RNA–Protein interactions for RNA: ENST00000541576.5

THBS3-210, Transcript of thrombospondin 3, humanhuman

TSL 1 (best) BASIC

Gene THBS3, Length 3,200 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
THBS3-210ENST00000541576 IFT57Q9NWB7 429 aa11.24□□□□□ -0.61
THBS3-210ENST00000541576 LAS1LQ9Y4W2 734 aaKnown RBP11.24□□□□□ -0.61
THBS3-210ENST00000541576 BCAR3O75815 825 aa11.23□□□□□ -0.61
THBS3-210ENST00000541576 PIP4K2BP78356 416 aa11.23□□□□□ -0.61
THBS3-210ENST00000541576 RTF1Q92541 710 aaKnown RBP11.23□□□□□ -0.61
THBS3-210ENST00000541576 NLRP2Q9NX02 1062 aa11.23□□□□□ -0.61
THBS3-210ENST00000541576 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.23□□□□□ -0.61
THBS3-210ENST00000541576 CAMTA1Q9Y6Y1 1673 aa11.23□□□□□ -0.61
THBS3-210ENST00000541576 B4GALNT3Q6L9W6 998 aa11.23□□□□□ -0.61
THBS3-210ENST00000541576 MCM10Q7L590 875 aa11.23□□□□□ -0.61
THBS3-210ENST00000541576 UBAP1LF5GYI3 381 aa11.22□□□□□ -0.61
THBS3-210ENST00000541576 EXOSC9Q06265 439 aaKnown RBP11.22□□□□□ -0.61
THBS3-210ENST00000541576 CFAP44Q96MT7 982 aa11.22□□□□□ -0.61
THBS3-210ENST00000541576 HTATSF1O43719 755 aaKnown RBP11.22□□□□□ -0.61
THBS3-210ENST00000541576 CT47B1P0C2W7 299 aaPredicted RBP11.22□□□□□ -0.61
THBS3-210ENST00000541576 ZNF853P0CG23 659 aa11.22□□□□□ -0.61
THBS3-210ENST00000541576 C20orf194Q5TEA3 1177 aa11.22□□□□□ -0.61
THBS3-210ENST00000541576 LMO7Q8WWI1 1683 aa11.21□□□□□ -0.61
THBS3-210ENST00000541576 GNAT3A8MTJ3 354 aa11.21□□□□□ -0.61
THBS3-210ENST00000541576 PPP4R2Q9NY27 417 aa11.21□□□□□ -0.61
THBS3-210ENST00000541576 FAM208AQ9UK61 1670 aaKnown RBP11.21□□□□□ -0.61
THBS3-210ENST00000541576 PHLPP1O60346 1717 aa11.21□□□□□ -0.62
THBS3-210ENST00000541576 PLEKHO1Q53GL0 409 aaPredicted RBP11.21□□□□□ -0.62
THBS3-210ENST00000541576 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.21□□□□□ -0.62
THBS3-210ENST00000541576 MAP3K5Q99683 1374 aa11.21□□□□□ -0.62
THBS3-210ENST00000541576 RARSP54136 660 aaKnown RBP11.2□□□□□ -0.62
THBS3-210ENST00000541576 AMOTQ4VCS5 1084 aa11.2□□□□□ -0.62
THBS3-210ENST00000541576 EXOC6Q8TAG9 804 aa11.2□□□□□ -0.62
THBS3-210ENST00000541576 MBIPQ9NS73 344 aa11.2□□□□□ -0.62
THBS3-210ENST00000541576 RAPGEF4Q8WZA2 1011 aa11.2□□□□□ -0.62
THBS3-210ENST00000541576 COL16A1Q07092 1604 aaPredicted RBP11.2□□□□□ -0.62
THBS3-210ENST00000541576 COL22A1Q8NFW1 1626 aaPredicted RBP11.2□□□□□ -0.62
THBS3-210ENST00000541576 CRB1P82279 1406 aa11.19□□□□□ -0.62
THBS3-210ENST00000541576 WDR17Q8IZU2 1322 aa11.19□□□□□ -0.62
THBS3-210ENST00000541576 COL5A2P05997 1499 aaPredicted RBP11.19□□□□□ -0.62
THBS3-210ENST00000541576 ZNF530Q6P9A1 599 aaPredicted RBP11.18□□□□□ -0.62
THBS3-210ENST00000541576 CHL1O00533 1208 aa11.18□□□□□ -0.62
THBS3-210ENST00000541576 BCL2L13Q9BXK5 485 aa11.18□□□□□ -0.62
THBS3-210ENST00000541576 TATP17735 454 aaPredicted RBP11.18□□□□□ -0.62
THBS3-210ENST00000541576 TOM1L2Q6ZVM7 507 aa11.18□□□□□ -0.62
THBS3-210ENST00000541576 CRBNQ96SW2 442 aa11.18□□□□□ -0.62
THBS3-210ENST00000541576 AKAP4Q5JQC9 854 aa11.17□□□□□ -0.62
THBS3-210ENST00000541576 IL17REQ8NFR9 667 aa11.17□□□□□ -0.62
THBS3-210ENST00000541576 CERKQ8TCT0 537 aa11.17□□□□□ -0.62
THBS3-210ENST00000541576 C1orf141Q5JVX7 400 aa11.17□□□□□ -0.62
THBS3-210ENST00000541576 EVA1CP58658 441 aa11.16□□□□□ -0.62
THBS3-210ENST00000541576 STRN4Q9NRL3 753 aa11.16□□□□□ -0.62
THBS3-210ENST00000541576 LRRC37A3O60309 1634 aa11.16□□□□□ -0.62
THBS3-210ENST00000541576 CANXP27824 592 aaKnown RBP11.16□□□□□ -0.62
THBS3-210ENST00000541576 TSPYL6Q8N831 410 aa11.16□□□□□ -0.62
THBS3-210ENST00000541576 PLEKHG2Q9H7P9 1386 aa11.16□□□□□ -0.62
THBS3-210ENST00000541576 MEGF6O75095 1541 aa11.16□□□□□ -0.62
THBS3-210ENST00000541576 ZNF428Q96B54 188 aa11.16□□□□□ -0.62
THBS3-210ENST00000541576 NPM2Q86SE8 214 aaKnown RBP11.15□□□□□ -0.62
THBS3-210ENST00000541576 SSH1Q8WYL5 1049 aa11.15□□□□□ -0.62
THBS3-210ENST00000541576 SMC4Q9NTJ3 1288 aa11.15□□□□□ -0.62
THBS3-210ENST00000541576 BTG4Q9NY30 223 aa11.15□□□□□ -0.62
THBS3-210ENST00000541576 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.15□□□□□ -0.62
THBS3-210ENST00000541576 TSPYL4Q9UJ04 414 aa11.15□□□□□ -0.62
THBS3-210ENST00000541576 COL14A1Q05707 1796 aaKnown RBP11.15□□□□□ -0.62
THBS3-210ENST00000541576 C8orf58Q8NAV2 365 aa11.15□□□□□ -0.62
THBS3-210ENST00000541576 FRAT1Q92837 279 aaPredicted RBP11.15□□□□□ -0.62
THBS3-210ENST00000541576 CARD10Q9BWT7 1032 aa11.15□□□□□ -0.62
THBS3-210ENST00000541576 MIS18AQ9NYP9 233 aa11.15□□□□□ -0.62
THBS3-210ENST00000541576 SPG7Q9UQ90 795 aa11.15□□□□□ -0.62
THBS3-210ENST00000541576 CEMIPQ8WUJ3 1361 aa11.15□□□□□ -0.62
THBS3-210ENST00000541576 ELL2O00472 640 aaPredicted RBP11.14□□□□□ -0.63
THBS3-210ENST00000541576 VAMP4O75379 141 aa11.14□□□□□ -0.63
THBS3-210ENST00000541576 TWISTNBQ3B726 338 aaPredicted RBP11.14□□□□□ -0.63
THBS3-210ENST00000541576 LARP1Q6PKG0 1096 aaKnown RBP11.14□□□□□ -0.63
THBS3-210ENST00000541576 MPRIPQ6WCQ1 1025 aa11.14□□□□□ -0.63
THBS3-210ENST00000541576 TNNQ9UQP3 1299 aa11.14□□□□□ -0.63
THBS3-210ENST00000541576 TAF7Q15545 349 aaPredicted RBP11.14□□□□□ -0.63
THBS3-210ENST00000541576 ALDH1L2Q3SY69 923 aa11.14□□□□□ -0.63
THBS3-210ENST00000541576 RTL5Q5HYW3 569 aaPredicted RBP11.14□□□□□ -0.63
THBS3-210ENST00000541576 LGR6Q9HBX8 967 aa11.14□□□□□ -0.63
THBS3-210ENST00000541576 BABAM1Q9NWV8 329 aa11.13□□□□□ -0.63
THBS3-210ENST00000541576 ADAMTS2O95450 1211 aa11.13□□□□□ -0.63
THBS3-210ENST00000541576 KRT24Q2M2I5 525 aa11.13□□□□□ -0.63
THBS3-210ENST00000541576 IL27Q8NEV9 243 aa11.13□□□□□ -0.63
THBS3-210ENST00000541576 RNMTO43148 476 aaKnown RBP11.13□□□□□ -0.63
THBS3-210ENST00000541576 TEFQ10587 303 aa11.13□□□□□ -0.63
THBS3-210ENST00000541576 PDE3AQ14432 1141 aa11.13□□□□□ -0.63
THBS3-210ENST00000541576 PANK1Q8TE04 598 aa11.13□□□□□ -0.63
THBS3-210ENST00000541576 OVOS2A0A0G2JMS6 1433 aa11.12□□□□□ -0.63
THBS3-210ENST00000541576 NUTM2BA6NNL0 878 aaPredicted RBP11.12□□□□□ -0.63
THBS3-210ENST00000541576 NUTM2EB1AL46 878 aaPredicted RBP11.12□□□□□ -0.63
THBS3-210ENST00000541576 NUTM2AQ8IVF1 878 aaPredicted RBP11.12□□□□□ -0.63
THBS3-210ENST00000541576 IFNL2Q8IZJ0 200 aa11.12□□□□□ -0.63
THBS3-210ENST00000541576 RLBP1P12271 317 aa11.11□□□□□ -0.63
THBS3-210ENST00000541576 IL2RBP14784 551 aa11.11□□□□□ -0.63
THBS3-210ENST00000541576 PHKG2P15735 406 aa11.11□□□□□ -0.63
THBS3-210ENST00000541576 ZKSCAN2Q63HK3 967 aa11.11□□□□□ -0.63
THBS3-210ENST00000541576 PKD1L3Q7Z443 1732 aa11.11□□□□□ -0.63
THBS3-210ENST00000541576 PARP4Q9UKK3 1724 aaKnown RBP11.11□□□□□ -0.63
THBS3-210ENST00000541576 KIF16BQ96L93 1317 aa11.11□□□□□ -0.63
THBS3-210ENST00000541576 JCADQ9P266 1359 aa11.11□□□□□ -0.63
THBS3-210ENST00000541576 TCERG1O14776 1098 aaKnown RBP11.11□□□□□ -0.63
THBS3-210ENST00000541576 USP35Q9P2H5 1018 aa11.11□□□□□ -0.63
THBS3-210ENST00000541576 BRPF1P55201 1214 aaPredicted RBP11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms