RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 JCADQ9P266 1359 aa23.05■■□□□ 1.28
CLIP1-215ENST00000541108 NEFLP07196 543 aa23.04■■□□□ 1.28
CLIP1-215ENST00000541108 ZNF853P0CG23 659 aa23.04■■□□□ 1.28
CLIP1-215ENST00000541108 FANCIQ9NVI1 1328 aa23.04■■□□□ 1.28
CLIP1-215ENST00000541108 CT47B1P0C2W7 299 aaPredicted RBP23.03■■□□□ 1.28
CLIP1-215ENST00000541108 TOM1L2Q6ZVM7 507 aa23.03■■□□□ 1.28
CLIP1-215ENST00000541108 CARD10Q9BWT7 1032 aa23.03■■□□□ 1.28
CLIP1-215ENST00000541108 MAP3K5Q99683 1374 aa23.03■■□□□ 1.28
CLIP1-215ENST00000541108 THUMPD2Q9BTF0 503 aaKnown RBP23.03■■□□□ 1.28
CLIP1-215ENST00000541108 BTG4Q9NY30 223 aa23.03■■□□□ 1.28
CLIP1-215ENST00000541108 TATP17735 454 aaPredicted RBP23.02■■□□□ 1.28
CLIP1-215ENST00000541108 DCTN1Q14203 1278 aa23.02■■□□□ 1.28
CLIP1-215ENST00000541108 AKAP4Q5JQC9 854 aa23.01■■□□□ 1.27
CLIP1-215ENST00000541108 MCM10Q7L590 875 aa23.01■■□□□ 1.27
CLIP1-215ENST00000541108 TSR2Q969E8 191 aaKnown RBP23■■□□□ 1.27
CLIP1-215ENST00000541108 STRN4Q9NRL3 753 aa23■■□□□ 1.27
CLIP1-215ENST00000541108 SPG7Q9UQ90 795 aa22.99■■□□□ 1.27
CLIP1-215ENST00000541108 CRB1P82279 1406 aa22.99■■□□□ 1.27
CLIP1-215ENST00000541108 ZNF530Q6P9A1 599 aaPredicted RBP22.98■■□□□ 1.27
CLIP1-215ENST00000541108 LARP1Q6PKG0 1096 aaKnown RBP22.98■■□□□ 1.27
CLIP1-215ENST00000541108 CHL1O00533 1208 aa22.97■■□□□ 1.27
CLIP1-215ENST00000541108 C1orf141Q5JVX7 400 aa22.97■■□□□ 1.27
CLIP1-215ENST00000541108 LAS1LQ9Y4W2 734 aaKnown RBP22.97■■□□□ 1.27
CLIP1-215ENST00000541108 SPATA31A6Q5VVP1 1343 aa22.97■■□□□ 1.27
CLIP1-215ENST00000541108 MEGF6O75095 1541 aa22.97■■□□□ 1.27
CLIP1-215ENST00000541108 ADAMTS2O95450 1211 aa22.97■■□□□ 1.27
CLIP1-215ENST00000541108 IL17REQ8NFR9 667 aa22.97■■□□□ 1.27
CLIP1-215ENST00000541108 MBIPQ9NS73 344 aa22.97■■□□□ 1.27
CLIP1-215ENST00000541108 CEMIPQ8WUJ3 1361 aa22.96■■□□□ 1.27
CLIP1-215ENST00000541108 EXOSC9Q06265 439 aaKnown RBP22.96■■□□□ 1.27
CLIP1-215ENST00000541108 BABAM1Q9NWV8 329 aa22.96■■□□□ 1.27
CLIP1-215ENST00000541108 NUTM2BA6NNL0 878 aaPredicted RBP22.95■■□□□ 1.26
CLIP1-215ENST00000541108 NUTM2EB1AL46 878 aaPredicted RBP22.95■■□□□ 1.26
CLIP1-215ENST00000541108 NUTM2AQ8IVF1 878 aaPredicted RBP22.95■■□□□ 1.26
CLIP1-215ENST00000541108 OVOS2A0A0G2JMS6 1433 aa22.95■■□□□ 1.26
CLIP1-215ENST00000541108 RRP1P56182 461 aaKnown RBP22.94■■□□□ 1.26
CLIP1-215ENST00000541108 LRRC37A3O60309 1634 aa22.94■■□□□ 1.26
CLIP1-215ENST00000541108 IL2RBP14784 551 aa22.93■■□□□ 1.26
CLIP1-215ENST00000541108 FKBP8Q14318 412 aa22.93■■□□□ 1.26
CLIP1-215ENST00000541108 ZNF428Q96B54 188 aa22.93■■□□□ 1.26
CLIP1-215ENST00000541108 PARP4Q9UKK3 1724 aaKnown RBP22.93■■□□□ 1.26
CLIP1-215ENST00000541108 PLCH1Q4KWH8 1693 aa22.93■■□□□ 1.26
CLIP1-215ENST00000541108 ERICH6BQ5W0A0 696 aa22.93■■□□□ 1.26
CLIP1-215ENST00000541108 PKD1L3Q7Z443 1732 aa22.93■■□□□ 1.26
CLIP1-215ENST00000541108 HSPA1LP34931 641 aa22.92■■□□□ 1.26
CLIP1-215ENST00000541108 NWD2Q9ULI1 1742 aa22.92■■□□□ 1.26
CLIP1-215ENST00000541108 TAF7Q15545 349 aaPredicted RBP22.91■■□□□ 1.26
CLIP1-215ENST00000541108 IFNL2Q8IZJ0 200 aa22.91■■□□□ 1.26
CLIP1-215ENST00000541108 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.91■■□□□ 1.26
CLIP1-215ENST00000541108 SLIT2O94813 1529 aa22.9■■□□□ 1.26
CLIP1-215ENST00000541108 RARSP54136 660 aaKnown RBP22.9■■□□□ 1.26
CLIP1-215ENST00000541108 PHKG2P15735 406 aa22.9■■□□□ 1.26
CLIP1-215ENST00000541108 RNMTO43148 476 aaKnown RBP22.89■■□□□ 1.25
CLIP1-215ENST00000541108 HSP90AB1P08238 724 aaKnown RBP22.89■■□□□ 1.25
CLIP1-215ENST00000541108 LGR6Q9HBX8 967 aa22.89■■□□□ 1.25
CLIP1-215ENST00000541108 ADAMTS7Q9UKP4 1686 aa22.89■■□□□ 1.25
CLIP1-215ENST00000541108 NRAPQ86VF7 1730 aa22.88■■□□□ 1.25
CLIP1-215ENST00000541108 MPRIPQ6WCQ1 1025 aa22.88■■□□□ 1.25
CLIP1-215ENST00000541108 ZCRB1Q8TBF4 217 aaKnown RBP22.88■■□□□ 1.25
CLIP1-215ENST00000541108 TSPYL4Q9UJ04 414 aa22.87■■□□□ 1.25
CLIP1-215ENST00000541108 PCDH11XQ9BZA7 1347 aa22.87■■□□□ 1.25
CLIP1-215ENST00000541108 PCDH11YQ9BZA8 1340 aa22.87■■□□□ 1.25
CLIP1-215ENST00000541108 THRAP3Q9Y2W1 955 aaKnown RBP22.87■■□□□ 1.25
CLIP1-215ENST00000541108 CYP27B1O15528 508 aa22.86■■□□□ 1.25
CLIP1-215ENST00000541108 VAMP4O75379 141 aa22.86■■□□□ 1.25
CLIP1-215ENST00000541108 BCAR3O75815 825 aa22.86■■□□□ 1.25
CLIP1-215ENST00000541108 TEFQ10587 303 aa22.86■■□□□ 1.25
CLIP1-215ENST00000541108 ALDH1L2Q3SY69 923 aa22.86■■□□□ 1.25
CLIP1-215ENST00000541108 USP35Q9P2H5 1018 aa22.86■■□□□ 1.25
CLIP1-215ENST00000541108 VIRMAQ69YN4 1812 aaKnown RBP22.85■■□□□ 1.25
CLIP1-215ENST00000541108 DCAF5Q96JK2 942 aa22.85■■□□□ 1.25
CLIP1-215ENST00000541108 TWISTNBQ3B726 338 aaPredicted RBP22.84■■□□□ 1.25
CLIP1-215ENST00000541108 FNBP4Q8N3X1 1017 aaPredicted RBP22.84■■□□□ 1.25
CLIP1-215ENST00000541108 CDCA7Q9BWT1 371 aaPredicted RBP22.84■■□□□ 1.25
CLIP1-215ENST00000541108 UNC5CLQ8IV45 518 aa22.84■■□□□ 1.25
CLIP1-215ENST00000541108 C8orf58Q8NAV2 365 aa22.84■■□□□ 1.25
CLIP1-215ENST00000541108 NGLY1Q96IV0 654 aa22.84■■□□□ 1.25
CLIP1-215ENST00000541108 SPATA31A1Q5TZJ5 1347 aa22.83■■□□□ 1.25
CLIP1-215ENST00000541108 DISP2A7MBM2 1401 aa22.83■■□□□ 1.25
CLIP1-215ENST00000541108 IRX6P78412 446 aaPredicted RBP22.83■■□□□ 1.24
CLIP1-215ENST00000541108 MIS18AQ9NYP9 233 aa22.83■■□□□ 1.24
CLIP1-215ENST00000541108 SCN11AQ9UI33 1791 aa22.83■■□□□ 1.24
CLIP1-215ENST00000541108 BRPF1P55201 1214 aaPredicted RBP22.82■■□□□ 1.24
CLIP1-215ENST00000541108 NKX1-1Q15270 411 aaPredicted RBP22.82■■□□□ 1.24
CLIP1-215ENST00000541108 TSPYL6Q8N831 410 aa22.82■■□□□ 1.24
CLIP1-215ENST00000541108 SOS1Q07889 1333 aaPredicted RBP22.82■■□□□ 1.24
CLIP1-215ENST00000541108 C8orf37Q96NL8 207 aa22.81■■□□□ 1.24
CLIP1-215ENST00000541108 SPATA31A5Q5VU36 1347 aa22.81■■□□□ 1.24
CLIP1-215ENST00000541108 SPATA31A7Q8IWB4 1347 aa22.81■■□□□ 1.24
CLIP1-215ENST00000541108 KDM6AO15550 1401 aaPredicted RBP22.81■■□□□ 1.24
CLIP1-215ENST00000541108 PLIN1O60240 522 aa22.81■■□□□ 1.24
CLIP1-215ENST00000541108 SSH1Q8WYL5 1049 aa22.81■■□□□ 1.24
CLIP1-215ENST00000541108 LRP6O75581 1613 aa22.8■■□□□ 1.24
CLIP1-215ENST00000541108 BCL9LQ86UU0 1499 aa22.79■■□□□ 1.24
CLIP1-215ENST00000541108 BTBD11A6QL63 1104 aa22.79■■□□□ 1.24
CLIP1-215ENST00000541108 SLC52A2Q9HAB3 445 aa22.79■■□□□ 1.24
CLIP1-215ENST00000541108 SMC4Q9NTJ3 1288 aa22.79■■□□□ 1.24
CLIP1-215ENST00000541108 SIPA1L3O60292 1781 aaPredicted RBP22.78■■□□□ 1.24
CLIP1-215ENST00000541108 ELL2O00472 640 aaPredicted RBP22.78■■□□□ 1.24
CLIP1-215ENST00000541108 BARGINQ6ZT62 677 aa22.78■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms