RNA–Protein interactions for RNA: ENST00000542310.1

VPS33A-206, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 756 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-206ENST00000542310 EIF4G2P78344 907 aaKnown RBP eCLIP21.67■■□□□ 1.06
VPS33A-206ENST00000542310 CCER1Q8TC90 406 aaPredicted RBP21.67■■□□□ 1.06
VPS33A-206ENST00000542310 STK32BQ9NY57 414 aa21.66■■□□□ 1.06
VPS33A-206ENST00000542310 NBPF6Q5VWK0 638 aa21.65■■□□□ 1.06
VPS33A-206ENST00000542310 ZCRB1Q8TBF4 217 aaKnown RBP21.65■■□□□ 1.06
VPS33A-206ENST00000542310 NBPF4Q96M43 638 aa21.65■■□□□ 1.06
VPS33A-206ENST00000542310 SLC15A2Q16348 729 aa21.64■■□□□ 1.05
VPS33A-206ENST00000542310 DDX54Q8TDD1 881 aaKnown RBP21.64■■□□□ 1.05
VPS33A-206ENST00000542310 HSP90AB2PQ58FF8 381 aa21.63■■□□□ 1.05
VPS33A-206ENST00000542310 RAPGEF4Q8WZA2 1011 aa21.63■■□□□ 1.05
VPS33A-206ENST00000542310 NSD2O96028 1365 aa21.62■■□□□ 1.05
VPS33A-206ENST00000542310 HSPA5P11021 654 aaKnown RBP21.61■■□□□ 1.05
VPS33A-206ENST00000542310 SLC27A3Q5K4L6 730 aa21.61■■□□□ 1.05
VPS33A-206ENST00000542310 PCDH11XQ9BZA7 1347 aa21.6■■□□□ 1.05
VPS33A-206ENST00000542310 PCDH11YQ9BZA8 1340 aa21.6■■□□□ 1.05
VPS33A-206ENST00000542310 TUBGCP6Q96RT7 1819 aa21.6■■□□□ 1.05
VPS33A-206ENST00000542310 TATP17735 454 aaPredicted RBP21.6■■□□□ 1.05
VPS33A-206ENST00000542310 PPP1R1BQ9UD71 204 aaPredicted RBP21.6■■□□□ 1.05
VPS33A-206ENST00000542310 EMILIN1Q9Y6C2 1016 aa21.6■■□□□ 1.05
VPS33A-206ENST00000542310 USHBP1Q8N6Y0 703 aa21.59■■□□□ 1.05
VPS33A-206ENST00000542310 WASHC2AQ641Q2 1341 aa21.58■■□□□ 1.05
VPS33A-206ENST00000542310 TOGARAM1Q9Y4F4 1720 aa21.58■■□□□ 1.05
VPS33A-206ENST00000542310 PLEKHG2Q9H7P9 1386 aa21.58■■□□□ 1.04
VPS33A-206ENST00000542310 COL24A1Q17RW2 1714 aa21.58■■□□□ 1.04
VPS33A-206ENST00000542310 ITGB4P16144 1822 aa21.57■■□□□ 1.04
VPS33A-206ENST00000542310 PRIM1P49642 420 aaKnown RBP21.56■■□□□ 1.04
VPS33A-206ENST00000542310 PDGFDQ9GZP0 370 aaPredicted RBP21.56■■□□□ 1.04
VPS33A-206ENST00000542310 LRRC4BQ9NT99 713 aa21.56■■□□□ 1.04
VPS33A-206ENST00000542310 SYTL4Q96C24 671 aaPredicted RBP21.55■■□□□ 1.04
VPS33A-206ENST00000542310 POLR3GLQ9BT43 218 aa21.55■■□□□ 1.04
VPS33A-206ENST00000542310 MTFR1LQ9H019 292 aa21.55■■□□□ 1.04
VPS33A-206ENST00000542310 C5P01031 1676 aa21.54■■□□□ 1.04
VPS33A-206ENST00000542310 ZBTB7AO95365 584 aa21.54■■□□□ 1.04
VPS33A-206ENST00000542310 PTGER2P43116 358 aa21.53■■□□□ 1.04
VPS33A-206ENST00000542310 ZNF827Q17R98 1081 aa21.53■■□□□ 1.04
VPS33A-206ENST00000542310 POLKQ9UBT6 870 aa21.53■■□□□ 1.04
VPS33A-206ENST00000542310 TAF1LQ8IZX4 1826 aa21.52■■□□□ 1.04
VPS33A-206ENST00000542310 AKT1S1Q96B36 256 aa21.52■■□□□ 1.04
VPS33A-206ENST00000542310 PPM1GO15355 546 aaPredicted RBP21.51■■□□□ 1.03
VPS33A-206ENST00000542310 PANK3Q9H999 370 aa21.5■■□□□ 1.03
VPS33A-206ENST00000542310 SGIP1Q9BQI5 828 aa21.49■■□□□ 1.03
VPS33A-206ENST00000542310 CYP27B1O15528 508 aa21.48■■□□□ 1.03
VPS33A-206ENST00000542310 HMGB2P26583 209 aaKnown RBP21.48■■□□□ 1.03
VPS33A-206ENST00000542310 EYA1Q99502 592 aa21.48■■□□□ 1.03
VPS33A-206ENST00000542310 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.48■■□□□ 1.03
VPS33A-206ENST00000542310 SLC16A10Q8TF71 515 aa21.47■■□□□ 1.03
VPS33A-206ENST00000542310 SPG7Q9UQ90 795 aa21.47■■□□□ 1.03
VPS33A-206ENST00000542310 ATF5Q9Y2D1 282 aaPredicted RBP21.47■■□□□ 1.03
VPS33A-206ENST00000542310 MAP3K5Q99683 1374 aa21.47■■□□□ 1.03
VPS33A-206ENST00000542310 NKX1-1Q15270 411 aaPredicted RBP21.46■■□□□ 1.03
VPS33A-206ENST00000542310 CCNL1Q9UK58 526 aaPredicted RBP21.46■■□□□ 1.03
VPS33A-206ENST00000542310 EIF4A2Q14240 407 aaKnown RBP21.45■■□□□ 1.02
VPS33A-206ENST00000542310 PNPLA7Q6ZV29 1317 aa21.45■■□□□ 1.02
VPS33A-206ENST00000542310 IGSF1Q8N6C5 1336 aa21.45■■□□□ 1.02
VPS33A-206ENST00000542310 PALLDQ8WX93 1383 aa21.45■■□□□ 1.02
VPS33A-206ENST00000542310 DCAF8L1A6NGE4 600 aa21.44■■□□□ 1.02
VPS33A-206ENST00000542310 C4BP0C0L5 1744 aa21.43■■□□□ 1.02
VPS33A-206ENST00000542310 TNNT2P45379 298 aaPredicted RBP21.42■■□□□ 1.02
VPS33A-206ENST00000542310 TFCP2L1Q9NZI6 479 aa21.42■■□□□ 1.02
VPS33A-206ENST00000542310 KIF7Q2M1P5 1343 aa21.41■■□□□ 1.02
VPS33A-206ENST00000542310 SMARCC1Q92922 1105 aaPredicted RBP21.41■■□□□ 1.02
VPS33A-206ENST00000542310 KNSTRNQ9Y448 316 aa21.41■■□□□ 1.02
VPS33A-206ENST00000542310 KCNQ4P56696 695 aa21.4■■□□□ 1.02
VPS33A-206ENST00000542310 ARXQ96QS3 562 aa21.4■■□□□ 1.02
VPS33A-206ENST00000542310 FHDC1Q9C0D6 1143 aaPredicted RBP21.4■■□□□ 1.02
VPS33A-206ENST00000542310 UBR3Q6ZT12 1888 aa21.4■■□□□ 1.02
VPS33A-206ENST00000542310 MPRIPQ6WCQ1 1025 aa21.39■■□□□ 1.01
VPS33A-206ENST00000542310 MORC1Q86VD1 984 aa21.39■■□□□ 1.01
VPS33A-206ENST00000542310 IFNL2Q8IZJ0 200 aa21.39■■□□□ 1.01
VPS33A-206ENST00000542310 ZNF831Q5JPB2 1677 aa21.39■■□□□ 1.01
VPS33A-206ENST00000542310 PHKG2P15735 406 aa21.38■■□□□ 1.01
VPS33A-206ENST00000542310 SYT17Q9BSW7 474 aa21.38■■□□□ 1.01
VPS33A-206ENST00000542310 POLD1P28340 1107 aa21.36■■□□□ 1.01
VPS33A-206ENST00000542310 AMER1Q5JTC6 1135 aaPredicted RBP21.36■■□□□ 1.01
VPS33A-206ENST00000542310 PIGBQ92521 554 aa21.36■■□□□ 1.01
VPS33A-206ENST00000542310 CHD4Q14839 1912 aa21.35■■□□□ 1.01
VPS33A-206ENST00000542310 KDRP35968 1356 aa21.35■■□□□ 1.01
VPS33A-206ENST00000542310 FLAD1Q8NFF5 587 aa21.34■■□□□ 1.01
VPS33A-206ENST00000542310 TMOD3Q9NYL9 352 aa21.34■■□□□ 1.01
VPS33A-206ENST00000542310 HSP90AB1P08238 724 aaKnown RBP21.33■■□□□ 1.01
VPS33A-206ENST00000542310 YY1P25490 414 aa21.32■■□□□ 1
VPS33A-206ENST00000542310 AMOTQ4VCS5 1084 aa21.32■■□□□ 1
VPS33A-206ENST00000542310 PLEKHO1Q53GL0 409 aaPredicted RBP21.31■■□□□ 1
VPS33A-206ENST00000542310 COL23A1Q86Y22 540 aaPredicted RBP21.31■■□□□ 1
VPS33A-206ENST00000542310 COL5A3P25940 1745 aaPredicted RBP21.31■■□□□ 1
VPS33A-206ENST00000542310 SCN11AQ9UI33 1791 aa21.31■■□□□ 1
VPS33A-206ENST00000542310 UTRNP46939 3433 aa21.3■■□□□ 1
VPS33A-206ENST00000542310 LOC102724428A0A0B4J2F2 783 aa21.3■■□□□ 1
VPS33A-206ENST00000542310 SIK1P57059 783 aa21.3■■□□□ 1
VPS33A-206ENST00000542310 NPC1L1Q9UHC9 1359 aa21.3■■□□□ 1
VPS33A-206ENST00000542310 KDM6AO15550 1401 aaPredicted RBP21.29■■□□□ 1
VPS33A-206ENST00000542310 CICQ96RK0 1608 aaPredicted RBP21.29■■□□□ 1
VPS33A-206ENST00000542310 ERVV-2B6SEH9 535 aa21.29■■□□□ 1
VPS33A-206ENST00000542310 DCAF5Q96JK2 942 aa21.29■■□□□ 1
VPS33A-206ENST00000542310 AK7Q96M32 723 aa21.29■■□□□ 1
VPS33A-206ENST00000542310 VIRMAQ69YN4 1812 aaKnown RBP21.29■■□□□ 1
VPS33A-206ENST00000542310 PER1O15534 1290 aaPredicted RBP21.27■■□□□ 1
VPS33A-206ENST00000542310 IL13P35225 146 aa21.27■■□□□ 1
VPS33A-206ENST00000542310 MSH5O43196 834 aa21.26■□□□□ 0.99
VPS33A-206ENST00000542310 ZNF530Q6P9A1 599 aaPredicted RBP21.26■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms