RNA–Protein interactions for RNA: ENST00000538970.5

VAMP1-206, Transcript of vesicle associated membrane protein 1, humanhuman

TSL 1 (best)

Gene VAMP1, Length 567 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP1-206ENST00000538970 ARXQ96QS3 562 aa17.5■□□□□ 0.39
VAMP1-206ENST00000538970 KIF20BQ96Q89 1820 aa17.49■□□□□ 0.39
VAMP1-206ENST00000538970 RGPD2P0DJD1 1756 aa17.49■□□□□ 0.39
VAMP1-206ENST00000538970 RRS1Q15050 365 aaKnown RBP17.49■□□□□ 0.39
VAMP1-206ENST00000538970 CDCA8Q53HL2 280 aa17.49■□□□□ 0.39
VAMP1-206ENST00000538970 DOT1LQ8TEK3 1739 aa17.49■□□□□ 0.39
VAMP1-206ENST00000538970 GOLGB1Q14789 3259 aaKnown RBP17.48■□□□□ 0.39
VAMP1-206ENST00000538970 GPR162Q16538 588 aa17.48■□□□□ 0.39
VAMP1-206ENST00000538970 SMG6Q86US8 1419 aaKnown RBP17.47■□□□□ 0.39
VAMP1-206ENST00000538970 LRRC4BQ9NT99 713 aa17.47■□□□□ 0.39
VAMP1-206ENST00000538970 TIMELESSQ9UNS1 1208 aa17.47■□□□□ 0.39
VAMP1-206ENST00000538970 MAP3K5Q99683 1374 aa17.47■□□□□ 0.39
VAMP1-206ENST00000538970 NSD2O96028 1365 aa17.46■□□□□ 0.39
VAMP1-206ENST00000538970 ZNF827Q17R98 1081 aa17.46■□□□□ 0.39
VAMP1-206ENST00000538970 NBPF6Q5VWK0 638 aa17.46■□□□□ 0.39
VAMP1-206ENST00000538970 NBPF4Q96M43 638 aa17.46■□□□□ 0.39
VAMP1-206ENST00000538970 INSRP06213 1382 aa17.45■□□□□ 0.38
VAMP1-206ENST00000538970 FLT4P35916 1363 aa17.45■□□□□ 0.38
VAMP1-206ENST00000538970 KIF24Q5T7B8 1368 aa17.45■□□□□ 0.38
VAMP1-206ENST00000538970 ZCRB1Q8TBF4 217 aaKnown RBP17.45■□□□□ 0.38
VAMP1-206ENST00000538970 NSD3Q9BZ95 1437 aa17.45■□□□□ 0.38
VAMP1-206ENST00000538970 SLC27A3Q5K4L6 730 aa17.44■□□□□ 0.38
VAMP1-206ENST00000538970 USHBP1Q8N6Y0 703 aa17.44■□□□□ 0.38
VAMP1-206ENST00000538970 CARD14Q9BXL6 1004 aa17.44■□□□□ 0.38
VAMP1-206ENST00000538970 CLSPNQ9HAW4 1339 aa17.44■□□□□ 0.38
VAMP1-206ENST00000538970 PELP1Q8IZL8 1130 aaKnown RBP17.43■□□□□ 0.38
VAMP1-206ENST00000538970 AKT1S1Q96B36 256 aa17.43■□□□□ 0.38
VAMP1-206ENST00000538970 SYTL4Q96C24 671 aaPredicted RBP17.43■□□□□ 0.38
VAMP1-206ENST00000538970 CGNL1Q0VF96 1302 aa17.43■□□□□ 0.38
VAMP1-206ENST00000538970 QSER1Q2KHR3 1735 aa17.42■□□□□ 0.38
VAMP1-206ENST00000538970 PRIM1P49642 420 aaKnown RBP17.42■□□□□ 0.38
VAMP1-206ENST00000538970 HSP90AB2PQ58FF8 381 aa17.42■□□□□ 0.38
VAMP1-206ENST00000538970 LY75O60449 1722 aa17.41■□□□□ 0.38
VAMP1-206ENST00000538970 KLHL34Q8N239 644 aa17.41■□□□□ 0.38
VAMP1-206ENST00000538970 RAPGEF4Q8WZA2 1011 aa17.41■□□□□ 0.38
VAMP1-206ENST00000538970 ANKRD26Q9UPS8 1709 aa17.4■□□□□ 0.38
VAMP1-206ENST00000538970 TATP17735 454 aaPredicted RBP17.39■□□□□ 0.37
VAMP1-206ENST00000538970 NLGN2Q8NFZ4 835 aa17.39■□□□□ 0.37
VAMP1-206ENST00000538970 KCNQ4P56696 695 aa17.38■□□□□ 0.37
VAMP1-206ENST00000538970 EMILIN1Q9Y6C2 1016 aa17.38■□□□□ 0.37
VAMP1-206ENST00000538970 PNPLA7Q6ZV29 1317 aa17.38■□□□□ 0.37
VAMP1-206ENST00000538970 PCDH11XQ9BZA7 1347 aa17.38■□□□□ 0.37
VAMP1-206ENST00000538970 PCDH11YQ9BZA8 1340 aa17.38■□□□□ 0.37
VAMP1-206ENST00000538970 NCAPD2Q15021 1401 aa17.38■□□□□ 0.37
VAMP1-206ENST00000538970 TUBGCP6Q96RT7 1819 aa17.37■□□□□ 0.37
VAMP1-206ENST00000538970 PCGF6Q9BYE7 350 aa17.37■□□□□ 0.37
VAMP1-206ENST00000538970 KAT6BQ8WYB5 2073 aa17.36■□□□□ 0.37
VAMP1-206ENST00000538970 COL24A1Q17RW2 1714 aa17.36■□□□□ 0.37
VAMP1-206ENST00000538970 PKD1L3Q7Z443 1732 aa17.36■□□□□ 0.37
VAMP1-206ENST00000538970 YBX3P16989 372 aaKnown RBP eCLIP17.35■□□□□ 0.37
VAMP1-206ENST00000538970 SLC16A10Q8TF71 515 aa17.35■□□□□ 0.37
VAMP1-206ENST00000538970 CCNL1Q9UK58 526 aaPredicted RBP17.35■□□□□ 0.37
VAMP1-206ENST00000538970 TFCP2L1Q9NZI6 479 aa17.34■□□□□ 0.37
VAMP1-206ENST00000538970 TOGARAM1Q9Y4F4 1720 aa17.34■□□□□ 0.37
VAMP1-206ENST00000538970 ATP10DQ9P241 1426 aa17.33■□□□□ 0.36
VAMP1-206ENST00000538970 CYP27B1O15528 508 aa17.33■□□□□ 0.36
VAMP1-206ENST00000538970 WASHC2AQ641Q2 1341 aa17.32■□□□□ 0.36
VAMP1-206ENST00000538970 PPM1GO15355 546 aaPredicted RBP17.32■□□□□ 0.36
VAMP1-206ENST00000538970 C5P01031 1676 aa17.31■□□□□ 0.36
VAMP1-206ENST00000538970 PALLDQ8WX93 1383 aa17.3■□□□□ 0.36
VAMP1-206ENST00000538970 POLD1P28340 1107 aa17.3■□□□□ 0.36
VAMP1-206ENST00000538970 HSPA6P17066 643 aa17.29■□□□□ 0.36
VAMP1-206ENST00000538970 POLR3GLQ9BT43 218 aa17.29■□□□□ 0.36
VAMP1-206ENST00000538970 POLKQ9UBT6 870 aa17.29■□□□□ 0.36
VAMP1-206ENST00000538970 EIF4G2P78344 907 aaKnown RBP eCLIP17.28■□□□□ 0.36
VAMP1-206ENST00000538970 MPRIPQ6WCQ1 1025 aa17.28■□□□□ 0.36
VAMP1-206ENST00000538970 EYA1Q99502 592 aa17.28■□□□□ 0.36
VAMP1-206ENST00000538970 MAP2P11137 1827 aaKnown RBP17.27■□□□□ 0.36
VAMP1-206ENST00000538970 HSPA5P11021 654 aaKnown RBP17.27■□□□□ 0.36
VAMP1-206ENST00000538970 NKX1-1Q15270 411 aaPredicted RBP17.27■□□□□ 0.36
VAMP1-206ENST00000538970 COL23A1Q86Y22 540 aaPredicted RBP17.27■□□□□ 0.36
VAMP1-206ENST00000538970 ITGB4P16144 1822 aa17.26■□□□□ 0.35
VAMP1-206ENST00000538970 ZNF526Q8TF50 670 aaPredicted RBP17.26■□□□□ 0.35
VAMP1-206ENST00000538970 SPG7Q9UQ90 795 aa17.26■□□□□ 0.35
VAMP1-206ENST00000538970 TAF1LQ8IZX4 1826 aa17.26■□□□□ 0.35
VAMP1-206ENST00000538970 GPBP1L1Q9HC44 474 aaPredicted RBP17.25■□□□□ 0.35
VAMP1-206ENST00000538970 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.25■□□□□ 0.35
VAMP1-206ENST00000538970 PLEKHG2Q9H7P9 1386 aa17.25■□□□□ 0.35
VAMP1-206ENST00000538970 C4BP0C0L5 1744 aa17.24■□□□□ 0.35
VAMP1-206ENST00000538970 MSH5O43196 834 aa17.24■□□□□ 0.35
VAMP1-206ENST00000538970 GRIN3BO60391 1043 aa17.24■□□□□ 0.35
VAMP1-206ENST00000538970 TNNT2P45379 298 aaPredicted RBP17.24■□□□□ 0.35
VAMP1-206ENST00000538970 EIF4A2Q14240 407 aaKnown RBP17.24■□□□□ 0.35
VAMP1-206ENST00000538970 PIGBQ92521 554 aa17.24■□□□□ 0.35
VAMP1-206ENST00000538970 SMARCC1Q92922 1105 aaPredicted RBP17.24■□□□□ 0.35
VAMP1-206ENST00000538970 HMGB2P26583 209 aaKnown RBP17.23■□□□□ 0.35
VAMP1-206ENST00000538970 ADCY9O60503 1353 aa17.23■□□□□ 0.35
VAMP1-206ENST00000538970 CCER1Q8TC90 406 aaPredicted RBP17.22■□□□□ 0.35
VAMP1-206ENST00000538970 PANK3Q9H999 370 aa17.22■□□□□ 0.35
VAMP1-206ENST00000538970 IGSF1Q8N6C5 1336 aa17.21■□□□□ 0.35
VAMP1-206ENST00000538970 PHKG2P15735 406 aa17.21■□□□□ 0.35
VAMP1-206ENST00000538970 MSL1Q68DK7 614 aa17.21■□□□□ 0.35
VAMP1-206ENST00000538970 IFNL2Q8IZJ0 200 aa17.21■□□□□ 0.35
VAMP1-206ENST00000538970 FLAD1Q8NFF5 587 aa17.21■□□□□ 0.35
VAMP1-206ENST00000538970 TMOD3Q9NYL9 352 aa17.2■□□□□ 0.34
VAMP1-206ENST00000538970 AMIGO3Q86WK7 504 aa17.19■□□□□ 0.34
VAMP1-206ENST00000538970 AK7Q96M32 723 aa17.19■□□□□ 0.34
VAMP1-206ENST00000538970 UBR3Q6ZT12 1888 aa17.18■□□□□ 0.34
VAMP1-206ENST00000538970 LOC102724428A0A0B4J2F2 783 aa17.18■□□□□ 0.34
VAMP1-206ENST00000538970 SIK1P57059 783 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms