VPS33A-209ENST00000544349 BABAM1Q9NWV8 329 aa18.23■□□□□ 0.51
VPS33A-209ENST00000544349 MVPQ14764 893 aaKnown RBP18.23■□□□□ 0.51
VPS33A-209ENST00000544349 TAF7Q15545 349 aaPredicted RBP18.23■□□□□ 0.51
VPS33A-209ENST00000544349 PRDM11Q9NQV5 511 aa18.23■□□□□ 0.51
VPS33A-209ENST00000544349 IGHDP01880 384 aa18.22■□□□□ 0.51
VPS33A-209ENST00000544349 ARHGAP45Q92619 1136 aa18.22■□□□□ 0.51
VPS33A-209ENST00000544349 LGR6Q9HBX8 967 aa18.22■□□□□ 0.51
VPS33A-209ENST00000544349 RGS3P49796 1198 aa18.21■□□□□ 0.51
VPS33A-209ENST00000544349 C8orf34Q49A92 452 aa18.21■□□□□ 0.51
VPS33A-209ENST00000544349 RAPGEF4Q8WZA2 1011 aa18.21■□□□□ 0.51
VPS33A-209ENST00000544349 C1orf141Q5JVX7 400 aa18.2■□□□□ 0.5
VPS33A-209ENST00000544349 AHDC1Q5TGY3 1603 aaPredicted RBP18.2■□□□□ 0.5
VPS33A-209ENST00000544349 TATP17735 454 aaPredicted RBP18.19■□□□□ 0.5
VPS33A-209ENST00000544349 RNMTO43148 476 aaKnown RBP18.18■□□□□ 0.5
VPS33A-209ENST00000544349 MPRIPQ6WCQ1 1025 aa18.18■□□□□ 0.5
VPS33A-209ENST00000544349 TMEM57Q8N5G2 664 aa18.18■□□□□ 0.5
VPS33A-209ENST00000544349 PLEKHG2Q9H7P9 1386 aa18.18■□□□□ 0.5
VPS33A-209ENST00000544349 MEGF6O75095 1541 aa18.17■□□□□ 0.5
VPS33A-209ENST00000544349 DDX19BQ9UMR2 479 aa18.17■□□□□ 0.5
VPS33A-209ENST00000544349 WDR17Q8IZU2 1322 aa18.17■□□□□ 0.5
VPS33A-209ENST00000544349 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.17■□□□□ 0.5
VPS33A-209ENST00000544349 OVOS2A0A0G2JMS6 1433 aa18.17■□□□□ 0.5
VPS33A-209ENST00000544349 COL5A2P05997 1499 aaPredicted RBP18.16■□□□□ 0.5
VPS33A-209ENST00000544349 FAM161AQ3B820 660 aa18.16■□□□□ 0.5
VPS33A-209ENST00000544349 ITPRIPQ8IWB1 547 aa18.16■□□□□ 0.5
VPS33A-209ENST00000544349 TEFQ10587 303 aa18.16■□□□□ 0.5
VPS33A-209ENST00000544349 SPG7Q9UQ90 795 aa18.16■□□□□ 0.5
VPS33A-209ENST00000544349 ADAMTS7Q9UKP4 1686 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms