RNA–Protein interactions for RNA: ENST00000541990.5

THBS3-211, Transcript of thrombospondin 3, humanhuman

TSL 1 (best) BASIC

Gene THBS3, Length 2,928 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
THBS3-211ENST00000541990 SHPRHQ149N8 1683 aa11.41□□□□□ -0.58
THBS3-211ENST00000541990 DDX11L8A8MPP1 907 aa11.41□□□□□ -0.58
THBS3-211ENST00000541990 KRT24Q2M2I5 525 aa11.41□□□□□ -0.58
THBS3-211ENST00000541990 SSH2Q76I76 1423 aa11.41□□□□□ -0.58
THBS3-211ENST00000541990 NCOA3Q9Y6Q9 1424 aa11.41□□□□□ -0.58
THBS3-211ENST00000541990 MAP2P11137 1827 aaKnown RBP11.41□□□□□ -0.58
THBS3-211ENST00000541990 STRCP1A6NGW2 1772 aa11.4□□□□□ -0.58
THBS3-211ENST00000541990 GCP02774 474 aa11.4□□□□□ -0.58
THBS3-211ENST00000541990 FTSJ3Q8IY81 847 aaKnown RBP11.4□□□□□ -0.58
THBS3-211ENST00000541990 COL3A1P02461 1466 aaPredicted RBP11.4□□□□□ -0.58
THBS3-211ENST00000541990 OVOS2A0A0J9YW53 1432 aa11.4□□□□□ -0.59
THBS3-211ENST00000541990 OVOS2Q6IE36 1432 aa11.4□□□□□ -0.59
THBS3-211ENST00000541990 TRIM27P14373 513 aa11.39□□□□□ -0.59
THBS3-211ENST00000541990 HOXC9P31274 260 aa11.39□□□□□ -0.59
THBS3-211ENST00000541990 DZIP1LQ8IYY4 767 aaKnown RBP11.39□□□□□ -0.59
THBS3-211ENST00000541990 TRIM44Q96DX7 344 aaPredicted RBP11.39□□□□□ -0.59
THBS3-211ENST00000541990 C1orf167Q5SNV9 1468 aa11.39□□□□□ -0.59
THBS3-211ENST00000541990 PNPLA6Q8IY17 1366 aa11.39□□□□□ -0.59
THBS3-211ENST00000541990 BRINP3Q76B58 766 aa11.39□□□□□ -0.59
THBS3-211ENST00000541990 ITPRIPQ8IWB1 547 aa11.39□□□□□ -0.59
THBS3-211ENST00000541990 ZKSCAN2Q63HK3 967 aa11.39□□□□□ -0.59
THBS3-211ENST00000541990 RBM42Q9BTD8 480 aaKnown RBP11.39□□□□□ -0.59
THBS3-211ENST00000541990 SLAIN2Q9P270 581 aa11.39□□□□□ -0.59
THBS3-211ENST00000541990 PIP4K2BP78356 416 aa11.38□□□□□ -0.59
THBS3-211ENST00000541990 EXOSC9Q06265 439 aaKnown RBP11.38□□□□□ -0.59
THBS3-211ENST00000541990 NBPF6Q5VWK0 638 aa11.38□□□□□ -0.59
THBS3-211ENST00000541990 KIAA1211Q6ZU35 1233 aa11.38□□□□□ -0.59
THBS3-211ENST00000541990 NBPF4Q96M43 638 aa11.38□□□□□ -0.59
THBS3-211ENST00000541990 LNPKQ9C0E8 428 aa11.38□□□□□ -0.59
THBS3-211ENST00000541990 NGEFQ8N5V2 710 aa11.37□□□□□ -0.59
THBS3-211ENST00000541990 KIF2CQ99661 725 aa11.37□□□□□ -0.59
THBS3-211ENST00000541990 SMC4Q9NTJ3 1288 aa11.37□□□□□ -0.59
THBS3-211ENST00000541990 ADGRB2O60241 1585 aa11.37□□□□□ -0.59
THBS3-211ENST00000541990 FCHSD2O94868 740 aa11.37□□□□□ -0.59
THBS3-211ENST00000541990 SSFA2P28290 1259 aa11.37□□□□□ -0.59
THBS3-211ENST00000541990 TTC21AQ8NDW8 1320 aa11.37□□□□□ -0.59
THBS3-211ENST00000541990 HSP90AB1P08238 724 aaKnown RBP11.36□□□□□ -0.59
THBS3-211ENST00000541990 RBM10P98175 930 aaKnown RBP11.36□□□□□ -0.59
THBS3-211ENST00000541990 RAB3GAP1Q15042 981 aa11.36□□□□□ -0.59
THBS3-211ENST00000541990 MTHFSDQ2M296 383 aaKnown RBP11.36□□□□□ -0.59
THBS3-211ENST00000541990 CADPS2Q86UW7 1296 aa11.36□□□□□ -0.59
THBS3-211ENST00000541990 WDR63Q8IWG1 891 aa11.36□□□□□ -0.59
THBS3-211ENST00000541990 TSPYL6Q8N831 410 aa11.36□□□□□ -0.59
THBS3-211ENST00000541990 SSH1Q8WYL5 1049 aa11.36□□□□□ -0.59
THBS3-211ENST00000541990 MSH6P52701 1360 aa11.36□□□□□ -0.59
THBS3-211ENST00000541990 TMEM57Q8N5G2 664 aa11.36□□□□□ -0.59
THBS3-211ENST00000541990 KIF20BQ96Q89 1820 aa11.36□□□□□ -0.59
THBS3-211ENST00000541990 SMC5Q8IY18 1101 aa11.36□□□□□ -0.59
THBS3-211ENST00000541990 RBM25P49756 843 aaKnown RBP11.35□□□□□ -0.59
THBS3-211ENST00000541990 AAMPQ13685 434 aa11.35□□□□□ -0.59
THBS3-211ENST00000541990 MST1RQ04912 1400 aa11.35□□□□□ -0.59
THBS3-211ENST00000541990 ITSN1Q15811 1721 aa11.35□□□□□ -0.59
THBS3-211ENST00000541990 HDAC1Q13547 482 aaPredicted RBP11.35□□□□□ -0.59
THBS3-211ENST00000541990 NECTIN2Q92692 538 aa11.35□□□□□ -0.59
THBS3-211ENST00000541990 NOB1Q9ULX3 412 aaKnown RBP11.34□□□□□ -0.59
THBS3-211ENST00000541990 AATKQ6ZMQ8 1374 aa11.34□□□□□ -0.59
THBS3-211ENST00000541990 ANKARQ7Z5J8 1434 aa11.34□□□□□ -0.59
THBS3-211ENST00000541990 MON2Q7Z3U7 1717 aa11.34□□□□□ -0.59
THBS3-211ENST00000541990 HAP1P54257 671 aaPredicted RBP11.34□□□□□ -0.59
THBS3-211ENST00000541990 GAS2L2Q8NHY3 880 aa11.34□□□□□ -0.59
THBS3-211ENST00000541990 PEAK1Q9H792 1746 aa11.33□□□□□ -0.59
THBS3-211ENST00000541990 FMN2Q9NZ56 1722 aa11.33□□□□□ -0.59
THBS3-211ENST00000541990 PIK3C2AO00443 1686 aa11.33□□□□□ -0.59
THBS3-211ENST00000541990 TOPAZ1Q8N9V7 1692 aa11.33□□□□□ -0.59
THBS3-211ENST00000541990 LRRC7Q96NW7 1537 aa11.33□□□□□ -0.6
THBS3-211ENST00000541990 USP31Q70CQ4 1352 aa11.33□□□□□ -0.6
THBS3-211ENST00000541990 NASPP49321 788 aaPredicted RBP11.33□□□□□ -0.6
THBS3-211ENST00000541990 NFE2L2Q16236 605 aa11.33□□□□□ -0.6
THBS3-211ENST00000541990 SNX21Q969T3 373 aa11.33□□□□□ -0.6
THBS3-211ENST00000541990 AKAP12Q02952 1782 aa11.33□□□□□ -0.6
THBS3-211ENST00000541990 ZNF428Q96B54 188 aa11.33□□□□□ -0.6
THBS3-211ENST00000541990 ARID3AQ99856 593 aa11.33□□□□□ -0.6
THBS3-211ENST00000541990 TPM2P07951 284 aa11.32□□□□□ -0.6
THBS3-211ENST00000541990 GBP4Q96PP9 640 aa11.32□□□□□ -0.6
THBS3-211ENST00000541990 C1orf115Q9H7X2 142 aa11.32□□□□□ -0.6
THBS3-211ENST00000541990 ATF7IPQ6VMQ6 1270 aa11.32□□□□□ -0.6
THBS3-211ENST00000541990 NLRP2Q9NX02 1062 aa11.32□□□□□ -0.6
THBS3-211ENST00000541990 ISY1Q9ULR0 285 aaKnown RBP11.32□□□□□ -0.6
THBS3-211ENST00000541990 FLT4P35916 1363 aa11.32□□□□□ -0.6
THBS3-211ENST00000541990 CSB-PGBD3P0DP91 1061 aa11.32□□□□□ -0.6
THBS3-211ENST00000541990 ANKRD24Q8TF21 1146 aa11.32□□□□□ -0.6
THBS3-211ENST00000541990 CCDC27Q2M243 656 aa11.31□□□□□ -0.6
THBS3-211ENST00000541990 ARHGEF25Q86VW2 580 aa11.31□□□□□ -0.6
THBS3-211ENST00000541990 CHAMP1Q96JM3 812 aa11.31□□□□□ -0.6
THBS3-211ENST00000541990 STRN4Q9NRL3 753 aa11.31□□□□□ -0.6
THBS3-211ENST00000541990 MBIPQ9NS73 344 aa11.31□□□□□ -0.6
THBS3-211ENST00000541990 C8orf58Q8NAV2 365 aa11.31□□□□□ -0.6
THBS3-211ENST00000541990 FBXO41Q8TF61 875 aa11.31□□□□□ -0.6
THBS3-211ENST00000541990 PPP1R9BQ96SB3 815 aa11.31□□□□□ -0.6
THBS3-211ENST00000541990 ZBTB40Q9NUA8 1239 aa11.31□□□□□ -0.6
THBS3-211ENST00000541990 DDX19BQ9UMR2 479 aa11.31□□□□□ -0.6
THBS3-211ENST00000541990 SBNO1A3KN83 1393 aa11.31□□□□□ -0.6
THBS3-211ENST00000541990 NUCB1Q02818 461 aa11.3□□□□□ -0.6
THBS3-211ENST00000541990 ZSCAN30Q86W11 494 aa11.3□□□□□ -0.6
THBS3-211ENST00000541990 IP6K1Q92551 441 aa11.3□□□□□ -0.6
THBS3-211ENST00000541990 LGR6Q9HBX8 967 aa11.3□□□□□ -0.6
THBS3-211ENST00000541990 NRKQ7Z2Y5 1582 aa11.3□□□□□ -0.6
THBS3-211ENST00000541990 CCDC173Q0VFZ6 552 aa11.3□□□□□ -0.6
THBS3-211ENST00000541990 PKP1Q13835 747 aa11.3□□□□□ -0.6
THBS3-211ENST00000541990 CERKQ8TCT0 537 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms