RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 WNK3Q9BYP7 1800 aa15.98■□□□□ 0.15
CLIP1-208ENST00000537004 AMER1Q5JTC6 1135 aaPredicted RBP15.97■□□□□ 0.15
CLIP1-208ENST00000537004 TNS1Q9HBL0 1735 aaKnown RBP15.97■□□□□ 0.15
CLIP1-208ENST00000537004 MORC1Q86VD1 984 aa15.97■□□□□ 0.15
CLIP1-208ENST00000537004 PSDA5PKW4 1024 aaPredicted RBP15.96■□□□□ 0.15
CLIP1-208ENST00000537004 PNISRQ8TF01 805 aaKnown RBP15.96■□□□□ 0.15
CLIP1-208ENST00000537004 MEGF6O75095 1541 aa15.96■□□□□ 0.15
CLIP1-208ENST00000537004 SMG6Q86US8 1419 aaKnown RBP15.96■□□□□ 0.15
CLIP1-208ENST00000537004 RGPD1P0DJD0 1748 aa15.96■□□□□ 0.15
CLIP1-208ENST00000537004 KIF24Q5T7B8 1368 aa15.96■□□□□ 0.14
CLIP1-208ENST00000537004 RGPD2P0DJD1 1756 aa15.96■□□□□ 0.14
CLIP1-208ENST00000537004 CC2D1BQ5T0F9 858 aaKnown RBP15.95■□□□□ 0.14
CLIP1-208ENST00000537004 BCL11BQ9C0K0 894 aaPredicted RBP15.95■□□□□ 0.14
CLIP1-208ENST00000537004 ZBED9Q6R2W3 1325 aa15.95■□□□□ 0.14
CLIP1-208ENST00000537004 FAM208AQ9UK61 1670 aaKnown RBP15.94■□□□□ 0.14
CLIP1-208ENST00000537004 ZCRB1Q8TBF4 217 aaKnown RBP15.94■□□□□ 0.14
CLIP1-208ENST00000537004 EYA1Q99502 592 aa15.94■□□□□ 0.14
CLIP1-208ENST00000537004 SUPT16HQ9Y5B9 1047 aaKnown RBP15.94■□□□□ 0.14
CLIP1-208ENST00000537004 NSD2O96028 1365 aa15.93■□□□□ 0.14
CLIP1-208ENST00000537004 BCL9O00512 1426 aa15.93■□□□□ 0.14
CLIP1-208ENST00000537004 EIF4A2Q14240 407 aaKnown RBP15.93■□□□□ 0.14
CLIP1-208ENST00000537004 RAPGEF4Q8WZA2 1011 aa15.93■□□□□ 0.14
CLIP1-208ENST00000537004 R3HDM1Q15032 1099 aaKnown RBP15.92■□□□□ 0.14
CLIP1-208ENST00000537004 MAP2P11137 1827 aaKnown RBP15.91■□□□□ 0.14
CLIP1-208ENST00000537004 PROM2Q8N271 834 aa15.91■□□□□ 0.14
CLIP1-208ENST00000537004 TATP17735 454 aaPredicted RBP15.9■□□□□ 0.14
CLIP1-208ENST00000537004 SBF2Q86WG5 1849 aa15.89■□□□□ 0.13
CLIP1-208ENST00000537004 PLSCR1O15162 318 aa15.89■□□□□ 0.13
CLIP1-208ENST00000537004 ANKRD26Q9UPS8 1709 aa15.89■□□□□ 0.13
CLIP1-208ENST00000537004 SYTL4Q96C24 671 aaPredicted RBP15.89■□□□□ 0.13
CLIP1-208ENST00000537004 NPC1L1Q9UHC9 1359 aa15.88■□□□□ 0.13
CLIP1-208ENST00000537004 PRIM1P49642 420 aaKnown RBP15.88■□□□□ 0.13
CLIP1-208ENST00000537004 CYP27B1O15528 508 aa15.87■□□□□ 0.13
CLIP1-208ENST00000537004 MTHFSP49914 203 aa15.87■□□□□ 0.13
CLIP1-208ENST00000537004 KAT6BQ8WYB5 2073 aa15.87■□□□□ 0.13
CLIP1-208ENST00000537004 NCAPD2Q15021 1401 aa15.86■□□□□ 0.13
CLIP1-208ENST00000537004 NEFLP07196 543 aa15.85■□□□□ 0.13
CLIP1-208ENST00000537004 TXNRD1Q16881 649 aa15.85■□□□□ 0.13
CLIP1-208ENST00000537004 ANO8Q9HCE9 1232 aaPredicted RBP15.85■□□□□ 0.13
CLIP1-208ENST00000537004 FKBP8Q14318 412 aa15.85■□□□□ 0.13
CLIP1-208ENST00000537004 AEBP1Q8IUX7 1158 aa15.85■□□□□ 0.13
CLIP1-208ENST00000537004 IGSF1Q8N6C5 1336 aa15.84■□□□□ 0.13
CLIP1-208ENST00000537004 PCDH11XQ9BZA7 1347 aa15.84■□□□□ 0.13
CLIP1-208ENST00000537004 PCDH11YQ9BZA8 1340 aa15.84■□□□□ 0.13
CLIP1-208ENST00000537004 SHANK3Q9BYB0 1731 aa15.83■□□□□ 0.13
CLIP1-208ENST00000537004 KCNQ4P56696 695 aa15.83■□□□□ 0.12
CLIP1-208ENST00000537004 PPP2R1AP30153 589 aa15.82■□□□□ 0.12
CLIP1-208ENST00000537004 IL13P35225 146 aa15.82■□□□□ 0.12
CLIP1-208ENST00000537004 NBPF14Q5TI25 921 aa15.82■□□□□ 0.12
CLIP1-208ENST00000537004 NHSQ6T4R5 1651 aa15.82■□□□□ 0.12
CLIP1-208ENST00000537004 RREB1Q92766 1687 aa15.82■□□□□ 0.12
CLIP1-208ENST00000537004 SULT6B1Q6IMI4 303 aa15.81■□□□□ 0.12
CLIP1-208ENST00000537004 PDGFDQ9GZP0 370 aaPredicted RBP15.81■□□□□ 0.12
CLIP1-208ENST00000537004 LRRC4BQ9NT99 713 aa15.81■□□□□ 0.12
CLIP1-208ENST00000537004 NUP188Q5SRE5 1749 aa15.81■□□□□ 0.12
CLIP1-208ENST00000537004 SPG7Q9UQ90 795 aa15.8■□□□□ 0.12
CLIP1-208ENST00000537004 MPRIPQ6WCQ1 1025 aa15.79■□□□□ 0.12
CLIP1-208ENST00000537004 BTAF1O14981 1849 aa15.78■□□□□ 0.12
CLIP1-208ENST00000537004 SENP3-EIF4A1A0A087X0R7 540 aa15.78■□□□□ 0.12
CLIP1-208ENST00000537004 HMOX1P09601 288 aa15.78■□□□□ 0.12
CLIP1-208ENST00000537004 PHKG2P15735 406 aa15.78■□□□□ 0.12
CLIP1-208ENST00000537004 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.78■□□□□ 0.122e-7■□□□□ 9.4
CLIP1-208ENST00000537004 DOT1LQ8TEK3 1739 aa15.78■□□□□ 0.12
CLIP1-208ENST00000537004 UTRNP46939 3433 aa15.77■□□□□ 0.12
CLIP1-208ENST00000537004 NKX1-1Q15270 411 aaPredicted RBP15.77■□□□□ 0.11
CLIP1-208ENST00000537004 GOLGB1Q14789 3259 aaKnown RBP15.76■□□□□ 0.11
CLIP1-208ENST00000537004 IFNL2Q8IZJ0 200 aa15.76■□□□□ 0.11
CLIP1-208ENST00000537004 PIGBQ92521 554 aa15.76■□□□□ 0.11
CLIP1-208ENST00000537004 DIAPH1O60610 1272 aaKnown RBP15.75■□□□□ 0.11
CLIP1-208ENST00000537004 SLC15A2Q16348 729 aa15.75■□□□□ 0.11
CLIP1-208ENST00000537004 ZNF827Q17R98 1081 aa15.75■□□□□ 0.11
CLIP1-208ENST00000537004 RGPD3A6NKT7 1758 aaPredicted RBP15.75■□□□□ 0.11
CLIP1-208ENST00000537004 RGPD4Q7Z3J3 1758 aa15.75■□□□□ 0.11
CLIP1-208ENST00000537004 PKD1L3Q7Z443 1732 aa15.75■□□□□ 0.11
CLIP1-208ENST00000537004 ZNF530Q6P9A1 599 aaPredicted RBP15.75■□□□□ 0.11
CLIP1-208ENST00000537004 PLEKHO1Q53GL0 409 aaPredicted RBP15.74■□□□□ 0.11
CLIP1-208ENST00000537004 STK32BQ9NY57 414 aa15.74■□□□□ 0.11
CLIP1-208ENST00000537004 NUDCQ9Y266 331 aa15.74■□□□□ 0.11
CLIP1-208ENST00000537004 KDRP35968 1356 aa15.74■□□□□ 0.11
CLIP1-208ENST00000537004 U2SURPO15042 1029 aaKnown RBP15.73■□□□□ 0.11
CLIP1-208ENST00000537004 CCNL1Q9UK58 526 aaPredicted RBP15.73■□□□□ 0.11
CLIP1-208ENST00000537004 SLC27A3Q5K4L6 730 aa15.72■□□□□ 0.11
CLIP1-208ENST00000537004 ADAMTS8Q9UP79 889 aa15.72■□□□□ 0.11
CLIP1-208ENST00000537004 TOGARAM1Q9Y4F4 1720 aa15.72■□□□□ 0.11
CLIP1-208ENST00000537004 ZBTB7AO95365 584 aa15.72■□□□□ 0.11
CLIP1-208ENST00000537004 WDR43Q15061 677 aaKnown RBP eCLIP15.72■□□□□ 0.11
CLIP1-208ENST00000537004 AMOTQ4VCS5 1084 aa15.72■□□□□ 0.11
CLIP1-208ENST00000537004 ASAP1Q9ULH1 1129 aa15.72■□□□□ 0.11
CLIP1-208ENST00000537004 COL3A1P02461 1466 aaPredicted RBP15.71■□□□□ 0.11
CLIP1-208ENST00000537004 PALLDQ8WX93 1383 aa15.71■□□□□ 0.11
CLIP1-208ENST00000537004 TMOD3Q9NYL9 352 aa15.71■□□□□ 0.11
CLIP1-208ENST00000537004 AKT1S1Q96B36 256 aa15.7■□□□□ 0.1
CLIP1-208ENST00000537004 IRX6P78412 446 aaPredicted RBP15.69■□□□□ 0.1
CLIP1-208ENST00000537004 C1orf141Q5JVX7 400 aa15.69■□□□□ 0.1
CLIP1-208ENST00000537004 DCAF5Q96JK2 942 aa15.69■□□□□ 0.1
CLIP1-208ENST00000537004 SALL2Q9Y467 1007 aaPredicted RBP15.69■□□□□ 0.1
CLIP1-208ENST00000537004 KDM6AO15550 1401 aaPredicted RBP15.69■□□□□ 0.1
CLIP1-208ENST00000537004 ATF5Q9Y2D1 282 aaPredicted RBP15.68■□□□□ 0.1
CLIP1-208ENST00000537004 PAPPAQ13219 1627 aa15.68■□□□□ 0.1
CLIP1-208ENST00000537004 MTHFSDQ2M296 383 aaKnown RBP15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms