RNA–Protein interactions for RNA: ENST00000539952.5

CPSF7-219, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 5

Gene CPSF7, Length 953 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-219ENST00000539952 DDX54Q8TDD1 881 aaKnown RBP8.48□□□□□ -1.05
CPSF7-219ENST00000539952 CD2APQ9Y5K6 639 aa8.48□□□□□ -1.05
CPSF7-219ENST00000539952 KAT6BQ8WYB5 2073 aa8.48□□□□□ -1.05
CPSF7-219ENST00000539952 ARHGEF28Q8N1W1 1705 aaKnown RBP8.48□□□□□ -1.05
CPSF7-219ENST00000539952 ERBB3P21860 1342 aa8.48□□□□□ -1.05
CPSF7-219ENST00000539952 NLGN2Q8NFZ4 835 aa8.47□□□□□ -1.05
CPSF7-219ENST00000539952 ANKRD24Q8TF21 1146 aa8.47□□□□□ -1.05
CPSF7-219ENST00000539952 COL18A1P39060 1754 aa8.47□□□□□ -1.05
CPSF7-219ENST00000539952 LRRC37A3O60309 1634 aa8.47□□□□□ -1.05
CPSF7-219ENST00000539952 KTN1Q86UP2 1357 aaKnown RBP8.47□□□□□ -1.05
CPSF7-219ENST00000539952 TOPAZ1Q8N9V7 1692 aa8.46□□□□□ -1.05
CPSF7-219ENST00000539952 TNS2Q63HR2 1409 aa8.46□□□□□ -1.05
CPSF7-219ENST00000539952 YBX3P16989 372 aaKnown RBP eCLIP8.46□□□□□ -1.062e-7■□□□□ 10.4
CPSF7-219ENST00000539952 PRIM1P49642 420 aaKnown RBP8.46□□□□□ -1.06
CPSF7-219ENST00000539952 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.46□□□□□ -1.06
CPSF7-219ENST00000539952 IP6K1Q92551 441 aa8.46□□□□□ -1.06
CPSF7-219ENST00000539952 SYTL4Q96C24 671 aaPredicted RBP8.46□□□□□ -1.06
CPSF7-219ENST00000539952 USP31Q70CQ4 1352 aa8.46□□□□□ -1.06
CPSF7-219ENST00000539952 AMER1Q5JTC6 1135 aaPredicted RBP8.45□□□□□ -1.06
CPSF7-219ENST00000539952 COL23A1Q86Y22 540 aaPredicted RBP8.45□□□□□ -1.06
CPSF7-219ENST00000539952 CCNL1Q9UK58 526 aaPredicted RBP8.45□□□□□ -1.06
CPSF7-219ENST00000539952 HDGFL2Q7Z4V5 671 aaPredicted RBP8.44□□□□□ -1.06
CPSF7-219ENST00000539952 ZCRB1Q8TBF4 217 aaKnown RBP8.44□□□□□ -1.06
CPSF7-219ENST00000539952 KIAA1210Q9ULL0 1709 aa8.43□□□□□ -1.06
CPSF7-219ENST00000539952 KCNQ4P56696 695 aa8.43□□□□□ -1.06
CPSF7-219ENST00000539952 NME9Q86XW9 330 aa8.43□□□□□ -1.06
CPSF7-219ENST00000539952 L3MBTL2Q969R5 705 aa8.43□□□□□ -1.06
CPSF7-219ENST00000539952 AKAP12Q02952 1782 aa8.43□□□□□ -1.06
CPSF7-219ENST00000539952 UTRNP46939 3433 aa8.42□□□□□ -1.06
CPSF7-219ENST00000539952 APLP1P51693 650 aa8.42□□□□□ -1.06
CPSF7-219ENST00000539952 TMC1Q8TDI8 760 aa8.42□□□□□ -1.06
CPSF7-219ENST00000539952 PUS7Q96PZ0 661 aaKnown RBP8.42□□□□□ -1.06
CPSF7-219ENST00000539952 TERF2IPQ9NYB0 399 aa8.42□□□□□ -1.06
CPSF7-219ENST00000539952 ANKRD36BQ8N2N9 1353 aa8.42□□□□□ -1.06
CPSF7-219ENST00000539952 ATP10DQ9P241 1426 aa8.42□□□□□ -1.06
CPSF7-219ENST00000539952 ABCC6O95255 1503 aa8.42□□□□□ -1.06
CPSF7-219ENST00000539952 TRPM1Q7Z4N2 1603 aa8.42□□□□□ -1.06
CPSF7-219ENST00000539952 USP47Q96K76 1375 aa8.41□□□□□ -1.06
CPSF7-219ENST00000539952 CGNL1Q0VF96 1302 aa8.41□□□□□ -1.06
CPSF7-219ENST00000539952 LTV1Q96GA3 475 aaPredicted RBP8.41□□□□□ -1.06
CPSF7-219ENST00000539952 NHSQ6T4R5 1651 aa8.4□□□□□ -1.06
CPSF7-219ENST00000539952 TOMM70O94826 608 aa8.4□□□□□ -1.06
CPSF7-219ENST00000539952 AMPHP49418 695 aa8.4□□□□□ -1.06
CPSF7-219ENST00000539952 ZNF526Q8TF50 670 aaPredicted RBP8.4□□□□□ -1.06
CPSF7-219ENST00000539952 SLC12A5Q9H2X9 1139 aa8.4□□□□□ -1.06
CPSF7-219ENST00000539952 PAPPAQ13219 1627 aa8.4□□□□□ -1.07
CPSF7-219ENST00000539952 KIF3CO14782 793 aa8.39□□□□□ -1.07
CPSF7-219ENST00000539952 SLC24A1O60721 1099 aa8.39□□□□□ -1.07
CPSF7-219ENST00000539952 MSL1Q68DK7 614 aa8.39□□□□□ -1.07
CPSF7-219ENST00000539952 DNAJC5GQ8N7S2 189 aa8.39□□□□□ -1.07
CPSF7-219ENST00000539952 SMARCC1Q92922 1105 aaPredicted RBP8.39□□□□□ -1.07
CPSF7-219ENST00000539952 COG3Q96JB2 828 aa8.39□□□□□ -1.07
CPSF7-219ENST00000539952 RGPD5Q99666 1765 aa8.39□□□□□ -1.07
CPSF7-219ENST00000539952 PIK3C2AO00443 1686 aa8.39□□□□□ -1.07
CPSF7-219ENST00000539952 NFAT5O94916 1531 aa8.39□□□□□ -1.07
CPSF7-219ENST00000539952 ROCK2O75116 1388 aaKnown RBP8.38□□□□□ -1.07
CPSF7-219ENST00000539952 HOXC9P31274 260 aa8.38□□□□□ -1.07
CPSF7-219ENST00000539952 RAPGEF4Q8WZA2 1011 aa8.38□□□□□ -1.07
CPSF7-219ENST00000539952 RBM42Q9BTD8 480 aaKnown RBP8.38□□□□□ -1.07
CPSF7-219ENST00000539952 BTAF1O14981 1849 aa8.38□□□□□ -1.07
CPSF7-219ENST00000539952 SHANK3Q9BYB0 1731 aa8.37□□□□□ -1.07
CPSF7-219ENST00000539952 SBNO2Q9Y2G9 1366 aa8.37□□□□□ -1.07
CPSF7-219ENST00000539952 TATP17735 454 aaPredicted RBP8.37□□□□□ -1.07
CPSF7-219ENST00000539952 AK7Q96M32 723 aa8.37□□□□□ -1.07
CPSF7-219ENST00000539952 WNK3Q9BYP7 1800 aa8.37□□□□□ -1.07
CPSF7-219ENST00000539952 ADCY9O60503 1353 aa8.36□□□□□ -1.07
CPSF7-219ENST00000539952 IGSF1Q8N6C5 1336 aa8.36□□□□□ -1.07
CPSF7-219ENST00000539952 TGFB2P61812 414 aa8.36□□□□□ -1.07
CPSF7-219ENST00000539952 NBPF6Q5VWK0 638 aa8.36□□□□□ -1.07
CPSF7-219ENST00000539952 MPRIPQ6WCQ1 1025 aa8.36□□□□□ -1.07
CPSF7-219ENST00000539952 NBPF4Q96M43 638 aa8.36□□□□□ -1.07
CPSF7-219ENST00000539952 COL24A1Q17RW2 1714 aa8.36□□□□□ -1.07
CPSF7-219ENST00000539952 QRICH2Q9H0J4 1663 aa8.36□□□□□ -1.07
CPSF7-219ENST00000539952 EDC4Q6P2E9 1401 aaKnown RBP8.36□□□□□ -1.07
CPSF7-219ENST00000539952 NSD2O96028 1365 aa8.35□□□□□ -1.07
CPSF7-219ENST00000539952 MAP3K19Q56UN5 1328 aa8.35□□□□□ -1.07
CPSF7-219ENST00000539952 QSER1Q2KHR3 1735 aa8.35□□□□□ -1.07
CPSF7-219ENST00000539952 CENPBP07199 599 aaPredicted RBP8.35□□□□□ -1.07
CPSF7-219ENST00000539952 SSFA2P28290 1259 aa8.35□□□□□ -1.07
CPSF7-219ENST00000539952 SIN3AQ96ST3 1273 aa8.35□□□□□ -1.07
CPSF7-219ENST00000539952 CARD11Q9BXL7 1154 aa8.35□□□□□ -1.07
CPSF7-219ENST00000539952 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.34□□□□□ -1.07
CPSF7-219ENST00000539952 NEUROD1Q13562 356 aa8.34□□□□□ -1.07
CPSF7-219ENST00000539952 NLGN1Q8N2Q7 840 aa8.34□□□□□ -1.07
CPSF7-219ENST00000539952 RBM46Q8TBY0 533 aaKnown RBP8.34□□□□□ -1.07
CPSF7-219ENST00000539952 PCDH11XQ9BZA7 1347 aa8.33□□□□□ -1.08
CPSF7-219ENST00000539952 PCDH11YQ9BZA8 1340 aa8.33□□□□□ -1.08
CPSF7-219ENST00000539952 FBLN1P23142 703 aa8.33□□□□□ -1.08
CPSF7-219ENST00000539952 FSTL1Q12841 308 aa8.33□□□□□ -1.08
CPSF7-219ENST00000539952 ARHGAP27Q6ZUM4 889 aa8.33□□□□□ -1.08
CPSF7-219ENST00000539952 C16orf71Q8IYS4 520 aaPredicted RBP8.33□□□□□ -1.08
CPSF7-219ENST00000539952 NSD3Q9BZ95 1437 aa8.33□□□□□ -1.08
CPSF7-219ENST00000539952 PALLDQ8WX93 1383 aa8.33□□□□□ -1.08
CPSF7-219ENST00000539952 PHF14O94880 888 aa8.32□□□□□ -1.08
CPSF7-219ENST00000539952 PRELPP51888 382 aa8.32□□□□□ -1.08
CPSF7-219ENST00000539952 NKX1-1Q15270 411 aaPredicted RBP8.32□□□□□ -1.08
CPSF7-219ENST00000539952 TRAPPC3LQ5T215 181 aa8.32□□□□□ -1.08
CPSF7-219ENST00000539952 REM2Q8IYK8 340 aaPredicted RBP8.32□□□□□ -1.08
CPSF7-219ENST00000539952 JMYQ8N9B5 988 aa8.32□□□□□ -1.08
CPSF7-219ENST00000539952 KLRG1Q96E93 195 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms