RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-210ENST00000534172 TNFRSF10AO00220 468 aa6.2□□□□□ -1.42
CSMD3-210ENST00000534172 SMPD1P17405 629 aa6.2□□□□□ -1.42
CSMD3-210ENST00000534172 CDCA7Q9BWT1 371 aaPredicted RBP6.2□□□□□ -1.42
CSMD3-210ENST00000534172 GNRH1P01148 92 aa6.2□□□□□ -1.42
CSMD3-210ENST00000534172 RASA1P20936 1047 aa6.2□□□□□ -1.42
CSMD3-210ENST00000534172 GTF2IP78347 998 aa6.2□□□□□ -1.42
CSMD3-210ENST00000534172 CTC1Q2NKJ3 1217 aa6.2□□□□□ -1.42
CSMD3-210ENST00000534172 M0R2N6 131 aa6.19□□□□□ -1.42
CSMD3-210ENST00000534172 BACH1O14867 736 aa6.19□□□□□ -1.42
CSMD3-210ENST00000534172 B4GALNT3Q6L9W6 998 aa6.19□□□□□ -1.42
CSMD3-210ENST00000534172 TRIM67Q6ZTA4 783 aa6.19□□□□□ -1.42
CSMD3-210ENST00000534172 SIX5Q8N196 739 aa6.19□□□□□ -1.42
CSMD3-210ENST00000534172 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.18□□□□□ -1.42
CSMD3-210ENST00000534172 USP17L15C9J2P7 530 aa6.18□□□□□ -1.42
CSMD3-210ENST00000534172 USP17L10C9JJH3 530 aa6.18□□□□□ -1.42
CSMD3-210ENST00000534172 USP17L13C9JLJ4 530 aa6.18□□□□□ -1.42
CSMD3-210ENST00000534172 USP17L12C9JPN9 530 aa6.18□□□□□ -1.42
CSMD3-210ENST00000534172 USP17L11C9JVI0 530 aa6.18□□□□□ -1.42
CSMD3-210ENST00000534172 USP17L21D6R901 530 aa6.18□□□□□ -1.42
CSMD3-210ENST00000534172 USP17L18D6R9N7 530 aa6.18□□□□□ -1.42
CSMD3-210ENST00000534172 USP17L22D6RA61 530 aa6.18□□□□□ -1.42
CSMD3-210ENST00000534172 USP17L17D6RBQ6 530 aa6.18□□□□□ -1.42
CSMD3-210ENST00000534172 USP17L19D6RCP7 530 aa6.18□□□□□ -1.42
CSMD3-210ENST00000534172 USP17L20D6RJB6 530 aa6.18□□□□□ -1.42
CSMD3-210ENST00000534172 J3QL48 77 aa6.18□□□□□ -1.42
CSMD3-210ENST00000534172 RANGAP1P46060 587 aaPredicted RBP6.18□□□□□ -1.42
CSMD3-210ENST00000534172 WDR4P57081 412 aaKnown RBP6.18□□□□□ -1.42
CSMD3-210ENST00000534172 USP17L24Q0WX57 530 aa6.18□□□□□ -1.42
CSMD3-210ENST00000534172 DEPDC4Q8N2C3 294 aa6.18□□□□□ -1.42
CSMD3-210ENST00000534172 OGFOD1Q8N543 542 aa6.18□□□□□ -1.42
CSMD3-210ENST00000534172 ZNF784Q8NCA9 323 aaPredicted RBP6.18□□□□□ -1.42
CSMD3-210ENST00000534172 FAM200AQ8TCP9 573 aa6.18□□□□□ -1.42
CSMD3-210ENST00000534172 WASLO00401 505 aaPredicted RBP6.18□□□□□ -1.42
CSMD3-210ENST00000534172 UPP2O95045 317 aa6.18□□□□□ -1.42
CSMD3-210ENST00000534172 ZIC2O95409 532 aaPredicted RBP6.18□□□□□ -1.42
CSMD3-210ENST00000534172 ADH1AP07327 375 aa6.18□□□□□ -1.42
CSMD3-210ENST00000534172 NR3C2P08235 984 aa6.18□□□□□ -1.42
CSMD3-210ENST00000534172 Q6ZVU0 165 aa6.18□□□□□ -1.42
CSMD3-210ENST00000534172 PATL2C9JE40 543 aaKnown RBP6.17□□□□□ -1.42
CSMD3-210ENST00000534172 AVPP01185 164 aa6.17□□□□□ -1.42
CSMD3-210ENST00000534172 SMCPP49901 116 aaPredicted RBP6.17□□□□□ -1.42
CSMD3-210ENST00000534172 PSME1Q06323 249 aa6.17□□□□□ -1.42
CSMD3-210ENST00000534172 ANKMY2Q8IV38 441 aa6.17□□□□□ -1.42
CSMD3-210ENST00000534172 CYLDQ9NQC7 956 aa6.17□□□□□ -1.42
CSMD3-210ENST00000534172 TMPRSS4Q9NRS4 437 aa6.17□□□□□ -1.42
CSMD3-210ENST00000534172 GFRA3O60609 400 aa6.17□□□□□ -1.42
CSMD3-210ENST00000534172 LILRA1O75019 489 aa6.17□□□□□ -1.42
CSMD3-210ENST00000534172 PTK7Q13308 1070 aa6.17□□□□□ -1.42
CSMD3-210ENST00000534172 TSGA10IPQ3SY00 556 aa6.17□□□□□ -1.42
CSMD3-210ENST00000534172 PKDCCQ504Y2 493 aa6.17□□□□□ -1.42
CSMD3-210ENST00000534172 NOVA2Q9UNW9 492 aaKnown RBP6.17□□□□□ -1.42
CSMD3-210ENST00000534172 PCDHGA11Q9Y5H2 935 aa6.17□□□□□ -1.42
CSMD3-210ENST00000534172 FAM187AA6NFU0 413 aa6.16□□□□□ -1.42
CSMD3-210ENST00000534172 TIMP2P16035 220 aa6.16□□□□□ -1.42
CSMD3-210ENST00000534172 SEC13P55735 322 aa6.16□□□□□ -1.42
CSMD3-210ENST00000534172 TSEN34Q9BSV6 310 aaKnown RBP6.16□□□□□ -1.42
CSMD3-210ENST00000534172 KLF16Q9BXK1 252 aaPredicted RBP6.16□□□□□ -1.42
CSMD3-210ENST00000534172 SWI5Q1ZZU3 235 aa6.16□□□□□ -1.42
CSMD3-210ENST00000534172 CCDC102BQ68D86 513 aa6.16□□□□□ -1.42
CSMD3-210ENST00000534172 OSBPL3Q9H4L5 887 aa6.16□□□□□ -1.42
CSMD3-210ENST00000534172 CAPN5O15484 640 aaPredicted RBP6.15□□□□□ -1.42
CSMD3-210ENST00000534172 GTF2E1P29083 439 aaPredicted RBP6.15□□□□□ -1.42
CSMD3-210ENST00000534172 PDIA4P13667 645 aaKnown RBP6.15□□□□□ -1.43
CSMD3-210ENST00000534172 PTGIRP43119 386 aa6.15□□□□□ -1.43
CSMD3-210ENST00000534172 ZBTB7BO15156 539 aaPredicted RBP6.14□□□□□ -1.43
CSMD3-210ENST00000534172 CRIPAKQ8N1N5 446 aa6.14□□□□□ -1.43
CSMD3-210ENST00000534172 GAS2L2Q8NHY3 880 aa6.14□□□□□ -1.43
CSMD3-210ENST00000534172 HPS1Q92902 700 aa6.14□□□□□ -1.43
CSMD3-210ENST00000534172 ITPKCQ96DU7 683 aa6.14□□□□□ -1.43
CSMD3-210ENST00000534172 NLRP3Q96P20 1036 aa6.14□□□□□ -1.43
CSMD3-210ENST00000534172 TRAIPQ9BWF2 469 aa6.14□□□□□ -1.43
CSMD3-210ENST00000534172 GPC1P35052 558 aa6.14□□□□□ -1.43
CSMD3-210ENST00000534172 SCTRP47872 440 aa6.14□□□□□ -1.43
CSMD3-210ENST00000534172 CLDN10P78369 228 aa6.14□□□□□ -1.43
CSMD3-210ENST00000534172 SCARF1Q14162 830 aa6.14□□□□□ -1.43
CSMD3-210ENST00000534172 CDCA8Q53HL2 280 aa6.14□□□□□ -1.43
CSMD3-210ENST00000534172 MEIOBQ8N635 442 aa6.14□□□□□ -1.43
CSMD3-210ENST00000534172 XAGE2Q96GT9 111 aa6.14□□□□□ -1.43
CSMD3-210ENST00000534172 IRX2Q9BZI1 471 aaPredicted RBP6.14□□□□□ -1.43
CSMD3-210ENST00000534172 GDF10P55107 478 aa6.13□□□□□ -1.43
CSMD3-210ENST00000534172 CRTC2Q53ET0 693 aaPredicted RBP6.13□□□□□ -1.43
CSMD3-210ENST00000534172 NBPF15Q8N660 670 aa6.13□□□□□ -1.43
CSMD3-210ENST00000534172 INHAP05111 366 aa6.13□□□□□ -1.43
CSMD3-210ENST00000534172 ADD1P35611 737 aaKnown RBP6.13□□□□□ -1.43
CSMD3-210ENST00000534172 DPYDQ12882 1025 aa6.13□□□□□ -1.43
CSMD3-210ENST00000534172 TPCN2Q8NHX9 752 aa6.13□□□□□ -1.43
CSMD3-210ENST00000534172 SLC4A9Q96Q91 983 aa6.13□□□□□ -1.43
CSMD3-210ENST00000534172 CLN3Q13286 438 aa6.12□□□□□ -1.43
CSMD3-210ENST00000534172 ESYT1Q9BSJ8 1104 aa6.11□□□□□ -1.43
CSMD3-210ENST00000534172 ZFAND3Q9H8U3 227 aa6.11□□□□□ -1.43
CSMD3-210ENST00000534172 AXIN1O15169 862 aa6.11□□□□□ -1.43
CSMD3-210ENST00000534172 KCTD17Q8N5Z5 321 aa6.11□□□□□ -1.43
CSMD3-210ENST00000534172 RETREG2Q8NC44 543 aa6.11□□□□□ -1.43
CSMD3-210ENST00000534172 CLP1Q92989 425 aaKnown RBP6.11□□□□□ -1.43
CSMD3-210ENST00000534172 ZNF594Q96JF6 807 aaPredicted RBP6.11□□□□□ -1.43
CSMD3-210ENST00000534172 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.11□□□□□ -1.43
CSMD3-210ENST00000534172 CHMP3Q9Y3E7 222 aa6.11□□□□□ -1.43
CSMD3-210ENST00000534172 NPM2Q86SE8 214 aaKnown RBP6.1□□□□□ -1.43
CSMD3-210ENST00000534172 ZNF358Q9NW07 568 aa6.1□□□□□ -1.43
CSMD3-210ENST00000534172 MTMR7Q9Y216 660 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms