RNA–Protein interactions for RNA: ENST00000543368.1

NPIPB3-212, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 3

Gene NPIPB3, Length 685 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-212ENST00000543368 MSH5O43196 834 aa14.01□□□□□ -0.17
NPIPB3-212ENST00000543368 TNNT2P45379 298 aaPredicted RBP14□□□□□ -0.17
NPIPB3-212ENST00000543368 R3HDM1Q15032 1099 aaKnown RBP14□□□□□ -0.17
NPIPB3-212ENST00000543368 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14□□□□□ -0.17
NPIPB3-212ENST00000543368 SPG7Q9UQ90 795 aa14□□□□□ -0.17
NPIPB3-212ENST00000543368 NHSQ6T4R5 1651 aa14□□□□□ -0.17
NPIPB3-212ENST00000543368 MEGF6O75095 1541 aa14□□□□□ -0.17
NPIPB3-212ENST00000543368 NCAPD2Q15021 1401 aa13.99□□□□□ -0.17
NPIPB3-212ENST00000543368 PSDA5PKW4 1024 aaPredicted RBP13.99□□□□□ -0.17
NPIPB3-212ENST00000543368 ACSBG1Q96GR2 724 aa13.99□□□□□ -0.17
NPIPB3-212ENST00000543368 NPC1L1Q9UHC9 1359 aa13.98□□□□□ -0.17
NPIPB3-212ENST00000543368 TXNRD1Q16881 649 aa13.98□□□□□ -0.17
NPIPB3-212ENST00000543368 AMER1Q5JTC6 1135 aaPredicted RBP13.98□□□□□ -0.17
NPIPB3-212ENST00000543368 USHBP1Q8N6Y0 703 aa13.98□□□□□ -0.17
NPIPB3-212ENST00000543368 MAP2P11137 1827 aaKnown RBP13.98□□□□□ -0.17
NPIPB3-212ENST00000543368 KCNQ2O43526 872 aa13.97□□□□□ -0.17
NPIPB3-212ENST00000543368 SLC27A3Q5K4L6 730 aa13.97□□□□□ -0.17
NPIPB3-212ENST00000543368 EYA1Q99502 592 aa13.97□□□□□ -0.17
NPIPB3-212ENST00000543368 STK32BQ9NY57 414 aa13.97□□□□□ -0.17
NPIPB3-212ENST00000543368 NUP188Q5SRE5 1749 aa13.97□□□□□ -0.17
NPIPB3-212ENST00000543368 EIF4A2Q14240 407 aaKnown RBP13.96□□□□□ -0.17
NPIPB3-212ENST00000543368 LRP5O75197 1615 aa13.96□□□□□ -0.17
NPIPB3-212ENST00000543368 PER1O15534 1290 aaPredicted RBP13.95□□□□□ -0.18
NPIPB3-212ENST00000543368 PRIM1P49642 420 aaKnown RBP13.95□□□□□ -0.18
NPIPB3-212ENST00000543368 PTF1AQ7RTS3 328 aa13.95□□□□□ -0.18
NPIPB3-212ENST00000543368 SYTL4Q96C24 671 aaPredicted RBP13.95□□□□□ -0.18
NPIPB3-212ENST00000543368 RGPD2P0DJD1 1756 aa13.95□□□□□ -0.18
NPIPB3-212ENST00000543368 IGSF1Q8N6C5 1336 aa13.94□□□□□ -0.18
NPIPB3-212ENST00000543368 HSP90AB1P08238 724 aaKnown RBP13.93□□□□□ -0.18
NPIPB3-212ENST00000543368 NKX1-1Q15270 411 aaPredicted RBP13.93□□□□□ -0.18
NPIPB3-212ENST00000543368 AMOTQ4VCS5 1084 aa13.93□□□□□ -0.18
NPIPB3-212ENST00000543368 IFNL2Q8IZJ0 200 aa13.93□□□□□ -0.18
NPIPB3-212ENST00000543368 PROM2Q8N271 834 aa13.93□□□□□ -0.18
NPIPB3-212ENST00000543368 SLC15A2Q16348 729 aa13.92□□□□□ -0.18
NPIPB3-212ENST00000543368 PLEKHO1Q53GL0 409 aaPredicted RBP13.92□□□□□ -0.18
NPIPB3-212ENST00000543368 SMARCC1Q92922 1105 aaPredicted RBP13.92□□□□□ -0.18
NPIPB3-212ENST00000543368 SPON1Q9HCB6 807 aa13.92□□□□□ -0.18
NPIPB3-212ENST00000543368 PKD1L3Q7Z443 1732 aa13.91□□□□□ -0.18
NPIPB3-212ENST00000543368 CYP27B1O15528 508 aa13.91□□□□□ -0.18
NPIPB3-212ENST00000543368 BTAF1O14981 1849 aa13.91□□□□□ -0.18
NPIPB3-212ENST00000543368 SHANK3Q9BYB0 1731 aa13.9□□□□□ -0.18
NPIPB3-212ENST00000543368 MTHFSP49914 203 aa13.9□□□□□ -0.18
NPIPB3-212ENST00000543368 CC2D1BQ5T0F9 858 aaKnown RBP13.9□□□□□ -0.18
NPIPB3-212ENST00000543368 DOT1LQ8TEK3 1739 aa13.9□□□□□ -0.18
NPIPB3-212ENST00000543368 KAT6BQ8WYB5 2073 aa13.89□□□□□ -0.19
NPIPB3-212ENST00000543368 ANO8Q9HCE9 1232 aaPredicted RBP13.89□□□□□ -0.19
NPIPB3-212ENST00000543368 PHKG2P15735 406 aa13.88□□□□□ -0.19
NPIPB3-212ENST00000543368 IL13P35225 146 aa13.88□□□□□ -0.19
NPIPB3-212ENST00000543368 CCNL1Q9UK58 526 aaPredicted RBP13.88□□□□□ -0.19
NPIPB3-212ENST00000543368 KDRP35968 1356 aa13.87□□□□□ -0.19
NPIPB3-212ENST00000543368 DIAPH1O60610 1272 aaKnown RBP13.87□□□□□ -0.19
NPIPB3-212ENST00000543368 C1orf141Q5JVX7 400 aa13.87□□□□□ -0.19
NPIPB3-212ENST00000543368 MPRIPQ6WCQ1 1025 aa13.87□□□□□ -0.19
NPIPB3-212ENST00000543368 DCAF5Q96JK2 942 aa13.87□□□□□ -0.19
NPIPB3-212ENST00000543368 CFAP53Q96M91 514 aa13.87□□□□□ -0.19
NPIPB3-212ENST00000543368 TMOD3Q9NYL9 352 aa13.87□□□□□ -0.19
NPIPB3-212ENST00000543368 PPP1R1BQ9UD71 204 aaPredicted RBP13.87□□□□□ -0.19
NPIPB3-212ENST00000543368 ERVV-2B6SEH9 535 aa13.86□□□□□ -0.19
NPIPB3-212ENST00000543368 SULT6B1Q6IMI4 303 aa13.86□□□□□ -0.19
NPIPB3-212ENST00000543368 SLC16A10Q8TF71 515 aa13.86□□□□□ -0.19
NPIPB3-212ENST00000543368 PALLDQ8WX93 1383 aa13.85□□□□□ -0.19
NPIPB3-212ENST00000543368 ZNF530Q6P9A1 599 aaPredicted RBP13.85□□□□□ -0.19
NPIPB3-212ENST00000543368 MTFR1LQ9H019 292 aa13.85□□□□□ -0.19
NPIPB3-212ENST00000543368 LRRC4BQ9NT99 713 aa13.85□□□□□ -0.19
NPIPB3-212ENST00000543368 PAPPAQ13219 1627 aa13.85□□□□□ -0.19
NPIPB3-212ENST00000543368 FLAD1Q8NFF5 587 aa13.84□□□□□ -0.19
NPIPB3-212ENST00000543368 AKT1S1Q96B36 256 aa13.84□□□□□ -0.19
NPIPB3-212ENST00000543368 TFCP2L1Q9NZI6 479 aa13.84□□□□□ -0.19
NPIPB3-212ENST00000543368 PIGBQ92521 554 aa13.83□□□□□ -0.2
NPIPB3-212ENST00000543368 NUDCQ9Y266 331 aa13.83□□□□□ -0.2
NPIPB3-212ENST00000543368 LY75O60449 1722 aa13.83□□□□□ -0.2
NPIPB3-212ENST00000543368 DCAF8L1A6NGE4 600 aa13.82□□□□□ -0.2
NPIPB3-212ENST00000543368 AKAP4Q5JQC9 854 aa13.82□□□□□ -0.2
NPIPB3-212ENST00000543368 CASZ1Q86V15 1759 aa13.81□□□□□ -0.2
NPIPB3-212ENST00000543368 ZEB1P37275 1124 aaPredicted RBP13.81□□□□□ -0.2
NPIPB3-212ENST00000543368 CABP4P57796 275 aa13.81□□□□□ -0.2
NPIPB3-212ENST00000543368 ZNF827Q17R98 1081 aa13.81□□□□□ -0.2
NPIPB3-212ENST00000543368 AEBP1Q8IUX7 1158 aa13.81□□□□□ -0.2
NPIPB3-212ENST00000543368 ZBTB7AO95365 584 aa13.8□□□□□ -0.2
NPIPB3-212ENST00000543368 QSER1Q2KHR3 1735 aa13.79□□□□□ -0.2
NPIPB3-212ENST00000543368 LOC102724428A0A0B4J2F2 783 aa13.79□□□□□ -0.2
NPIPB3-212ENST00000543368 POLD1P28340 1107 aa13.79□□□□□ -0.2
NPIPB3-212ENST00000543368 SIK1P57059 783 aa13.79□□□□□ -0.2
NPIPB3-212ENST00000543368 TOGARAM1Q9Y4F4 1720 aa13.78□□□□□ -0.2
NPIPB3-212ENST00000543368 U2SURPO15042 1029 aaKnown RBP13.78□□□□□ -0.2
NPIPB3-212ENST00000543368 CNGB1Q14028 1251 aaPredicted RBP13.78□□□□□ -0.2
NPIPB3-212ENST00000543368 GAS2L2Q8NHY3 880 aa13.78□□□□□ -0.2
NPIPB3-212ENST00000543368 AK7Q96M32 723 aa13.78□□□□□ -0.2
NPIPB3-212ENST00000543368 ITGB4P16144 1822 aa13.78□□□□□ -0.2
NPIPB3-212ENST00000543368 HMOX1P09601 288 aa13.77□□□□□ -0.21
NPIPB3-212ENST00000543368 PPP2R1AP30153 589 aa13.77□□□□□ -0.21
NPIPB3-212ENST00000543368 PNPLA7Q6ZV29 1317 aa13.77□□□□□ -0.21
NPIPB3-212ENST00000543368 ATF5Q9Y2D1 282 aaPredicted RBP13.77□□□□□ -0.21
NPIPB3-212ENST00000543368 COL3A1P02461 1466 aaPredicted RBP13.76□□□□□ -0.21
NPIPB3-212ENST00000543368 ATP6V1AP38606 617 aa13.76□□□□□ -0.21
NPIPB3-212ENST00000543368 PTGER2P43116 358 aa13.76□□□□□ -0.21
NPIPB3-212ENST00000543368 ATG3Q9NT62 314 aa13.76□□□□□ -0.21
NPIPB3-212ENST00000543368 ASAP1Q9ULH1 1129 aa13.76□□□□□ -0.21
NPIPB3-212ENST00000543368 KDM6AO15550 1401 aaPredicted RBP13.75□□□□□ -0.21
NPIPB3-212ENST00000543368 NEFMP07197 916 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms