RNA–Protein interactions for RNA: ENST00000542133.5

NPIPB4-215, Transcript of nuclear pore complex interacting protein family member B4, human

TSL 3

Gene NPIPB4, Length 910 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPIPB4-215	ENST00000542133	CCDC61	Q9Y6R9	512 aa		11.29	□□□□□ -0.6
NPIPB4-215	ENST00000542133	PIK3C2A	O00443	1686 aa		11.29	□□□□□ -0.6
NPIPB4-215	ENST00000542133	BRD4	O60885	1362 aa	Predicted RBP	11.28	□□□□□ -0.6
NPIPB4-215	ENST00000542133	HAX1	O00165	279 aa		11.28	□□□□□ -0.6
NPIPB4-215	ENST00000542133	GRIN3B	O60391	1043 aa		11.28	□□□□□ -0.6
NPIPB4-215	ENST00000542133	SLC16A10	Q8TF71	515 aa		11.28	□□□□□ -0.6
NPIPB4-215	ENST00000542133	GPBP1L1	Q9HC44	474 aa	Predicted RBP	11.28	□□□□□ -0.6
NPIPB4-215	ENST00000542133	RGPD5	Q99666	1765 aa		11.28	□□□□□ -0.6
NPIPB4-215	ENST00000542133	AXIN2	Q9Y2T1	843 aa		11.27	□□□□□ -0.61
NPIPB4-215	ENST00000542133	PNPLA7	Q6ZV29	1317 aa		11.27	□□□□□ -0.61
NPIPB4-215	ENST00000542133	PPIP5K1	Q6PFW1	1433 aa		11.26	□□□□□ -0.61
NPIPB4-215	ENST00000542133	CARD10	Q9BWT7	1032 aa		11.26	□□□□□ -0.61
NPIPB4-215	ENST00000542133	LRRC4B	Q9NT99	713 aa		11.26	□□□□□ -0.61
NPIPB4-215	ENST00000542133	QRICH2	Q9H0J4	1663 aa		11.26	□□□□□ -0.61
NPIPB4-215	ENST00000542133	USP6	P35125	1406 aa		11.26	□□□□□ -0.61
NPIPB4-215	ENST00000542133	EXOC5	O00471	708 aa		11.25	□□□□□ -0.61
NPIPB4-215	ENST00000542133	ACSBG1	Q96GR2	724 aa		11.25	□□□□□ -0.61
NPIPB4-215	ENST00000542133	CCDC7	Q96M83	1385 aa		11.25	□□□□□ -0.61
NPIPB4-215	ENST00000542133	ZNF526	Q8TF50	670 aa	Predicted RBP	11.24	□□□□□ -0.61
NPIPB4-215	ENST00000542133	NLRP6	P59044	892 aa		11.23	□□□□□ -0.61
NPIPB4-215	ENST00000542133	SP7	Q8TDD2	431 aa	Predicted RBP	11.23	□□□□□ -0.61
NPIPB4-215	ENST00000542133	NFAT5	O94916	1531 aa		11.22	□□□□□ -0.61
NPIPB4-215	ENST00000542133	CSB-PGBD3	P0DP91	1061 aa		11.22	□□□□□ -0.61
NPIPB4-215	ENST00000542133	PRKAR2A	P13861	404 aa	Known RBP	11.22	□□□□□ -0.61
NPIPB4-215	ENST00000542133	ARHGEF25	Q86VW2	580 aa		11.21	□□□□□ -0.61
NPIPB4-215	ENST00000542133	LY75	O60449	1722 aa		11.21	□□□□□ -0.62
NPIPB4-215	ENST00000542133	KIF3C	O14782	793 aa		11.2	□□□□□ -0.62
NPIPB4-215	ENST00000542133	APLP1	P51693	650 aa		11.2	□□□□□ -0.62
NPIPB4-215	ENST00000542133	SLC27A3	Q5K4L6	730 aa		11.2	□□□□□ -0.62
NPIPB4-215	ENST00000542133	KDM2A	Q9Y2K7	1162 aa		11.2	□□□□□ -0.62
NPIPB4-215	ENST00000542133	WDR90	Q96KV7	1748 aa		11.2	□□□□□ -0.62
NPIPB4-215	ENST00000542133	DNAJC5G	Q8N7S2	189 aa		11.19	□□□□□ -0.62
NPIPB4-215	ENST00000542133	DCAF11	Q8TEB1	546 aa		11.19	□□□□□ -0.62
NPIPB4-215	ENST00000542133	TFCP2L1	Q9NZI6	479 aa		11.19	□□□□□ -0.62
NPIPB4-215	ENST00000542133	KIAA1210	Q9ULL0	1709 aa		11.18	□□□□□ -0.62
NPIPB4-215	ENST00000542133	CIC	Q96RK0	1608 aa	Predicted RBP	11.18	□□□□□ -0.62
NPIPB4-215	ENST00000542133	SRPK2	P78362	688 aa	Known RBP	11.18	□□□□□ -0.62
NPIPB4-215	ENST00000542133	COL13A1	Q5TAT6	717 aa	Predicted RBP	11.18	□□□□□ -0.62
NPIPB4-215	ENST00000542133	DOT1L	Q8TEK3	1739 aa		11.18	□□□□□ -0.62
NPIPB4-215	ENST00000542133	KCNH5	Q8NCM2	988 aa		11.17	□□□□□ -0.62
NPIPB4-215	ENST00000542133	ERBB3	P21860	1342 aa		11.16	□□□□□ -0.62
NPIPB4-215	ENST00000542133	SOX12	O15370	315 aa		11.16	□□□□□ -0.62
NPIPB4-215	ENST00000542133	PRR29	P0C7W0	189 aa		11.16	□□□□□ -0.62
NPIPB4-215	ENST00000542133	KCNQ4	P56696	695 aa		11.16	□□□□□ -0.62
NPIPB4-215	ENST00000542133	STAC3	Q96MF2	364 aa		11.16	□□□□□ -0.62
NPIPB4-215	ENST00000542133	BCL11A	Q9H165	835 aa		11.16	□□□□□ -0.62
NPIPB4-215	ENST00000542133	CABP2	Q9NPB3	220 aa		11.16	□□□□□ -0.62
NPIPB4-215	ENST00000542133	CD2AP	Q9Y5K6	639 aa		11.16	□□□□□ -0.62
NPIPB4-215	ENST00000542133	KAT6B	Q8WYB5	2073 aa		11.15	□□□□□ -0.62
NPIPB4-215	ENST00000542133	IL2RB	P14784	551 aa		11.15	□□□□□ -0.62
NPIPB4-215	ENST00000542133	PRELP	P51888	382 aa		11.15	□□□□□ -0.62
NPIPB4-215	ENST00000542133	CABP1	Q9NZU7	370 aa		11.15	□□□□□ -0.62
NPIPB4-215	ENST00000542133	NSD2	O96028	1365 aa		11.15	□□□□□ -0.63
NPIPB4-215	ENST00000542133	USP54	Q70EL1	1684 aa		11.14	□□□□□ -0.63
NPIPB4-215	ENST00000542133	TMEM132A	Q24JP5	1023 aa		11.14	□□□□□ -0.63
NPIPB4-215	ENST00000542133	MSL1	Q68DK7	614 aa		11.14	□□□□□ -0.63
NPIPB4-215	ENST00000542133	COL23A1	Q86Y22	540 aa	Predicted RBP	11.14	□□□□□ -0.63
NPIPB4-215	ENST00000542133	LTN1	O94822	1766 aa		11.13	□□□□□ -0.63
NPIPB4-215	ENST00000542133	TNS4	Q8IZW8	715 aa		11.13	□□□□□ -0.63
NPIPB4-215	ENST00000542133	C5	P01031	1676 aa		11.13	□□□□□ -0.63
NPIPB4-215	ENST00000542133	TTC21B	Q7Z4L5	1316 aa		11.12	□□□□□ -0.63
NPIPB4-215	ENST00000542133	CENPJ	Q9HC77	1338 aa	Predicted RBP	11.12	□□□□□ -0.63
NPIPB4-215	ENST00000542133	TOMM70	O94826	608 aa		11.12	□□□□□ -0.63
NPIPB4-215	ENST00000542133	CHADL	Q6NUI6	762 aa		11.12	□□□□□ -0.63
NPIPB4-215	ENST00000542133	JMY	Q8N9B5	988 aa		11.12	□□□□□ -0.63
NPIPB4-215	ENST00000542133	NLRP2	Q9NX02	1062 aa		11.12	□□□□□ -0.63
NPIPB4-215	ENST00000542133	ANKRD36B	Q8N2N9	1353 aa		11.12	□□□□□ -0.63
NPIPB4-215	ENST00000542133	IGSF1	Q8N6C5	1336 aa		11.11	□□□□□ -0.63
NPIPB4-215	ENST00000542133	KLRG1	Q96E93	195 aa		11.11	□□□□□ -0.63
NPIPB4-215	ENST00000542133	MON2	Q7Z3U7	1717 aa		11.11	□□□□□ -0.63
NPIPB4-215	ENST00000542133	FAM208A	Q9UK61	1670 aa	Known RBP	11.11	□□□□□ -0.63
NPIPB4-215	ENST00000542133	PCNT	O95613	3336 aa		11.11	□□□□□ -0.63
NPIPB4-215	ENST00000542133	TTC21A	Q8NDW8	1320 aa		11.1	□□□□□ -0.63
NPIPB4-215	ENST00000542133	TOGARAM1	Q9Y4F4	1720 aa		11.1	□□□□□ -0.63
NPIPB4-215	ENST00000542133	CCNL1	Q9UK58	526 aa	Predicted RBP	11.1	□□□□□ -0.63
NPIPB4-215	ENST00000542133	WWC3	Q9ULE0	1092 aa		11.1	□□□□□ -0.63
NPIPB4-215	ENST00000542133	SLC34A2	O95436	690 aa		11.09	□□□□□ -0.63
NPIPB4-215	ENST00000542133	HTRA3	P83110	453 aa		11.09	□□□□□ -0.63
NPIPB4-215	ENST00000542133	SYTL4	Q96C24	671 aa	Predicted RBP	11.09	□□□□□ -0.63
NPIPB4-215	ENST00000542133	TAF1L	Q8IZX4	1826 aa		11.08	□□□□□ -0.64
NPIPB4-215	ENST00000542133	DDX54	Q8TDD1	881 aa	Known RBP	11.08	□□□□□ -0.64
NPIPB4-215	ENST00000542133	KIAA1551	Q9HCM1	1747 aa		11.07	□□□□□ -0.64
NPIPB4-215	ENST00000542133	PRIM1	P49642	420 aa	Known RBP	11.07	□□□□□ -0.64
NPIPB4-215	ENST00000542133	NBPF1	Q3BBV0	1214 aa		11.07	□□□□□ -0.64
NPIPB4-215	ENST00000542133	ANKRD24	Q8TF21	1146 aa		11.07	□□□□□ -0.64
NPIPB4-215	ENST00000542133	USP31	Q70CQ4	1352 aa		11.06	□□□□□ -0.64
NPIPB4-215	ENST00000542133	RAB3GAP2	Q9H2M9	1393 aa		11.06	□□□□□ -0.64
NPIPB4-215	ENST00000542133	RBM46	Q8TBY0	533 aa	Known RBP	11.06	□□□□□ -0.64
NPIPB4-215	ENST00000542133	NMRK2	Q9NPI5	230 aa		11.06	□□□□□ -0.64
NPIPB4-215	ENST00000542133	USP47	Q96K76	1375 aa		11.05	□□□□□ -0.64
NPIPB4-215	ENST00000542133	C4B	P0C0L5	1744 aa		11.05	□□□□□ -0.64
NPIPB4-215	ENST00000542133	EVX2	Q03828	476 aa		11.05	□□□□□ -0.64
NPIPB4-215	ENST00000542133	UBR3	Q6ZT12	1888 aa		11.05	□□□□□ -0.64
NPIPB4-215	ENST00000542133	KTN1	Q86UP2	1357 aa	Known RBP	11.04	□□□□□ -0.64
NPIPB4-215	ENST00000542133	VSIG10	Q8N0Z9	540 aa		11.04	□□□□□ -0.64
NPIPB4-215	ENST00000542133	FLAD1	Q8NFF5	587 aa		11.04	□□□□□ -0.64
NPIPB4-215	ENST00000542133	PXDNL	A1KZ92	1463 aa		11.04	□□□□□ -0.64
NPIPB4-215	ENST00000542133	KIF13B	Q9NQT8	1826 aa		11.04	□□□□□ -0.64
NPIPB4-215	ENST00000542133	MEGF6	O75095	1541 aa		11.04	□□□□□ -0.64
NPIPB4-215	ENST00000542133	PKD1L3	Q7Z443	1732 aa		11.04	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms