RNA–Protein interactions for RNA: ENST00000536871.6

SMG6-203, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 2 BASIC

Gene SMG6, Length 1,865 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-203ENST00000536871 IP6K1Q92551 441 aa17.16■□□□□ 0.34
SMG6-203ENST00000536871 NPM2Q86SE8 214 aaKnown RBP17.15■□□□□ 0.34
SMG6-203ENST00000536871 MARF1Q9Y4F3 1742 aaKnown RBP17.14■□□□□ 0.34
SMG6-203ENST00000536871 MTHFSDQ2M296 383 aaKnown RBP17.14■□□□□ 0.33
SMG6-203ENST00000536871 CHMP4AQ9BY43 222 aa17.14■□□□□ 0.33
SMG6-203ENST00000536871 PHRF1Q9P1Y6 1649 aaKnown RBP17.14■□□□□ 0.33
SMG6-203ENST00000536871 SKAP1Q86WV1 359 aa17.14■□□□□ 0.33
SMG6-203ENST00000536871 ZBTB7BO15156 539 aaPredicted RBP17.13■□□□□ 0.33
SMG6-203ENST00000536871 DCTN1Q14203 1278 aa17.13■□□□□ 0.33
SMG6-203ENST00000536871 GCC1Q96CN9 775 aa17.13■□□□□ 0.33
SMG6-203ENST00000536871 KIF1AQ12756 1690 aa17.12■□□□□ 0.33
SMG6-203ENST00000536871 GNAT3A8MTJ3 354 aa17.12■□□□□ 0.33
SMG6-203ENST00000536871 UPF2Q9HAU5 1272 aaKnown RBP17.12■□□□□ 0.33
SMG6-203ENST00000536871 MST1RQ04912 1400 aa17.12■□□□□ 0.33
SMG6-203ENST00000536871 NFAT5O94916 1531 aa17.12■□□□□ 0.33
SMG6-203ENST00000536871 MCM10Q7L590 875 aa17.12■□□□□ 0.33
SMG6-203ENST00000536871 C19orf44Q9H6X5 657 aa17.12■□□□□ 0.33
SMG6-203ENST00000536871 DCCP43146 1447 aa17.11■□□□□ 0.33
SMG6-203ENST00000536871 INTS3Q68E01 1043 aaKnown RBP17.11■□□□□ 0.33
SMG6-203ENST00000536871 PROSER2Q86WR7 435 aaPredicted RBP17.11■□□□□ 0.33
SMG6-203ENST00000536871 TSPYL4Q9UJ04 414 aa17.1■□□□□ 0.33
SMG6-203ENST00000536871 MAP3K5Q99683 1374 aa17.1■□□□□ 0.33
SMG6-203ENST00000536871 ELL2O00472 640 aaPredicted RBP17.1■□□□□ 0.33
SMG6-203ENST00000536871 DAXXQ9UER7 740 aaPredicted RBP17.1■□□□□ 0.33
SMG6-203ENST00000536871 VIRMAQ69YN4 1812 aaKnown RBP17.09■□□□□ 0.33
SMG6-203ENST00000536871 SLIT3O75094 1523 aa17.09■□□□□ 0.33
SMG6-203ENST00000536871 LRRC37A3O60309 1634 aa17.08■□□□□ 0.33
SMG6-203ENST00000536871 EIF5BO60841 1220 aaKnown RBP17.08■□□□□ 0.33
SMG6-203ENST00000536871 NUCB1Q02818 461 aa17.08■□□□□ 0.33
SMG6-203ENST00000536871 NUTM2GQ5VZR2 741 aa17.07■□□□□ 0.32
SMG6-203ENST00000536871 USP19O94966 1318 aa17.06■□□□□ 0.32
SMG6-203ENST00000536871 C1orf167Q5SNV9 1468 aa17.06■□□□□ 0.32
SMG6-203ENST00000536871 AMOTQ4VCS5 1084 aa17.05■□□□□ 0.32
SMG6-203ENST00000536871 STK31Q9BXU1 1019 aa17.05■□□□□ 0.32
SMG6-203ENST00000536871 TAF7Q15545 349 aaPredicted RBP17.05■□□□□ 0.32
SMG6-203ENST00000536871 LTN1O94822 1766 aa17.04■□□□□ 0.32
SMG6-203ENST00000536871 CCDC30Q5VVM6 783 aa17.04■□□□□ 0.32
SMG6-203ENST00000536871 ARHGEF25Q86VW2 580 aa17.04■□□□□ 0.32
SMG6-203ENST00000536871 RPAP2Q8IXW5 612 aaPredicted RBP17.04■□□□□ 0.32
SMG6-203ENST00000536871 PLEKHG2Q9H7P9 1386 aa17.04■□□□□ 0.32
SMG6-203ENST00000536871 NCAPD2Q15021 1401 aa17.04■□□□□ 0.32
SMG6-203ENST00000536871 FOXO3O43524 673 aa17.03■□□□□ 0.32
SMG6-203ENST00000536871 GCP02774 474 aa17.03■□□□□ 0.32
SMG6-203ENST00000536871 ATF3P18847 181 aa17.03■□□□□ 0.32
SMG6-203ENST00000536871 CCT4P50991 539 aaKnown RBP17.03■□□□□ 0.32
SMG6-203ENST00000536871 CHD1LQ86WJ1 897 aa17.03■□□□□ 0.32
SMG6-203ENST00000536871 KRT28Q7Z3Y7 464 aa17.03■□□□□ 0.32
SMG6-203ENST00000536871 OVOS2A0A0G2JMS6 1433 aa17.02■□□□□ 0.32
SMG6-203ENST00000536871 HOXB7P09629 217 aa17.02■□□□□ 0.32
SMG6-203ENST00000536871 PLEKHO1Q53GL0 409 aaPredicted RBP17.02■□□□□ 0.32
SMG6-203ENST00000536871 ORAI2Q96SN7 254 aa17.02■□□□□ 0.32
SMG6-203ENST00000536871 MSH6P52701 1360 aa17.02■□□□□ 0.31
SMG6-203ENST00000536871 LMTK3Q96Q04 1460 aa17.02■□□□□ 0.31
SMG6-203ENST00000536871 SLC4A2P04920 1241 aa17.01■□□□□ 0.31
SMG6-203ENST00000536871 CEMIPQ8WUJ3 1361 aa17.01■□□□□ 0.31
SMG6-203ENST00000536871 RGS12O14924 1447 aa17.01■□□□□ 0.31
SMG6-203ENST00000536871 BECN1Q14457 450 aa17.01■□□□□ 0.31
SMG6-203ENST00000536871 CADPS2Q86UW7 1296 aa17.01■□□□□ 0.31
SMG6-203ENST00000536871 LTV1Q96GA3 475 aaPredicted RBP17.01■□□□□ 0.31
SMG6-203ENST00000536871 TRPM3Q9HCF6 1732 aaPredicted RBP17■□□□□ 0.31
SMG6-203ENST00000536871 DEKP35659 375 aaKnown RBP17■□□□□ 0.31
SMG6-203ENST00000536871 RBM33Q96EV2 1170 aaKnown RBP17■□□□□ 0.31
SMG6-203ENST00000536871 AKAP4Q5JQC9 854 aa16.99■□□□□ 0.31
SMG6-203ENST00000536871 HMMRO75330 724 aa16.99■□□□□ 0.31
SMG6-203ENST00000536871 IL17REQ8NFR9 667 aa16.99■□□□□ 0.31
SMG6-203ENST00000536871 USP35Q9P2H5 1018 aa16.99■□□□□ 0.31
SMG6-203ENST00000536871 BMP2KLQ5H9B9 411 aa16.98■□□□□ 0.31
SMG6-203ENST00000536871 NBPF6Q5VWK0 638 aa16.98■□□□□ 0.31
SMG6-203ENST00000536871 ANKRD44Q8N8A2 993 aa16.98■□□□□ 0.31
SMG6-203ENST00000536871 NBPF4Q96M43 638 aa16.98■□□□□ 0.31
SMG6-203ENST00000536871 ABCC6O95255 1503 aa16.98■□□□□ 0.31
SMG6-203ENST00000536871 TMEM94Q12767 1356 aa16.97■□□□□ 0.31
SMG6-203ENST00000536871 NPHP3Q7Z494 1330 aa16.97■□□□□ 0.31
SMG6-203ENST00000536871 KRT24Q2M2I5 525 aa16.97■□□□□ 0.31
SMG6-203ENST00000536871 DCTPP1Q9H773 170 aa16.97■□□□□ 0.31
SMG6-203ENST00000536871 MED1Q15648 1581 aaPredicted RBP16.97■□□□□ 0.31
SMG6-203ENST00000536871 TBC1D32Q96NH3 1257 aa16.97■□□□□ 0.31
SMG6-203ENST00000536871 PXDNLA1KZ92 1463 aa16.96■□□□□ 0.31
SMG6-203ENST00000536871 ANKRD45Q5TZF3 282 aa16.96■□□□□ 0.31
SMG6-203ENST00000536871 CAMTA1Q9Y6Y1 1673 aa16.96■□□□□ 0.31
SMG6-203ENST00000536871 MIS18AQ9NYP9 233 aa16.95■□□□□ 0.3
SMG6-203ENST00000536871 GNAI3P08754 354 aa16.95■□□□□ 0.3
SMG6-203ENST00000536871 C1orf141Q5JVX7 400 aa16.95■□□□□ 0.3
SMG6-203ENST00000536871 ANKRD24Q8TF21 1146 aa16.95■□□□□ 0.3
SMG6-203ENST00000536871 LNPKQ9C0E8 428 aa16.95■□□□□ 0.3
SMG6-203ENST00000536871 LMO7Q8WWI1 1683 aa16.94■□□□□ 0.3
SMG6-203ENST00000536871 RTL5Q5HYW3 569 aaPredicted RBP16.94■□□□□ 0.3
SMG6-203ENST00000536871 SIRT2Q8IXJ6 389 aa16.94■□□□□ 0.3
SMG6-203ENST00000536871 ALS2Q96Q42 1657 aa16.94■□□□□ 0.3
SMG6-203ENST00000536871 TEFQ10587 303 aa16.93■□□□□ 0.3
SMG6-203ENST00000536871 FLIIQ13045 1269 aa16.93■□□□□ 0.3
SMG6-203ENST00000536871 LMOD2Q6P5Q4 547 aa16.93■□□□□ 0.3
SMG6-203ENST00000536871 CACNA1FO60840 1977 aa16.93■□□□□ 0.3
SMG6-203ENST00000536871 ATP10DQ9P241 1426 aa16.93■□□□□ 0.3
SMG6-203ENST00000536871 CEP85Q6P2H3 762 aa16.93■□□□□ 0.3
SMG6-203ENST00000536871 ZNF530Q6P9A1 599 aaPredicted RBP16.93■□□□□ 0.3
SMG6-203ENST00000536871 C1orf115Q9H7X2 142 aa16.93■□□□□ 0.3
SMG6-203ENST00000536871 USHBP1Q8N6Y0 703 aa16.92■□□□□ 0.3
SMG6-203ENST00000536871 FAM208AQ9UK61 1670 aaKnown RBP16.91■□□□□ 0.3
SMG6-203ENST00000536871 ZBTB7CA1YPR0 619 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms