RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 SLIT1O75093 1534 aa16.42■□□□□ 0.22
LDLR-203ENST00000535915 DIP2AQ14689 1571 aa16.42■□□□□ 0.22
LDLR-203ENST00000535915 ARHGEF10O15013 1369 aa16.42■□□□□ 0.22
LDLR-203ENST00000535915 TBX22Q9Y458 520 aa16.41■□□□□ 0.22
LDLR-203ENST00000535915 FER1L4A9Z1Z3 1794 aa16.41■□□□□ 0.22
LDLR-203ENST00000535915 FLT4P35916 1363 aa16.41■□□□□ 0.22
LDLR-203ENST00000535915 SBNO1A3KN83 1393 aa16.4■□□□□ 0.22
LDLR-203ENST00000535915 RGS12O14924 1447 aa16.4■□□□□ 0.22
LDLR-203ENST00000535915 RTF1Q92541 710 aaKnown RBP16.4■□□□□ 0.22
LDLR-203ENST00000535915 CHMP5Q9NZZ3 219 aa16.4■□□□□ 0.22
LDLR-203ENST00000535915 ARHGAP23Q9P227 1491 aa16.4■□□□□ 0.22
LDLR-203ENST00000535915 CRB1P82279 1406 aa16.4■□□□□ 0.22
LDLR-203ENST00000535915 FOXO3O43524 673 aa16.4■□□□□ 0.22
LDLR-203ENST00000535915 TBC1D9Q6ZT07 1266 aa16.4■□□□□ 0.22
LDLR-203ENST00000535915 MIS18AQ9NYP9 233 aa16.4■□□□□ 0.22
LDLR-203ENST00000535915 PTPRCP08575 1304 aa16.39■□□□□ 0.21
LDLR-203ENST00000535915 AMPHP49418 695 aa16.39■□□□□ 0.21
LDLR-203ENST00000535915 MTHFSDQ2M296 383 aaKnown RBP16.39■□□□□ 0.21
LDLR-203ENST00000535915 DCTPP1Q9H773 170 aa16.39■□□□□ 0.21
LDLR-203ENST00000535915 BRPF3Q9ULD4 1205 aa16.39■□□□□ 0.21
LDLR-203ENST00000535915 PIK3C2AO00443 1686 aa16.39■□□□□ 0.21
LDLR-203ENST00000535915 MSH6P52701 1360 aa16.39■□□□□ 0.21
LDLR-203ENST00000535915 SLC4A2P04920 1241 aa16.38■□□□□ 0.21
LDLR-203ENST00000535915 ANKRD44Q8N8A2 993 aa16.38■□□□□ 0.21
LDLR-203ENST00000535915 TSPYL4Q9UJ04 414 aa16.38■□□□□ 0.21
LDLR-203ENST00000535915 THEMISQ8N1K5 641 aaPredicted RBP16.37■□□□□ 0.21
LDLR-203ENST00000535915 SNX21Q969T3 373 aa16.37■□□□□ 0.21
LDLR-203ENST00000535915 ATP10DQ9P241 1426 aa16.37■□□□□ 0.21
LDLR-203ENST00000535915 PLEKHM2Q8IWE5 1019 aa16.37■□□□□ 0.21
LDLR-203ENST00000535915 RPAP2Q8IXW5 612 aaPredicted RBP16.37■□□□□ 0.21
LDLR-203ENST00000535915 CDC45O75419 566 aa16.36■□□□□ 0.21
LDLR-203ENST00000535915 EYA1Q99502 592 aa16.36■□□□□ 0.21
LDLR-203ENST00000535915 KDRP35968 1356 aa16.36■□□□□ 0.21
LDLR-203ENST00000535915 CEP170BQ9Y4F5 1589 aaPredicted RBP16.36■□□□□ 0.21
LDLR-203ENST00000535915 CEP85Q6P2H3 762 aa16.36■□□□□ 0.21
LDLR-203ENST00000535915 GSPT1P15170 499 aaKnown RBP16.35■□□□□ 0.21
LDLR-203ENST00000535915 MCM4P33991 863 aa16.35■□□□□ 0.21
LDLR-203ENST00000535915 NLRP6P59044 892 aa16.35■□□□□ 0.21
LDLR-203ENST00000535915 IGSF1Q8N6C5 1336 aa16.35■□□□□ 0.21
LDLR-203ENST00000535915 XRN1Q8IZH2 1706 aaKnown RBP16.35■□□□□ 0.21
LDLR-203ENST00000535915 MEIS3Q99687 375 aa16.35■□□□□ 0.21
LDLR-203ENST00000535915 RTL1A6NKG5 1358 aa16.35■□□□□ 0.21
LDLR-203ENST00000535915 HSP90AB1P08238 724 aaKnown RBP16.34■□□□□ 0.21
LDLR-203ENST00000535915 C16orf71Q8IYS4 520 aaPredicted RBP16.34■□□□□ 0.21
LDLR-203ENST00000535915 GAS2L2Q8NHY3 880 aa16.34■□□□□ 0.21
LDLR-203ENST00000535915 KIF2CQ99661 725 aa16.34■□□□□ 0.21
LDLR-203ENST00000535915 NCOA3Q9Y6Q9 1424 aa16.34■□□□□ 0.21
LDLR-203ENST00000535915 APBB1O00213 710 aa16.33■□□□□ 0.2
LDLR-203ENST00000535915 TTC22Q5TAA0 569 aa16.33■□□□□ 0.2
LDLR-203ENST00000535915 NUTM2GQ5VZR2 741 aa16.33■□□□□ 0.2
LDLR-203ENST00000535915 SLC4A10Q6U841 1118 aa16.33■□□□□ 0.2
LDLR-203ENST00000535915 MARF1Q9Y4F3 1742 aaKnown RBP16.32■□□□□ 0.2
LDLR-203ENST00000535915 G2E3Q7L622 706 aa16.32■□□□□ 0.2
LDLR-203ENST00000535915 F6X3S4 739 aa16.31■□□□□ 0.2
LDLR-203ENST00000535915 KCNA6P17658 529 aa16.31■□□□□ 0.2
LDLR-203ENST00000535915 ANKARQ7Z5J8 1434 aa16.31■□□□□ 0.2
LDLR-203ENST00000535915 CACNA1FO60840 1977 aa16.3■□□□□ 0.2
LDLR-203ENST00000535915 SMARCA5O60264 1052 aaPredicted RBP16.3■□□□□ 0.2
LDLR-203ENST00000535915 HSP90AA1P07900 732 aaKnown RBP16.3■□□□□ 0.2
LDLR-203ENST00000535915 OTUD7AQ8TE49 926 aaPredicted RBP16.3■□□□□ 0.2
LDLR-203ENST00000535915 HOXC9P31274 260 aa16.3■□□□□ 0.2
LDLR-203ENST00000535915 DDIT3P35638 169 aa16.3■□□□□ 0.2
LDLR-203ENST00000535915 RBM42Q9BTD8 480 aaKnown RBP16.3■□□□□ 0.2
LDLR-203ENST00000535915 STK31Q9BXU1 1019 aa16.3■□□□□ 0.2
LDLR-203ENST00000535915 SETD1BQ9UPS6 1966 aaKnown RBP16.3■□□□□ 0.2
LDLR-203ENST00000535915 GNAT3A8MTJ3 354 aa16.29■□□□□ 0.2
LDLR-203ENST00000535915 CD2BP2O95400 341 aaKnown RBP16.29■□□□□ 0.2
LDLR-203ENST00000535915 CCT4P50991 539 aaKnown RBP16.29■□□□□ 0.2
LDLR-203ENST00000535915 ABTB2Q8N961 1025 aa16.29■□□□□ 0.2
LDLR-203ENST00000535915 LRRC37A3O60309 1634 aa16.29■□□□□ 0.2
LDLR-203ENST00000535915 HTATSF1O43719 755 aaKnown RBP16.29■□□□□ 0.2
LDLR-203ENST00000535915 HMMRO75330 724 aa16.29■□□□□ 0.2
LDLR-203ENST00000535915 FAM208AQ9UK61 1670 aaKnown RBP16.28■□□□□ 0.2
LDLR-203ENST00000535915 LTV1Q96GA3 475 aaPredicted RBP16.28■□□□□ 0.2
LDLR-203ENST00000535915 K7ELQ4 463 aaPredicted RBP16.28■□□□□ 0.2
LDLR-203ENST00000535915 C14orf37Q86TY3 774 aa16.27■□□□□ 0.2
LDLR-203ENST00000535915 USP54Q70EL1 1684 aa16.27■□□□□ 0.2
LDLR-203ENST00000535915 LTN1O94822 1766 aa16.27■□□□□ 0.2
LDLR-203ENST00000535915 TRAK2O60296 914 aa16.27■□□□□ 0.2
LDLR-203ENST00000535915 GZF1Q9H116 711 aaPredicted RBP16.27■□□□□ 0.2
LDLR-203ENST00000535915 DDX11L8A8MPP1 907 aa16.26■□□□□ 0.19
LDLR-203ENST00000535915 FOXD4L1Q9NU39 408 aa16.26■□□□□ 0.19
LDLR-203ENST00000535915 CIZ1Q9ULV3 898 aaPredicted RBP16.26■□□□□ 0.19
LDLR-203ENST00000535915 SDSP20132 328 aa16.26■□□□□ 0.19
LDLR-203ENST00000535915 L1TD1Q5T7N2 865 aaKnown RBP16.26■□□□□ 0.19
LDLR-203ENST00000535915 CCDC30Q5VVM6 783 aa16.26■□□□□ 0.19
LDLR-203ENST00000535915 NECTIN2Q92692 538 aa16.26■□□□□ 0.19
LDLR-203ENST00000535915 CASC1Q6TDU7 716 aa16.26■□□□□ 0.19
LDLR-203ENST00000535915 NWD1Q149M9 1564 aa16.25■□□□□ 0.19
LDLR-203ENST00000535915 FKBP5Q13451 457 aaPredicted RBP16.25■□□□□ 0.19
LDLR-203ENST00000535915 MAP3K5Q99683 1374 aa16.25■□□□□ 0.19
LDLR-203ENST00000535915 AK9Q5TCS8 1911 aa16.25■□□□□ 0.19
LDLR-203ENST00000535915 GNAI2P04899 355 aa16.25■□□□□ 0.19
LDLR-203ENST00000535915 FLIIQ13045 1269 aa16.25■□□□□ 0.19
LDLR-203ENST00000535915 TNPO1Q92973 898 aaKnown RBP16.25■□□□□ 0.19
LDLR-203ENST00000535915 ARXQ96QS3 562 aa16.24■□□□□ 0.19
LDLR-203ENST00000535915 IL17REQ8NFR9 667 aa16.23■□□□□ 0.19
LDLR-203ENST00000535915 USP26Q9BXU7 913 aa16.23■□□□□ 0.19
LDLR-203ENST00000535915 CHD2O14647 1828 aaKnown RBP16.23■□□□□ 0.19
LDLR-203ENST00000535915 RAB3GAP1Q15042 981 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms