RNA–Protein interactions for RNA: ENST00000542786.1

LDB3-207, Transcript of LIM domain binding 3, humanhuman

TSL 2 BASIC

Gene LDB3, Length 1,889 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-207ENST00000542786 C14orf37Q86TY3 774 aa18.06■□□□□ 0.48
LDB3-207ENST00000542786 GAS2L2Q8NHY3 880 aa18.06■□□□□ 0.48
LDB3-207ENST00000542786 RWDD1Q9H446 243 aaPredicted RBP18.06■□□□□ 0.48
LDB3-207ENST00000542786 RGS12O14924 1447 aa18.06■□□□□ 0.48
LDB3-207ENST00000542786 DCCP43146 1447 aa18.06■□□□□ 0.48
LDB3-207ENST00000542786 NCOA3Q9Y6Q9 1424 aa18.06■□□□□ 0.48
LDB3-207ENST00000542786 HTATSF1O43719 755 aaKnown RBP18.05■□□□□ 0.48
LDB3-207ENST00000542786 C19orf44Q9H6X5 657 aa18.05■□□□□ 0.48
LDB3-207ENST00000542786 ALS2Q96Q42 1657 aa18.05■□□□□ 0.48
LDB3-207ENST00000542786 KRT24Q2M2I5 525 aa18.05■□□□□ 0.48
LDB3-207ENST00000542786 VIRMAQ69YN4 1812 aaKnown RBP18.04■□□□□ 0.48
LDB3-207ENST00000542786 ANP32AP39687 249 aaKnown RBP18.04■□□□□ 0.48
LDB3-207ENST00000542786 KCNH5Q8NCM2 988 aa18.04■□□□□ 0.48
LDB3-207ENST00000542786 TMEM94Q12767 1356 aa18.03■□□□□ 0.48
LDB3-207ENST00000542786 PDZRN3Q9UPQ7 1066 aa18.03■□□□□ 0.48
LDB3-207ENST00000542786 CAMTA1Q9Y6Y1 1673 aa18.03■□□□□ 0.48
LDB3-207ENST00000542786 IPO9Q96P70 1041 aaKnown RBP18.03■□□□□ 0.48
LDB3-207ENST00000542786 ZBTB7BO15156 539 aaPredicted RBP18.02■□□□□ 0.48
LDB3-207ENST00000542786 ARHGEF25Q86VW2 580 aa18.02■□□□□ 0.48
LDB3-207ENST00000542786 ANP32EQ9BTT0 268 aa18.02■□□□□ 0.48
LDB3-207ENST00000542786 MAP3K5Q99683 1374 aa18.01■□□□□ 0.47
LDB3-207ENST00000542786 XPCQ01831 940 aaPredicted RBP18.01■□□□□ 0.47
LDB3-207ENST00000542786 SMC5Q8IY18 1101 aa18.01■□□□□ 0.47
LDB3-207ENST00000542786 MED1Q15648 1581 aaPredicted RBP18.01■□□□□ 0.47
LDB3-207ENST00000542786 RGPD2P0DJD1 1756 aa18■□□□□ 0.47
LDB3-207ENST00000542786 GCP02774 474 aa18■□□□□ 0.47
LDB3-207ENST00000542786 LTV1Q96GA3 475 aaPredicted RBP18■□□□□ 0.47
LDB3-207ENST00000542786 API5Q9BZZ5 524 aaKnown RBP18■□□□□ 0.47
LDB3-207ENST00000542786 NBPF6Q5VWK0 638 aa17.99■□□□□ 0.47
LDB3-207ENST00000542786 KRT28Q7Z3Y7 464 aa17.99■□□□□ 0.47
LDB3-207ENST00000542786 NBPF4Q96M43 638 aa17.99■□□□□ 0.47
LDB3-207ENST00000542786 GNAT3A8MTJ3 354 aa17.99■□□□□ 0.47
LDB3-207ENST00000542786 USHBP1Q8N6Y0 703 aa17.99■□□□□ 0.47
LDB3-207ENST00000542786 IL17REQ8NFR9 667 aa17.99■□□□□ 0.47
LDB3-207ENST00000542786 RTF1Q92541 710 aaKnown RBP17.99■□□□□ 0.47
LDB3-207ENST00000542786 HAP1P54257 671 aaPredicted RBP17.98■□□□□ 0.47
LDB3-207ENST00000542786 MIS18AQ9NYP9 233 aa17.98■□□□□ 0.47
LDB3-207ENST00000542786 LMO7Q8WWI1 1683 aa17.98■□□□□ 0.47
LDB3-207ENST00000542786 XIRP1Q702N8 1843 aaKnown RBP17.97■□□□□ 0.47
LDB3-207ENST00000542786 CEMIPQ8WUJ3 1361 aa17.97■□□□□ 0.47
LDB3-207ENST00000542786 NOP58Q9Y2X3 529 aaKnown RBP17.97■□□□□ 0.47
LDB3-207ENST00000542786 LMTK3Q96Q04 1460 aa17.96■□□□□ 0.47
LDB3-207ENST00000542786 KDM4FA0A1W2PPD8 638 aa17.96■□□□□ 0.47
LDB3-207ENST00000542786 INTS3Q68E01 1043 aaKnown RBP17.96■□□□□ 0.47
LDB3-207ENST00000542786 TSPYL4Q9UJ04 414 aa17.96■□□□□ 0.47
LDB3-207ENST00000542786 FAM208AQ9UK61 1670 aaKnown RBP17.96■□□□□ 0.47
LDB3-207ENST00000542786 HSPA2P54652 639 aa17.95■□□□□ 0.46
LDB3-207ENST00000542786 BABAM1Q9NWV8 329 aa17.95■□□□□ 0.46
LDB3-207ENST00000542786 STRCQ7RTU9 1775 aa17.95■□□□□ 0.46
LDB3-207ENST00000542786 NPM2Q86SE8 214 aaKnown RBP17.95■□□□□ 0.46
LDB3-207ENST00000542786 CHMP4BQ9H444 224 aaKnown RBP17.95■□□□□ 0.46
LDB3-207ENST00000542786 PTPRCP08575 1304 aa17.94■□□□□ 0.46
LDB3-207ENST00000542786 PXDNQ92626 1479 aa17.93■□□□□ 0.46
LDB3-207ENST00000542786 CRYBG1Q9Y4K1 1723 aa17.93■□□□□ 0.46
LDB3-207ENST00000542786 SIRT2Q8IXJ6 389 aa17.93■□□□□ 0.46
LDB3-207ENST00000542786 LRRC59Q96AG4 307 aaKnown RBP17.93■□□□□ 0.46
LDB3-207ENST00000542786 ATF3P18847 181 aa17.92■□□□□ 0.46
LDB3-207ENST00000542786 COL18A1P39060 1754 aa17.92■□□□□ 0.46
LDB3-207ENST00000542786 SOS1Q07889 1333 aaPredicted RBP17.92■□□□□ 0.46
LDB3-207ENST00000542786 KDM3BQ7LBC6 1761 aa17.91■□□□□ 0.46
LDB3-207ENST00000542786 NUCB1Q02818 461 aa17.91■□□□□ 0.46
LDB3-207ENST00000542786 ATP10DQ9P241 1426 aa17.91■□□□□ 0.46
LDB3-207ENST00000542786 TAF7Q15545 349 aaPredicted RBP17.9■□□□□ 0.46
LDB3-207ENST00000542786 AXIN2Q9Y2T1 843 aa17.9■□□□□ 0.46
LDB3-207ENST00000542786 ADAMTS7Q9UKP4 1686 aa17.9■□□□□ 0.46
LDB3-207ENST00000542786 ANKRD24Q8TF21 1146 aa17.9■□□□□ 0.46
LDB3-207ENST00000542786 C1orf115Q9H7X2 142 aa17.9■□□□□ 0.46
LDB3-207ENST00000542786 RGPD5Q99666 1765 aa17.9■□□□□ 0.46
LDB3-207ENST00000542786 G2E3Q7L622 706 aa17.89■□□□□ 0.45
LDB3-207ENST00000542786 CADPS2Q86UW7 1296 aa17.89■□□□□ 0.45
LDB3-207ENST00000542786 OVOS2A0A0G2JMS6 1433 aa17.89■□□□□ 0.45
LDB3-207ENST00000542786 TNS3Q68CZ2 1445 aa17.89■□□□□ 0.45
LDB3-207ENST00000542786 ABCC6O95255 1503 aa17.89■□□□□ 0.45
LDB3-207ENST00000542786 SLC4A2P04920 1241 aa17.88■□□□□ 0.45
LDB3-207ENST00000542786 DDX17Q92841 729 aaKnown RBP17.88■□□□□ 0.45
LDB3-207ENST00000542786 ZBTB7CA1YPR0 619 aa17.88■□□□□ 0.45
LDB3-207ENST00000542786 SEC24BO95487 1268 aa17.88■□□□□ 0.45
LDB3-207ENST00000542786 LMOD2Q6P5Q4 547 aa17.87■□□□□ 0.45
LDB3-207ENST00000542786 N4BP2Q86UW6 1770 aaPredicted RBP17.87■□□□□ 0.45
LDB3-207ENST00000542786 LGR6Q9HBX8 967 aa17.86■□□□□ 0.45
LDB3-207ENST00000542786 ZBTB47Q9UFB7 747 aaPredicted RBP17.86■□□□□ 0.45
LDB3-207ENST00000542786 ERBB3P21860 1342 aa17.86■□□□□ 0.45
LDB3-207ENST00000542786 NPHP3Q7Z494 1330 aa17.86■□□□□ 0.45
LDB3-207ENST00000542786 AKAP4Q5JQC9 854 aa17.86■□□□□ 0.45
LDB3-207ENST00000542786 PLEKHO1Q53GL0 409 aaPredicted RBP17.85■□□□□ 0.45
LDB3-207ENST00000542786 GCC1Q96CN9 775 aa17.85■□□□□ 0.45
LDB3-207ENST00000542786 CACNA1FO60840 1977 aa17.84■□□□□ 0.45
LDB3-207ENST00000542786 AMOTQ4VCS5 1084 aa17.84■□□□□ 0.45
LDB3-207ENST00000542786 ZNF530Q6P9A1 599 aaPredicted RBP17.84■□□□□ 0.45
LDB3-207ENST00000542786 ERICH6Q7L0X2 663 aa17.84■□□□□ 0.45
LDB3-207ENST00000542786 CHD1LQ86WJ1 897 aa17.84■□□□□ 0.45
LDB3-207ENST00000542786 SIPA1L3O60292 1781 aaPredicted RBP17.84■□□□□ 0.45
LDB3-207ENST00000542786 SPATA31A3Q5VYP0 1347 aa17.84■□□□□ 0.45
LDB3-207ENST00000542786 CCDC30Q5VVM6 783 aa17.83■□□□□ 0.44
LDB3-207ENST00000542786 ANKRD44Q8N8A2 993 aa17.83■□□□□ 0.44
LDB3-207ENST00000542786 DDRGK1Q96HY6 314 aa17.83■□□□□ 0.44
LDB3-207ENST00000542786 RNMTO43148 476 aaKnown RBP17.82■□□□□ 0.44
LDB3-207ENST00000542786 PLEKHG5O94827 1062 aa17.82■□□□□ 0.44
LDB3-207ENST00000542786 EIF4A1P60842 406 aaKnown RBP17.82■□□□□ 0.44
LDB3-207ENST00000542786 ZC3H6P61129 1189 aaKnown RBP17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms