RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 KNDC1Q76NI1 1749 aa8.08□□□□□ -1.12
SYNE1-233ENST00000535896 SENP3-EIF4A1A0A087X0R7 540 aa8.08□□□□□ -1.12
SYNE1-233ENST00000535896 PRKCSHP14314 528 aaPredicted RBP8.08□□□□□ -1.12
SYNE1-233ENST00000535896 CFAP70Q5T0N1 1121 aa8.08□□□□□ -1.12
SYNE1-233ENST00000535896 CARD14Q9BXL6 1004 aa8.08□□□□□ -1.12
SYNE1-233ENST00000535896 MYH16Q9H6N6 1097 aa8.08□□□□□ -1.12
SYNE1-233ENST00000535896 COL3A1P02461 1466 aaPredicted RBP8.07□□□□□ -1.12
SYNE1-233ENST00000535896 CANXP27824 592 aaKnown RBP8.07□□□□□ -1.12
SYNE1-233ENST00000535896 IL16Q14005 1332 aa8.07□□□□□ -1.12
SYNE1-233ENST00000535896 STRCP1A6NGW2 1772 aa8.07□□□□□ -1.12
SYNE1-233ENST00000535896 PTPRUQ92729 1446 aa8.06□□□□□ -1.12
SYNE1-233ENST00000535896 YTHDC2Q9H6S0 1430 aaKnown RBP8.06□□□□□ -1.12
SYNE1-233ENST00000535896 NCOA3Q9Y6Q9 1424 aa8.06□□□□□ -1.12
SYNE1-233ENST00000535896 DLC1Q96QB1 1528 aa8.06□□□□□ -1.12
SYNE1-233ENST00000535896 RARSP54136 660 aaKnown RBP8.06□□□□□ -1.12
SYNE1-233ENST00000535896 MORC1Q86VD1 984 aa8.06□□□□□ -1.12
SYNE1-233ENST00000535896 FBXO22Q8NEZ5 403 aa8.06□□□□□ -1.12
SYNE1-233ENST00000535896 AMOTL2Q9Y2J4 779 aa8.06□□□□□ -1.12
SYNE1-233ENST00000535896 EVC2Q86UK5 1308 aa8.06□□□□□ -1.12
SYNE1-233ENST00000535896 ATAD2Q6PL18 1390 aa8.06□□□□□ -1.12
SYNE1-233ENST00000535896 LRRC7Q96NW7 1537 aa8.05□□□□□ -1.12
SYNE1-233ENST00000535896 CCDC146Q8IYE0 955 aa8.05□□□□□ -1.12
SYNE1-233ENST00000535896 SIRT1Q96EB6 747 aa8.05□□□□□ -1.12
SYNE1-233ENST00000535896 RWDD1Q9H446 243 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-233ENST00000535896 TAOK2Q9UL54 1235 aa8.05□□□□□ -1.12
SYNE1-233ENST00000535896 USP19O94966 1318 aa8.05□□□□□ -1.12
SYNE1-233ENST00000535896 FAM135BQ49AJ0 1406 aa8.05□□□□□ -1.12
SYNE1-233ENST00000535896 PPIP5K1Q6PFW1 1433 aa8.05□□□□□ -1.12
SYNE1-233ENST00000535896 BCAR3O75815 825 aa8.04□□□□□ -1.12
SYNE1-233ENST00000535896 RGS3P49796 1198 aa8.04□□□□□ -1.12
SYNE1-233ENST00000535896 HAP1P54257 671 aaPredicted RBP8.04□□□□□ -1.12
SYNE1-233ENST00000535896 TMEM132EQ6IEE7 984 aa8.04□□□□□ -1.12
SYNE1-233ENST00000535896 ZNF428Q96B54 188 aa8.04□□□□□ -1.12
SYNE1-233ENST00000535896 BCL11BQ9C0K0 894 aaPredicted RBP8.04□□□□□ -1.12
SYNE1-233ENST00000535896 PNNQ9H307 717 aaKnown RBP8.04□□□□□ -1.12
SYNE1-233ENST00000535896 TMEM94Q12767 1356 aa8.04□□□□□ -1.12
SYNE1-233ENST00000535896 EIF5BO60841 1220 aaKnown RBP8.03□□□□□ -1.12
SYNE1-233ENST00000535896 NUDT7P0C024 238 aa8.03□□□□□ -1.12
SYNE1-233ENST00000535896 PROSER2Q86WR7 435 aaPredicted RBP8.03□□□□□ -1.12
SYNE1-233ENST00000535896 TCP11L2Q8N4U5 519 aa8.03□□□□□ -1.12
SYNE1-233ENST00000535896 TBC1D32Q96NH3 1257 aa8.03□□□□□ -1.12
SYNE1-233ENST00000535896 DCCP43146 1447 aa8.02□□□□□ -1.13
SYNE1-233ENST00000535896 ADGRL3Q9HAR2 1447 aa8.02□□□□□ -1.13
SYNE1-233ENST00000535896 ROBO2Q9HCK4 1378 aa8.02□□□□□ -1.13
SYNE1-233ENST00000535896 KIF16BQ96L93 1317 aa8.02□□□□□ -1.13
SYNE1-233ENST00000535896 C2orf72A6NCS6 295 aa8.02□□□□□ -1.13
SYNE1-233ENST00000535896 KIF3CO14782 793 aa8.02□□□□□ -1.13
SYNE1-233ENST00000535896 ECM2O94769 699 aaPredicted RBP8.02□□□□□ -1.13
SYNE1-233ENST00000535896 IGHDP01880 384 aa8.02□□□□□ -1.13
SYNE1-233ENST00000535896 HDAC1Q13547 482 aaPredicted RBP8.02□□□□□ -1.13
SYNE1-233ENST00000535896 MVPQ14764 893 aaKnown RBP8.02□□□□□ -1.13
SYNE1-233ENST00000535896 L1TD1Q5T7N2 865 aaKnown RBP8.02□□□□□ -1.13
SYNE1-233ENST00000535896 ZKSCAN2Q63HK3 967 aa8.02□□□□□ -1.13
SYNE1-233ENST00000535896 CERKQ8TCT0 537 aa8.02□□□□□ -1.13
SYNE1-233ENST00000535896 CHMP4BQ9H444 224 aaKnown RBP8.02□□□□□ -1.13
SYNE1-233ENST00000535896 STK26Q9P289 416 aa8.02□□□□□ -1.13
SYNE1-233ENST00000535896 HCSTQ9UBK5 93 aa8.02□□□□□ -1.13
SYNE1-233ENST00000535896 ISY1Q9ULR0 285 aaKnown RBP8.02□□□□□ -1.13
SYNE1-233ENST00000535896 XIRP1Q702N8 1843 aaKnown RBP8.02□□□□□ -1.13
SYNE1-233ENST00000535896 ATP7BP35670 1465 aa8.02□□□□□ -1.13
SYNE1-233ENST00000535896 MSH6P52701 1360 aa8.01□□□□□ -1.13
SYNE1-233ENST00000535896 FRAT1Q92837 279 aaPredicted RBP8.01□□□□□ -1.13
SYNE1-233ENST00000535896 DDX19BQ9UMR2 479 aa8.01□□□□□ -1.13
SYNE1-233ENST00000535896 COG6Q9Y2V7 657 aa8.01□□□□□ -1.13
SYNE1-233ENST00000535896 PNPLA6Q8IY17 1366 aa8.01□□□□□ -1.13
SYNE1-233ENST00000535896 SLC34A2O95436 690 aa8□□□□□ -1.13
SYNE1-233ENST00000535896 BRPF1P55201 1214 aaPredicted RBP8□□□□□ -1.13
SYNE1-233ENST00000535896 C14orf37Q86TY3 774 aa8□□□□□ -1.13
SYNE1-233ENST00000535896 FAM43AQ8N2R8 423 aa8□□□□□ -1.13
SYNE1-233ENST00000535896 MFRPQ9BY79 579 aa8□□□□□ -1.13
SYNE1-233ENST00000535896 C19orf44Q9H6X5 657 aa8□□□□□ -1.13
SYNE1-233ENST00000535896 PLA2G2EQ9NZK7 142 aa8□□□□□ -1.13
SYNE1-233ENST00000535896 LHX6Q9UPM6 363 aa8□□□□□ -1.13
SYNE1-233ENST00000535896 TRAK1Q9UPV9 953 aa8□□□□□ -1.13
SYNE1-233ENST00000535896 AXIN2Q9Y2T1 843 aa8□□□□□ -1.13
SYNE1-233ENST00000535896 STK24Q9Y6E0 443 aa8□□□□□ -1.13
SYNE1-233ENST00000535896 NALCNQ8IZF0 1738 aa8□□□□□ -1.13
SYNE1-233ENST00000535896 PTMSP20962 102 aa7.99□□□□□ -1.13
SYNE1-233ENST00000535896 ALDH1L2Q3SY69 923 aa7.99□□□□□ -1.13
SYNE1-233ENST00000535896 POTEEQ6S8J3 1075 aa7.99□□□□□ -1.13
SYNE1-233ENST00000535896 SKAP1Q86WV1 359 aa7.99□□□□□ -1.13
SYNE1-233ENST00000535896 DZIP1LQ8IYY4 767 aaKnown RBP7.99□□□□□ -1.13
SYNE1-233ENST00000535896 PANK1Q8TE04 598 aa7.99□□□□□ -1.13
SYNE1-233ENST00000535896 PRAM1Q96QH2 718 aa7.99□□□□□ -1.13
SYNE1-233ENST00000535896 ANTXR1Q9H6X2 564 aa7.99□□□□□ -1.13
SYNE1-233ENST00000535896 POGKQ9P215 609 aa7.99□□□□□ -1.13
SYNE1-233ENST00000535896 PCDHGA4Q9Y5G9 962 aa7.99□□□□□ -1.13
SYNE1-233ENST00000535896 MON2Q7Z3U7 1717 aa7.99□□□□□ -1.13
SYNE1-233ENST00000535896 A0A1W2PP64 1363 aa7.99□□□□□ -1.13
SYNE1-233ENST00000535896 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.98□□□□□ -1.13
SYNE1-233ENST00000535896 FRAT2O75474 233 aaPredicted RBP7.98□□□□□ -1.13
SYNE1-233ENST00000535896 MTHFSP49914 203 aa7.98□□□□□ -1.13
SYNE1-233ENST00000535896 CADPS2Q86UW7 1296 aa7.98□□□□□ -1.13
SYNE1-233ENST00000535896 FTSJ3Q8IY81 847 aaKnown RBP7.98□□□□□ -1.13
SYNE1-233ENST00000535896 IL27Q8NEV9 243 aa7.98□□□□□ -1.13
SYNE1-233ENST00000535896 CFAP44Q96MT7 982 aa7.98□□□□□ -1.13
SYNE1-233ENST00000535896 CD163L1Q9NR16 1453 aa7.98□□□□□ -1.13
SYNE1-233ENST00000535896 PSDA5PKW4 1024 aaPredicted RBP7.97□□□□□ -1.13
SYNE1-233ENST00000535896 IPO8O15397 1037 aaKnown RBP7.97□□□□□ -1.13
SYNE1-233ENST00000535896 TOM1O60784 492 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms