RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 SPDYE6P0CI01 402 aa7.05□□□□□ -1.28
LIMS1-214ENST00000542845 SPDYE2Q495Y8 402 aa7.05□□□□□ -1.28
LIMS1-214ENST00000542845 MPHOSPH9Q99550 1183 aa7.05□□□□□ -1.28
LIMS1-214ENST00000542845 CDCA7Q9BWT1 371 aaPredicted RBP7.05□□□□□ -1.28
LIMS1-214ENST00000542845 WNK3Q9BYP7 1800 aa7.05□□□□□ -1.28
LIMS1-214ENST00000542845 PNPLA7Q6ZV29 1317 aa7.04□□□□□ -1.28
LIMS1-214ENST00000542845 WDR17Q8IZU2 1322 aa7.04□□□□□ -1.28
LIMS1-214ENST00000542845 BTAF1O14981 1849 aa7.04□□□□□ -1.28
LIMS1-214ENST00000542845 KIF3CO14782 793 aa7.04□□□□□ -1.28
LIMS1-214ENST00000542845 POTEIP0CG38 1075 aa7.04□□□□□ -1.28
LIMS1-214ENST00000542845 PAXIP1Q6ZW49 1069 aaPredicted RBP7.04□□□□□ -1.28
LIMS1-214ENST00000542845 VSIG10Q8N0Z9 540 aa7.04□□□□□ -1.28
LIMS1-214ENST00000542845 SPDYE1Q8NFV5 336 aaPredicted RBP7.04□□□□□ -1.28
LIMS1-214ENST00000542845 USP19O94966 1318 aa7.03□□□□□ -1.28
LIMS1-214ENST00000542845 USP6P35125 1406 aa7.03□□□□□ -1.28
LIMS1-214ENST00000542845 SYTL4Q96C24 671 aaPredicted RBP7.03□□□□□ -1.28
LIMS1-214ENST00000542845 CARD10Q9BWT7 1032 aa7.03□□□□□ -1.28
LIMS1-214ENST00000542845 CCDC61Q9Y6R9 512 aa7.03□□□□□ -1.28
LIMS1-214ENST00000542845 BRD4O60885 1362 aaPredicted RBP7.03□□□□□ -1.28
LIMS1-214ENST00000542845 AATKQ6ZMQ8 1374 aa7.03□□□□□ -1.28
LIMS1-214ENST00000542845 NHSQ6T4R5 1651 aa7.03□□□□□ -1.28
LIMS1-214ENST00000542845 PAPPAQ13219 1627 aa7.02□□□□□ -1.29
LIMS1-214ENST00000542845 TUBGCP6Q96RT7 1819 aa7.02□□□□□ -1.29
LIMS1-214ENST00000542845 TOMM70O94826 608 aa7.02□□□□□ -1.29
LIMS1-214ENST00000542845 SRPK2P78362 688 aaKnown RBP7.02□□□□□ -1.29
LIMS1-214ENST00000542845 MIER1Q8N108 512 aa7.02□□□□□ -1.29
LIMS1-214ENST00000542845 DDX54Q8TDD1 881 aaKnown RBP7.02□□□□□ -1.29
LIMS1-214ENST00000542845 DCAF11Q8TEB1 546 aa7.02□□□□□ -1.29
LIMS1-214ENST00000542845 BBXQ8WY36 941 aaPredicted RBP7.02□□□□□ -1.29
LIMS1-214ENST00000542845 POLR3AO14802 1390 aaPredicted RBP7.02□□□□□ -1.29
LIMS1-214ENST00000542845 BCL9O00512 1426 aa7.01□□□□□ -1.29
LIMS1-214ENST00000542845 GOLGB1Q14789 3259 aaKnown RBP7.01□□□□□ -1.29
LIMS1-214ENST00000542845 PLEKHG3A1L390 1219 aa7.01□□□□□ -1.29
LIMS1-214ENST00000542845 CHADLQ6NUI6 762 aa7.01□□□□□ -1.29
LIMS1-214ENST00000542845 C16orf71Q8IYS4 520 aaPredicted RBP7.01□□□□□ -1.29
LIMS1-214ENST00000542845 KLRG1Q96E93 195 aa7.01□□□□□ -1.29
LIMS1-214ENST00000542845 NLRP2Q9NX02 1062 aa7.01□□□□□ -1.29
LIMS1-214ENST00000542845 WDR90Q96KV7 1748 aa7.01□□□□□ -1.29
LIMS1-214ENST00000542845 COL18A1P39060 1754 aa7□□□□□ -1.29
LIMS1-214ENST00000542845 ADCY9O60503 1353 aa7□□□□□ -1.29
LIMS1-214ENST00000542845 SLC27A3Q5K4L6 730 aa7□□□□□ -1.29
LIMS1-214ENST00000542845 COL23A1Q86Y22 540 aaPredicted RBP7□□□□□ -1.29
LIMS1-214ENST00000542845 CABP2Q9NPB3 220 aa7□□□□□ -1.29
LIMS1-214ENST00000542845 CIZ1Q9ULV3 898 aaPredicted RBP7□□□□□ -1.29
LIMS1-214ENST00000542845 QSER1Q2KHR3 1735 aa7□□□□□ -1.29
LIMS1-214ENST00000542845 ADGRB1O14514 1584 aa6.99□□□□□ -1.29
LIMS1-214ENST00000542845 COL24A1Q17RW2 1714 aa6.99□□□□□ -1.29
LIMS1-214ENST00000542845 NMRK2Q9NPI5 230 aa6.99□□□□□ -1.29
LIMS1-214ENST00000542845 CABP1Q9NZU7 370 aa6.99□□□□□ -1.29
LIMS1-214ENST00000542845 CD2APQ9Y5K6 639 aa6.99□□□□□ -1.29
LIMS1-214ENST00000542845 PPIP5K1Q6PFW1 1433 aa6.99□□□□□ -1.29
LIMS1-214ENST00000542845 IGSF1Q8N6C5 1336 aa6.99□□□□□ -1.29
LIMS1-214ENST00000542845 ARHGEF28Q8N1W1 1705 aaKnown RBP6.98□□□□□ -1.29
LIMS1-214ENST00000542845 CCDC7Q96M83 1385 aa6.98□□□□□ -1.29
LIMS1-214ENST00000542845 SLC34A2O95436 690 aa6.98□□□□□ -1.29
LIMS1-214ENST00000542845 PRKCSHP14314 528 aaPredicted RBP6.98□□□□□ -1.29
LIMS1-214ENST00000542845 IL2RBP14784 551 aa6.98□□□□□ -1.29
LIMS1-214ENST00000542845 PRIM1P49642 420 aaKnown RBP6.98□□□□□ -1.29
LIMS1-214ENST00000542845 ARHGEF25Q86VW2 580 aa6.98□□□□□ -1.29
LIMS1-214ENST00000542845 CCNL1Q9UK58 526 aaPredicted RBP6.98□□□□□ -1.29
LIMS1-214ENST00000542845 TNS2Q63HR2 1409 aa6.98□□□□□ -1.29
LIMS1-214ENST00000542845 CPSF1Q10570 1443 aaKnown RBP6.97□□□□□ -1.29
LIMS1-214ENST00000542845 ARHGAP27Q6ZUM4 889 aa6.97□□□□□ -1.29
LIMS1-214ENST00000542845 JMYQ8N9B5 988 aa6.97□□□□□ -1.29
LIMS1-214ENST00000542845 KCNH5Q8NCM2 988 aa6.97□□□□□ -1.29
LIMS1-214ENST00000542845 TAOK2Q9UL54 1235 aa6.97□□□□□ -1.29
LIMS1-214ENST00000542845 RGL2O15211 777 aa6.96□□□□□ -1.3
LIMS1-214ENST00000542845 HSPA1AP0DMV8 641 aaKnown RBP6.96□□□□□ -1.3
LIMS1-214ENST00000542845 HSPA1BP0DMV9 641 aaKnown RBP6.96□□□□□ -1.3
LIMS1-214ENST00000542845 SLIT3O75094 1523 aa6.96□□□□□ -1.3
LIMS1-214ENST00000542845 PHF14O94880 888 aa6.95□□□□□ -1.3
LIMS1-214ENST00000542845 SMIM5Q71RC9 77 aa6.95□□□□□ -1.3
LIMS1-214ENST00000542845 RBM46Q8TBY0 533 aaKnown RBP6.95□□□□□ -1.3
LIMS1-214ENST00000542845 LTV1Q96GA3 475 aaPredicted RBP6.95□□□□□ -1.3
LIMS1-214ENST00000542845 RRAGCQ9HB90 399 aa6.95□□□□□ -1.3
LIMS1-214ENST00000542845 BCS1LQ9Y276 419 aa6.95□□□□□ -1.3
LIMS1-214ENST00000542845 TRPM1Q7Z4N2 1603 aa6.94□□□□□ -1.3
LIMS1-214ENST00000542845 PIK3C2AO00443 1686 aa6.94□□□□□ -1.3
LIMS1-214ENST00000542845 TPRNQ4KMQ1 711 aa6.94□□□□□ -1.3
LIMS1-214ENST00000542845 SPRYD3Q8NCJ5 442 aa6.94□□□□□ -1.3
LIMS1-214ENST00000542845 ANKRD24Q8TF21 1146 aa6.94□□□□□ -1.3
LIMS1-214ENST00000542845 ZBTB47Q9UFB7 747 aaPredicted RBP6.94□□□□□ -1.3
LIMS1-214ENST00000542845 ABCC6O95255 1503 aa6.94□□□□□ -1.3
LIMS1-214ENST00000542845 A0A0G2JLW4 131 aa6.93□□□□□ -1.3
LIMS1-214ENST00000542845 FSTL1Q12841 308 aa6.93□□□□□ -1.3
LIMS1-214ENST00000542845 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.93□□□□□ -1.3
LIMS1-214ENST00000542845 TTC21BQ7Z4L5 1316 aa6.93□□□□□ -1.3
LIMS1-214ENST00000542845 USP47Q96K76 1375 aa6.93□□□□□ -1.3
LIMS1-214ENST00000542845 LY75O60449 1722 aa6.93□□□□□ -1.3
LIMS1-214ENST00000542845 DOT1LQ8TEK3 1739 aa6.93□□□□□ -1.3
LIMS1-214ENST00000542845 N4BP2Q86UW6 1770 aaPredicted RBP6.92□□□□□ -1.3
LIMS1-214ENST00000542845 C9orf131Q5VYM1 1079 aa6.92□□□□□ -1.3
LIMS1-214ENST00000542845 FLAD1Q8NFF5 587 aa6.92□□□□□ -1.3
LIMS1-214ENST00000542845 AK7Q96M32 723 aa6.92□□□□□ -1.3
LIMS1-214ENST00000542845 SSUH2Q9Y2M2 353 aa6.92□□□□□ -1.3
LIMS1-214ENST00000542845 QRICH2Q9H0J4 1663 aa6.91□□□□□ -1.3
LIMS1-214ENST00000542845 FCHSD2O94868 740 aa6.91□□□□□ -1.3
LIMS1-214ENST00000542845 NBPF1Q3BBV0 1214 aa6.91□□□□□ -1.3
LIMS1-214ENST00000542845 ERBB3P21860 1342 aa6.91□□□□□ -1.3
LIMS1-214ENST00000542845 CENPJQ9HC77 1338 aaPredicted RBP6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms