RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 DCAF8L1A6NGE4 600 aa18.17■□□□□ 0.5
RTN3-207ENST00000536011 MEGF6O75095 1541 aa18.17■□□□□ 0.5
RTN3-207ENST00000536011 SLC27A3Q5K4L6 730 aa18.16■□□□□ 0.5
RTN3-207ENST00000536011 CCER1Q8TC90 406 aaPredicted RBP18.16■□□□□ 0.5
RTN3-207ENST00000536011 RGPD2P0DJD1 1756 aa18.16■□□□□ 0.5
RTN3-207ENST00000536011 NBPF6Q5VWK0 638 aa18.15■□□□□ 0.5
RTN3-207ENST00000536011 SYTL4Q96C24 671 aaPredicted RBP18.15■□□□□ 0.5
RTN3-207ENST00000536011 NBPF4Q96M43 638 aa18.15■□□□□ 0.5
RTN3-207ENST00000536011 CARD14Q9BXL6 1004 aa18.15■□□□□ 0.5
RTN3-207ENST00000536011 PAPPAQ13219 1627 aa18.15■□□□□ 0.5
RTN3-207ENST00000536011 ZBTB7AO95365 584 aa18.14■□□□□ 0.49
RTN3-207ENST00000536011 TATP17735 454 aaPredicted RBP18.14■□□□□ 0.49
RTN3-207ENST00000536011 EIF4G2P78344 907 aaKnown RBP eCLIP18.14■□□□□ 0.49
RTN3-207ENST00000536011 DOT1LQ8TEK3 1739 aa18.14■□□□□ 0.49
RTN3-207ENST00000536011 SHANK3Q9BYB0 1731 aa18.13■□□□□ 0.49
RTN3-207ENST00000536011 HSP90AB2PQ58FF8 381 aa18.13■□□□□ 0.49
RTN3-207ENST00000536011 MTFR1LQ9H019 292 aa18.13■□□□□ 0.49
RTN3-207ENST00000536011 PRIM1P49642 420 aaKnown RBP18.12■□□□□ 0.49
RTN3-207ENST00000536011 USHBP1Q8N6Y0 703 aa18.12■□□□□ 0.49
RTN3-207ENST00000536011 POLR3GLQ9BT43 218 aa18.12■□□□□ 0.49
RTN3-207ENST00000536011 PCDH11XQ9BZA7 1347 aa18.12■□□□□ 0.49
RTN3-207ENST00000536011 PCDH11YQ9BZA8 1340 aa18.12■□□□□ 0.49
RTN3-207ENST00000536011 ANKRD26Q9UPS8 1709 aa18.11■□□□□ 0.49
RTN3-207ENST00000536011 HMGB2P26583 209 aaKnown RBP18.1■□□□□ 0.49
RTN3-207ENST00000536011 PDGFDQ9GZP0 370 aaPredicted RBP18.1■□□□□ 0.49
RTN3-207ENST00000536011 PPM1GO15355 546 aaPredicted RBP18.09■□□□□ 0.49
RTN3-207ENST00000536011 KCNA4P22459 653 aa18.09■□□□□ 0.49
RTN3-207ENST00000536011 ATF5Q9Y2D1 282 aaPredicted RBP18.09■□□□□ 0.49
RTN3-207ENST00000536011 EMILIN1Q9Y6C2 1016 aa18.09■□□□□ 0.49
RTN3-207ENST00000536011 PTGER2P43116 358 aa18.08■□□□□ 0.48
RTN3-207ENST00000536011 LRRC4BQ9NT99 713 aa18.08■□□□□ 0.48
RTN3-207ENST00000536011 NSD2O96028 1365 aa18.07■□□□□ 0.48
RTN3-207ENST00000536011 WASHC2AQ641Q2 1341 aa18.07■□□□□ 0.48
RTN3-207ENST00000536011 ZNF827Q17R98 1081 aa18.07■□□□□ 0.48
RTN3-207ENST00000536011 LY75O60449 1722 aa18.06■□□□□ 0.48
RTN3-207ENST00000536011 QSER1Q2KHR3 1735 aa18.06■□□□□ 0.48
RTN3-207ENST00000536011 HSPA5P11021 654 aaKnown RBP18.06■□□□□ 0.48
RTN3-207ENST00000536011 SLC16A10Q8TF71 515 aa18.06■□□□□ 0.48
RTN3-207ENST00000536011 NCAPD2Q15021 1401 aa18.06■□□□□ 0.48
RTN3-207ENST00000536011 AKT1S1Q96B36 256 aa18.05■□□□□ 0.48
RTN3-207ENST00000536011 TFCP2L1Q9NZI6 479 aa18.05■□□□□ 0.48
RTN3-207ENST00000536011 CCNL1Q9UK58 526 aaPredicted RBP18.05■□□□□ 0.48
RTN3-207ENST00000536011 PKD1L3Q7Z443 1732 aa18.04■□□□□ 0.48
RTN3-207ENST00000536011 SPG7Q9UQ90 795 aa18.04■□□□□ 0.48
RTN3-207ENST00000536011 MAP2P11137 1827 aaKnown RBP18.03■□□□□ 0.48
RTN3-207ENST00000536011 PLEKHG2Q9H7P9 1386 aa18.03■□□□□ 0.48
RTN3-207ENST00000536011 ARXQ96QS3 562 aa18.02■□□□□ 0.48
RTN3-207ENST00000536011 SGIP1Q9BQI5 828 aa18.02■□□□□ 0.48
RTN3-207ENST00000536011 POLKQ9UBT6 870 aa18.02■□□□□ 0.48
RTN3-207ENST00000536011 POLD1P28340 1107 aa18.01■□□□□ 0.47
RTN3-207ENST00000536011 FHDC1Q9C0D6 1143 aaPredicted RBP18.01■□□□□ 0.47
RTN3-207ENST00000536011 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.01■□□□□ 0.47
RTN3-207ENST00000536011 MAP3K5Q99683 1374 aa18.01■□□□□ 0.47
RTN3-207ENST00000536011 PNPLA7Q6ZV29 1317 aa18■□□□□ 0.47
RTN3-207ENST00000536011 CYP27B1O15528 508 aa18■□□□□ 0.47
RTN3-207ENST00000536011 YY1P25490 414 aa18■□□□□ 0.47
RTN3-207ENST00000536011 TNNT2P45379 298 aaPredicted RBP18■□□□□ 0.47
RTN3-207ENST00000536011 SMARCC1Q92922 1105 aaPredicted RBP18■□□□□ 0.47
RTN3-207ENST00000536011 PANK3Q9H999 370 aa18■□□□□ 0.47
RTN3-207ENST00000536011 MPRIPQ6WCQ1 1025 aa17.99■□□□□ 0.47
RTN3-207ENST00000536011 EYA1Q99502 592 aa17.99■□□□□ 0.47
RTN3-207ENST00000536011 SYT17Q9BSW7 474 aa17.99■□□□□ 0.47
RTN3-207ENST00000536011 PALLDQ8WX93 1383 aa17.99■□□□□ 0.47
RTN3-207ENST00000536011 UTRNP46939 3433 aa17.98■□□□□ 0.47
RTN3-207ENST00000536011 HOXD11P31277 338 aaPredicted RBP17.98■□□□□ 0.47
RTN3-207ENST00000536011 KCNQ4P56696 695 aa17.98■□□□□ 0.47
RTN3-207ENST00000536011 TUBGCP6Q96RT7 1819 aa17.98■□□□□ 0.47
RTN3-207ENST00000536011 C5P01031 1676 aa17.97■□□□□ 0.47
RTN3-207ENST00000536011 NKX1-1Q15270 411 aaPredicted RBP17.97■□□□□ 0.47
RTN3-207ENST00000536011 TOGARAM1Q9Y4F4 1720 aa17.96■□□□□ 0.47
RTN3-207ENST00000536011 EIF4A2Q14240 407 aaKnown RBP17.96■□□□□ 0.47
RTN3-207ENST00000536011 FLAD1Q8NFF5 587 aa17.96■□□□□ 0.47
RTN3-207ENST00000536011 KNSTRNQ9Y448 316 aa17.96■□□□□ 0.47
RTN3-207ENST00000536011 MORC1Q86VD1 984 aa17.95■□□□□ 0.46
RTN3-207ENST00000536011 IFNL2Q8IZJ0 200 aa17.95■□□□□ 0.46
RTN3-207ENST00000536011 CNKSR2Q8WXI2 1034 aa17.95■□□□□ 0.46
RTN3-207ENST00000536011 ITGB4P16144 1822 aa17.95■□□□□ 0.46
RTN3-207ENST00000536011 COL24A1Q17RW2 1714 aa17.95■□□□□ 0.46
RTN3-207ENST00000536011 TMOD3Q9NYL9 352 aa17.94■□□□□ 0.46
RTN3-207ENST00000536011 IGSF1Q8N6C5 1336 aa17.94■□□□□ 0.46
RTN3-207ENST00000536011 PHKG2P15735 406 aa17.92■□□□□ 0.46
RTN3-207ENST00000536011 PIGBQ92521 554 aa17.92■□□□□ 0.46
RTN3-207ENST00000536011 AK7Q96M32 723 aa17.92■□□□□ 0.46
RTN3-207ENST00000536011 TAF1LQ8IZX4 1826 aa17.91■□□□□ 0.46
RTN3-207ENST00000536011 HSP90AB1P08238 724 aaKnown RBP17.91■□□□□ 0.46
RTN3-207ENST00000536011 KLHL34Q8N239 644 aa17.91■□□□□ 0.46
RTN3-207ENST00000536011 C4BP0C0L5 1744 aa17.9■□□□□ 0.46
RTN3-207ENST00000536011 AMOTQ4VCS5 1084 aa17.89■□□□□ 0.45
RTN3-207ENST00000536011 PLEKHO1Q53GL0 409 aaPredicted RBP17.89■□□□□ 0.45
RTN3-207ENST00000536011 COL23A1Q86Y22 540 aaPredicted RBP17.89■□□□□ 0.45
RTN3-207ENST00000536011 GOLGB1Q14789 3259 aaKnown RBP17.89■□□□□ 0.45
RTN3-207ENST00000536011 LOC102724428A0A0B4J2F2 783 aa17.88■□□□□ 0.45
RTN3-207ENST00000536011 SIK1P57059 783 aa17.88■□□□□ 0.45
RTN3-207ENST00000536011 KIF7Q2M1P5 1343 aa17.88■□□□□ 0.45
RTN3-207ENST00000536011 ERVV-2B6SEH9 535 aa17.87■□□□□ 0.45
RTN3-207ENST00000536011 GPR162Q16538 588 aa17.87■□□□□ 0.45
RTN3-207ENST00000536011 DCAF5Q96JK2 942 aa17.87■□□□□ 0.45
RTN3-207ENST00000536011 SSFA2P28290 1259 aa17.85■□□□□ 0.45
RTN3-207ENST00000536011 C1orf141Q5JVX7 400 aa17.85■□□□□ 0.45
RTN3-207ENST00000536011 ZNF530Q6P9A1 599 aaPredicted RBP17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms